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@article{DBLP:journals/bioinformatics/JaillardTMV16,
  author       = {Magali Jaillard and
                  Maud Tournoud and
                  Faustine Meynier and
                  Jean{-}Baptiste Veyrieras},
  title        = {Optimization of alignment-based methods for taxonomic binning of metagenomics
                  reads},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {12},
  pages        = {1779--1787},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btw040},
  doi          = {10.1093/BIOINFORMATICS/BTW040},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/JaillardTMV16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/VervierMTVV16,
  author       = {Kevin Vervier and
                  Pierre Mah{\'{e}} and
                  Maud Tournoud and
                  Jean{-}Baptiste Veyrieras and
                  Jean{-}Philippe Vert},
  title        = {Large-scale machine learning for metagenomics sequence classification},
  journal      = {Bioinform.},
  volume       = {32},
  number       = {7},
  pages        = {1023--1032},
  year         = {2016},
  url          = {https://doi.org/10.1093/bioinformatics/btv683},
  doi          = {10.1093/BIOINFORMATICS/BTV683},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/VervierMTVV16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/TournoudLCVPMLV15,
  author       = {Maud Tournoud and
                  Audrey Larue and
                  Marie{-}Angelique Cazalis and
                  Fabienne Venet and
                  Alexandre Pachot and
                  Guillaume Monneret and
                  Alain Lepape and
                  Jean{-}Baptiste Veyrieras},
  title        = {A strategy to build and validate a prognostic biomarker model based
                  on RT-qPCR gene expression and clinical covariates},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  pages        = {106:1--106:15},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12859-015-0537-9},
  doi          = {10.1186/S12859-015-0537-9},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/TournoudLCVPMLV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/VervierMTVV15,
  author       = {Kevin Vervier and
                  Pierre Mah{\'{e}} and
                  Maud Tournoud and
                  Jean{-}Baptiste Veyrieras and
                  Jean{-}Philippe Vert},
  title        = {Large-scale Machine Learning for Metagenomics Sequence Classification},
  journal      = {CoRR},
  volume       = {abs/1505.06915},
  year         = {2015},
  url          = {http://arxiv.org/abs/1505.06915},
  eprinttype    = {arXiv},
  eprint       = {1505.06915},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/VervierMTVV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/VervierMVV15,
  author       = {Kevin Vervier and
                  Pierre Mah{\'{e}} and
                  Jean{-}Baptiste Veyrieras and
                  Jean{-}Philippe Vert},
  title        = {Benchmark of structured machine learning methods for microbial identification
                  from mass-spectrometry data},
  journal      = {CoRR},
  volume       = {abs/1506.07251},
  year         = {2015},
  url          = {http://arxiv.org/abs/1506.07251},
  eprinttype    = {arXiv},
  eprint       = {1506.07251},
  timestamp    = {Mon, 13 Aug 2018 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/corr/VervierMVV15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HernandezTVFOFS14,
  author       = {David Hern{\'{a}}ndez and
                  Ryan Tewhey and
                  Jean{-}Baptiste Veyrieras and
                  Laurent Farinelli and
                  Magne {\O}ster{\aa}s and
                  Patrice Fran{\c{c}}ois and
                  Jacques Schrenzel},
  title        = {\emph{De no}vo finished 2.8 Mbp \emph{Staphylococcus aureus} genome
                  assembly from 100 bp short and long range paired-end reads},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {1},
  pages        = {40--49},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btt590},
  doi          = {10.1093/BIOINFORMATICS/BTT590},
  timestamp    = {Mon, 26 Oct 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/HernandezTVFOFS14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MaheACMPMGRSLBV14,
  author       = {Pierre Mah{\'{e}} and
                  Maud Arsac and
                  Sonia Chatellier and
                  Val{\'{e}}rie Monnin and
                  Nadine Perrot and
                  Sandrine Mailler and
                  Victoria Girard and
                  Mahendrasingh Ramjeet and
                  J{\'{e}}r{\'{e}}my Surre and
