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@article{DBLP:journals/artmed/ChariAGZEGSSMCM23,
author = {Shruthi Chari and
Prasant Acharya and
Daniel M. Gruen and
Olivia Zhang and
Elif K. Eyig{\"{o}}z and
Mohamed F. Ghalwash and
Oshani Seneviratne and
Fernando J. Suarez Saiz and
Pablo Meyer and
Prithwish Chakraborty and
Deborah L. McGuinness},
title = {Informing clinical assessment by contextualizing post-hoc explanations
of risk prediction models in type-2 diabetes},
journal = {Artif. Intell. Medicine},
volume = {137},
pages = {102498},
year = {2023},
url = {https://doi.org/10.1016/j.artmed.2023.102498},
doi = {10.1016/J.ARTMED.2023.102498},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/artmed/ChariAGZEGSSMCM23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/taslp/MeyerPKSH23,
author = {Julie Meyer and
Sebastian Prepelita and
Ali Khajeh{-}Saeed and
Michael Smirnov and
Pablo Hoffmann},
title = {Verification on Head-Related Transfer Functions of a Snowman Model
Simulated Using the Finite-Difference Time-Domain Method},
journal = {{IEEE} {ACM} Trans. Audio Speech Lang. Process.},
volume = {31},
pages = {2579--2591},
year = {2023},
url = {https://doi.org/10.1109/TASLP.2023.3291529},
doi = {10.1109/TASLP.2023.3291529},
timestamp = {Sat, 05 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/taslp/MeyerPKSH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/debs/BegoliMMO23,
author = {Edmon Begoli and
Edmon Meyer and
Pablo Moriano and
Sean Oesch},
editor = {Valerio Schiavoni and
Marcelo Pasin and
Bettina Kemme and
Etienne Rivi{\`{e}}re},
title = {Poster: Cognitive Cyber - Dynamic, Adaptive Cyber Defense Systems
for Massively Distributed, Autonomous, and Ad-hoc Computing Environments},
booktitle = {Proceedings of the 17th {ACM} International Conference on Distributed
and Event-based Systems, {DEBS} 2023, Neuchatel, Switzerland, June
27-30, 2023},
pages = {177--179},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3583678.3603283},
doi = {10.1145/3583678.3603283},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/debs/BegoliMMO23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ei-hpci/LiuSVHHDBRKFGRC23,
author = {Felix Liu and
Vanitha Sankaranarayanan and
Javier E. Villanueva{-}Meyer and
Shawn Hervey{-}Jumper and
James Hawkins and
Pablo F. Damasceno and
Mauro Bisson and
Joshua Romero and
Thorsten Kurth and
Massimiliano Fatica and
Eleftherios Garyfallidis and
Ariel Rokem and
Jason C. Crane and
Sharmila Majumdar},
title = {Clinical validation of rapid GPU-enabled {DTI} tractography of the
brain},
booktitle = {High Performance Computing for Imaging 2023, San Francisco, CA, USA,
January 15-19, 2023},
pages = {1--4},
publisher = {Society for Imaging Science and Technology},
year = {2023},
url = {https://doi.org/10.2352/EI.2023.35.11.HPCI-237},
doi = {10.2352/EI.2023.35.11.HPCI-237},
timestamp = {Fri, 21 Jul 2023 13:58:07 +0200},
biburl = {https://dblp.org/rec/conf/ei-hpci/LiuSVHHDBRKFGRC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-05752,
author = {Shruthi Chari and
Prasant Acharya and
Daniel M. Gruen and
Olivia Zhang and
Elif K. Eyig{\"{o}}z and
Mohamed F. Ghalwash and
Oshani Seneviratne and
Fernando J. Suarez Saiz and
Pablo Meyer and
Prithwish Chakraborty and
Deborah L. McGuinness},
title = {Informing clinical assessment by contextualizing post-hoc explanations
of risk prediction models in type-2 diabetes},
journal = {CoRR},
volume = {abs/2302.05752},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.05752},
doi = {10.48550/ARXIV.2302.05752},
eprinttype = {arXiv},
eprint = {2302.05752},
timestamp = {Sun, 19 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-05752.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2307-15715,
author = {Gregor Stiglic and
Leon Kopitar and
Lucija Gosak and
Primoz Kocbek and
Zhe He and
Prithwish Chakraborty and
Pablo Meyer and
Jiang Bian},
title = {Improving Primary Healthcare Workflow Using Extreme Summarization
of Scientific Literature Based on Generative {AI}},
journal = {CoRR},
volume = {abs/2307.15715},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2307.15715},
doi = {10.48550/ARXIV.2307.15715},
eprinttype = {arXiv},
eprint = {2307.15715},
timestamp = {Thu, 03 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2307-15715.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MorenoFGMMMFFBB22,
author = {Pablo A. Moreno and
Silvie Fexova and
Nancy George and
Jonathan R. Manning and
Zhichao Miao and
Suhaib Mohammed and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Anja F{\"{u}}llgrabe and
Yalan Bi and
Natassja Bush and
Haider Iqbal and
Upendra Kumbham and
Andrey Solovyev and
Lingyun Zhao and
Ananth Prakash and
David Garc{\'{\i}}a{-}Seisdedos and
Deepti Jaiswal Kundu and
Shengbo Wang and
Mathias Walzer and
Laura Clarke and
David Osumi{-}Sutherland and
Marcela Karey Tello{-}Ruiz and
Sunita Kumari and
Doreen Ware and
Jana Eliasova and
Mark J. Arends and
Martijn C. Nawijn and
Kerstin B. Meyer and
Tony Burdett and
John C. Marioni and
Sarah A. Teichmann and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma and
Irene Papatheodorou},
title = {Expression Atlas update: gene and protein expression in multiple species},
journal = {Nucleic Acids Res.},
volume = {50},
number = {{D1}},
pages = {129--140},
year = {2022},
url = {https://doi.org/10.1093/nar/gkab1030},
doi = {10.1093/NAR/GKAB1030},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/MorenoFGMMMFFBB22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/DeyCKDGSNSVM22,
author = {Sanjoy Dey and
Prithwish Chakraborty and
Bum Chul Kwon and
Amit Dhurandhar and
Mohamed F. Ghalwash and
Fernando J. Suarez Saiz and
Kenney Ng and
Daby Sow and
Kush R. Varshney and
Pablo Meyer},
title = {Human-centered explainability for life sciences, healthcare, and medical
informatics},
journal = {Patterns},
volume = {3},
number = {5},
pages = {100493},
year = {2022},
url = {https://doi.org/10.1016/j.patter.2022.100493},
doi = {10.1016/J.PATTER.2022.100493},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/patterns/DeyCKDGSNSVM22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2207-02445,
author = {Steve Nyemba and
Chao Yan and
Ziqi Zhang and
Amol Rajmane and
Pablo Meyer and
Prithwish Chakraborty and
Bradley A. Malin},
title = {Distillation to Enhance the Portability of Risk Models Across Institutions
with Large Patient Claims Database},
journal = {CoRR},
volume = {abs/2207.02445},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2207.02445},
doi = {10.48550/ARXIV.2207.02445},
eprinttype = {arXiv},
eprint = {2207.02445},
timestamp = {Thu, 31 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2207-02445.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sensors/GreiffenbergABB21,
author = {Dominic Greiffenberg and
Marie Andr{\"{a}} and
Rebecca Barten and
Anna Bergamaschi and
Martin Br{\"{u}}ckner and
Paolo Busca and
Sabina Chiriotti and
Ivan Chsherbakov and
Roberto Dinapoli and
Pablo Fajardo and
Erik Fr{\"{o}}jdh and
Shqipe Hasanaj and
Pawel Kozlowski and
Carlos Lopez Cuenca and