                  Bruno Lacroix and
                  Alex van Belkum and
                  Jean{-}Baptiste Veyrieras},
  title        = {Automatic identification of mixed bacterial species fingerprints in
                  a {MALDI-TOF} mass-spectrum},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {9},
  pages        = {1280--1286},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btu022},
  doi          = {10.1093/BIOINFORMATICS/BTU022},
  timestamp    = {Mon, 02 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/MaheACMPMGRSLBV14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pkdd/VervierMdVV14,
  author       = {Kevin Vervier and
                  Pierre Mah{\'{e}} and
                  Alexandre d'Aspremont and
                  Jean{-}Baptiste Veyrieras and
                  Jean{-}Philippe Vert},
  editor       = {Toon Calders and
                  Floriana Esposito and
                  Eyke H{\"{u}}llermeier and
                  Rosa Meo},
  title        = {On Learning Matrices with Orthogonal Columns or Disjoint Supports},
  booktitle    = {Machine Learning and Knowledge Discovery in Databases - European Conference,
                  {ECML} {PKDD} 2014, Nancy, France, September 15-19, 2014. Proceedings,
                  Part {III}},
  series       = {Lecture Notes in Computer Science},
  volume       = {8726},
  pages        = {274--289},
  publisher    = {Springer},
  year         = {2014},
  url          = {https://doi.org/10.1007/978-3-662-44845-8\_18},
  doi          = {10.1007/978-3-662-44845-8\_18},
  timestamp    = {Thu, 31 Oct 2019 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/pkdd/VervierMdVV14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/i-semantics/JaillardSLV13,
  author       = {Magali Jaillard and
                  St{\'{e}}phane Schicklin and
                  Audrey Larue{-}Triolet and
                  Jean{-}Baptiste Veyrieras},
  editor       = {Steffen Lohmann},
  title        = {A Comprehensive Microbial Knowledge Base to Support the Development
                  of In-vitro Diagnostic Solutions in Infectious Diseases},
  booktitle    = {Proceedings of the {I-SEMANTICS} 2013 Posters {\&} Demonstrations
                  Track, Graz, Austria, September 4-6, 2013},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1026},
  pages        = {55--59},
  publisher    = {CEUR-WS.org},
  year         = {2013},
  url          = {https://ceur-ws.org/Vol-1026/paper12.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:22:16 +0100},
  biburl       = {https://dblp.org/rec/conf/i-semantics/JaillardSLV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@misc{DBLP:data/10/MaheV13,
  author       = {Pierre Mah{\'{e}} and
                  Jean{-}Baptiste Veyrieras},
  title        = {MicroMass},
  publisher    = {{UCI} Machine Learning Repository},
  year         = {2013},
  month        = aug,
  howpublished = {\url{https://doi.org/10.24432/C5T61S}},
  note         = {Accessed on YYYY-MM-DD.},
  url          = {https://doi.org/10.24432/C5T61S},
  doi          = {10.24432/C5T61S},
  timestamp    = {Tue, 18 Jun 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/data/10/MaheV13.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/VeyrierasGC07,
  author       = {Jean{-}Baptiste Veyrieras and
                  Bruno Goffinet and
                  Alain Charcosset},
  title        = {MetaQTL: a package of new computational methods for the meta-analysis
                  of {QTL} mapping experiments},
  journal      = {{BMC} Bioinform.},
  volume       = {8},
  year         = {2007},
  url          = {https://doi.org/10.1186/1471-2105-8-49},
  doi          = {10.1186/1471-2105-8-49},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/VeyrierasGC07.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/SamsonLKRVJB03,
  author       = {Delphine Samson and
                  Fabrice Legeai and
                  Emmanuelle Karsenty and
                  S{\'{e}}bastien Reboux and
                  Jean{-}Baptiste Veyrieras and
                  Jeremy Just and
                  Emmanuel Barillot},
  title        = {G{\'{e}}noPlante-Info {(GPI):} a collection of databases and
                  bioinformatics resources for plant genomics},
  journal      = {Nucleic Acids Res.},
  volume       = {31},
  number       = {1},
  pages        = {179--182},
  year         = {2003},
  url          = {https://doi.org/10.1093/nar/gkg060},
  doi          = {10.1093/NAR/GKG060},
  timestamp    = {Thu, 14 Oct 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/SamsonLKRVJB03.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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