Anastassiya Lozinskaya and
Markus Meyer and
Davide Mezza and
Aldo Mozzanica and
Sophie Redford and
Marie Ruat and
Christian Ruder and
Bernd Schmitt and
Dhanya Thattil and
Gemma Tinti and
Oleg Tolbanov and
Anton Tyazhev and
Seraphin Vetter and
Andrei Zarubin and
Jiaguo Zhang},
title = {Characterization of Chromium Compensated GaAs Sensors with the Charge-Integrating
{JUNGFRAU} Readout Chip by Means of a Highly Collimated Pencil Beam},
journal = {Sensors},
volume = {21},
number = {4},
pages = {1550},
year = {2021},
url = {https://doi.org/10.3390/s21041550},
doi = {10.3390/S21041550},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sensors/GreiffenbergABB21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2106-13265,
author = {Parthasarathy Suryanarayanan and
Prithwish Chakraborty and
Piyush Madan and
Kibichii Bore and
William Ogallo and
Rachita Chandra and
Mohamed F. Ghalwash and
Italo Buleje and
Sekou L. Remy and
Shilpa Mahatma and
Pablo Meyer and
Jianying Hu},
title = {Disease Progression Modeling Workbench 360},
journal = {CoRR},
volume = {abs/2106.13265},
year = {2021},
url = {https://arxiv.org/abs/2106.13265},
eprinttype = {arXiv},
eprint = {2106.13265},
timestamp = {Mon, 04 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2106-13265.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2107-02359,
author = {Shruthi Chari and
Prithwish Chakraborty and
Mohamed F. Ghalwash and
Oshani Seneviratne and
Elif K. Eyig{\"{o}}z and
Daniel M. Gruen and
Fernando J. Suarez Saiz and
Ching{-}Hua Chen and
Pablo Meyer Rojas and
Deborah L. McGuinness},
title = {Leveraging Clinical Context for User-Centered Explainability: {A}
Diabetes Use Case},
journal = {CoRR},
volume = {abs/2107.02359},
year = {2021},
url = {https://arxiv.org/abs/2107.02359},
eprinttype = {arXiv},
eprint = {2107.02359},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2107-02359.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-10074,
author = {Raghav Mehta and
Angelos Filos and
Ujjwal Baid and
Chiharu Sako and
Richard McKinley and
Michael Rebsamen and
Katrin D{\"{a}}twyler and
Raphael Meier and
Piotr Radojewski and
Gowtham Krishnan Murugesan and
Sahil S. Nalawade and
Chandan Ganesh and
Benjamin C. Wagner and
Fang F. Yu and
Baowei Fei and
Ananth J. Madhuranthakam and
Joseph A. Maldjian and
Laura Alexandra Daza and
Catalina G{\'{o}}mez Caballero and
Pablo Arbel{\'{a}}ez and
Chengliang Dai and
Shuo Wang and
Hadrien Raynaud and
Yuanhan Mo and
Elsa D. Angelini and
Yike Guo and
Wenjia Bai and
Subhashis Banerjee and
Linmin Pei and
Murat Ak and
Sarahi Rosas{-}Gonz{\'{a}}lez and
Ilyess Zemmoura and
Clovis Tauber and
Minh H. Vu and
Tufve Nyholm and
Tommy L{\"{o}}fstedt and
Laura Mora Ballestar and
Ver{\'{o}}nica Vilaplana and
Hugh McHugh and
Gonzalo D. Maso Talou and
Alan Wang and
Jay B. Patel and
Ken Chang and
Katharina Hoebel and
Mishka Gidwani and
Nishanth Thumbavanam Arun and
Sharut Gupta and
Mehak Aggarwal and
Praveer Singh and
Elizabeth R. Gerstner and
Jayashree Kalpathy{-}Cramer and
Nicolas Boutry and
Alexis Huard and
Lasitha Vidyaratne and
Md Monibor Rahman and
Khan M. Iftekharuddin and
Joseph Chazalon and
{\'{E}}lodie Puybareau and
Guillaume Tochon and
Jun Ma and
Mariano Cabezas and
Xavier Llad{\'{o}} and
Arnau Oliver and
Liliana Valencia and
Sergi Valverde and
Mehdi Amian and
Mohammadreza Soltaninejad and
Andriy Myronenko and
Ali Hatamizadeh and
Xue Feng and
Quan Dou and
Nicholas J. Tustison and
Craig H. Meyer and
Nisarg A. Shah and
Sanjay N. Talbar and
Marc{-}Andr{\'{e}} Weber and
Abhishek Mahajan and
Andr{\'{a}}s Jakab and
Roland Wiest and
Hassan M. Fathallah{-}Shaykh and
Arash Nazeri and
Mikhail Milchenko and
Daniel S. Marcus and
Aikaterini Kotrotsou and
Rivka Colen and
John B. Freymann and
Justin S. Kirby and
Christos Davatzikos and
Bjoern H. Menze and
Spyridon Bakas and
Yarin Gal and
Tal Arbel},
title = {QU-BraTS: {MICCAI} BraTS 2020 Challenge on Quantifying Uncertainty
in Brain Tumor Segmentation - Analysis of Ranking Metrics and Benchmarking
Results},
journal = {CoRR},
volume = {abs/2112.10074},
year = {2021},
url = {https://arxiv.org/abs/2112.10074},
eprinttype = {arXiv},
eprint = {2112.10074},
timestamp = {Wed, 28 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-10074.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/PapatheodorouMM20,
author = {Irene Papatheodorou and
Pablo A. Moreno and
Jonathan R. Manning and
Alfonso Mu{\~{n}}oz{-}Pomer Fuentes and
Nancy George and
Silvie Fexova and
Nuno A. Fonseca and
Anja F{\"{u}}llgrabe and
Matthew Green and
Ni Huang and
Laura Huerta and
Haider Iqbal and
Monica Jianu and
Suhaib Mohammed and
Lingyun Zhao and
Andrew F. Jarnuczak and
Simon Jupp and
John C. Marioni and
Kerstin B. Meyer and
Robert Petryszak and
Cesar Augusto Prada Medina and
Carlos Talavera{-}L{\'{o}}pez and
Sarah A. Teichmann and
Juan Antonio Vizca{\'{\i}}no and
Alvis Brazma},
title = {Expression Atlas update: from tissues to single cells},
journal = {Nucleic Acids Res.},
volume = {48},
number = {Database-Issue},
pages = {D77--D83},
year = {2020},
url = {https://doi.org/10.1093/nar/gkz947},
doi = {10.1093/NAR/GKZ947},
timestamp = {Wed, 24 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/PapatheodorouMM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tjs/MorinigoGRGMG20,
author = {Jos{\'{e}} A. Mor{\'{\i}}{\~{n}}igo and
Pablo Garc{\'{\i}}a{-}Muller and
Antonio J. Rubio{-}Montero and
Antonio G{\'{o}}mez{-}Iglesias and
Norbert Meyer and
Rafael Mayo Garc{\'{\i}}a},
title = {Performance drop at executing communication-intensive parallel algorithms},
journal = {J. Supercomput.},
volume = {76},
number = {9},
pages = {6834--6859},
year = {2020},
url = {https://doi.org/10.1007/s11227-019-03142-8},
doi = {10.1007/S11227-019-03142-8},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tjs/MorinigoGRGMG20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/carla/MorinigoGRGMG18,
author = {Jos{\'{e}} A. Mor{\'{\i}}{\~{n}}igo and
Pablo Garc{\'{\i}}a{-}Muller and
Antonio J. Rubio{-}Montero and
Antonio G{\'{o}}mez{-}Iglesias and
Norbert Meyer and
Rafael Mayo{-}Garc{\'{\i}}a},
editor = {Esteban Meneses and
Harold Castro and
Carlos Jaime Barrios Hern{\'{a}}ndez and
Ra{\'{u}}l Ramos{-}Poll{\'{a}}n},
title = {Benchmarking {LAMMPS:} Sensitivity to Task Location Under CPU-Based
Weak-Scaling},
booktitle = {High Performance Computing - 5th Latin American Conference, {CARLA}
2018, Bucaramanga, Colombia, September 26-28, 2018, Revised Selected
Papers},
series = {Communications in Computer and Information Science},
volume = {979},
pages = {224--238},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-3-030-16205-4\_17},
doi = {10.1007/978-3-030-16205-4\_17},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/carla/MorinigoGRGMG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BiehlSBBDMNRZH15,
author = {Michael Biehl and
Peter J. Sadowski and
Gyan Bhanot and
Erhan Bilal and
Adel Dayarian and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Michael D. Zeller and
Sahand Hormoz},
title = {Inter-species prediction of protein phosphorylation in the sbv {IMPROVER}
species translation challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {453--461},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu407},
doi = {10.1093/BIOINFORMATICS/BTU407},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BiehlSBBDMNRZH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15,
author = {Erhan Bilal and
Theodore Sakellaropoulos and
Challenge Participants and
Ioannis N. Melas and
Dimitris E. Messinis and
Vincenzo Belcastro and
Kahn Rhrissorrakrai and
Pablo Meyer and
Raquel Norel and
Anita Iskandar and
Elise Blaese and
John Jeremy Rice and
Manuel C. Peitsch and
Julia Hoeng and
Gustavo Stolovitzky and
Leonidas G. Alexopoulos and
Carine Poussin},
title = {A crowd-sourcing approach for the construction of species-specific
cell signaling networks},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {484--491},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu659},
doi = {10.1093/BIOINFORMATICS/BTU659},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/BilalSPMMBRMNIBRPHSAP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/DayarianRWBBHMNRBLT15,
author = {Adel Dayarian and
Roberto Romero and
Zhiming Wang and
Michael Biehl and
Erhan Bilal and
Sahand Hormoz and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Gyan Bhanot and
Feng Luo and
Adi L. Tarca},
title = {Predicting protein phosphorylation from gene expression: top methods
from the {IMPROVER} Species Translation Challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {462--470},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu490},
doi = {10.1093/BIOINFORMATICS/BTU490},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/DayarianRWBBHMNRBLT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HafemeisterRBMNRBT15,
author = {Christoph Hafemeister and
Roberto Romero and
Erhan Bilal and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Richard Bonneau and
Adi L. Tarca},
title = {Inter-species pathway perturbation prediction via data-driven detection
of functional homology},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {501--508},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu570},
doi = {10.1093/BIOINFORMATICS/BTU570},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HafemeisterRBMNRBT15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HoengPMJ15,
author = {Julia Hoeng and
Manuel C. Peitsch and
Pablo Meyer and
Igor Jurisica},
title = {Where are we at regarding species translation? {A} review of the sbv
{IMPROVER} challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {451--452},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btv065},
doi = {10.1093/BIOINFORMATICS/BTV065},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HoengPMJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HormozBBBMNRD15,
author = {Sahand Hormoz and
Gyan Bhanot and
Michael Biehl and
Erhan Bilal and
Pablo Meyer and
Raquel Norel and
Kahn Rhrissorrakrai and
Adel Dayarian},
title = {Inter-species inference of gene set enrichment in lung epithelial
cells from proteomic and large transcriptomic datasets},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {492--500},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu569},
doi = {10.1093/BIOINFORMATICS/BTU569},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HormozBBBMNRD15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15,
author = {Kahn Rhrissorrakrai and
Vincenzo Belcastro and
Erhan Bilal and
Raquel Norel and
Carine Poussin and
Carole Mathis and
R{\'{e}}mi H. J. Dulize and
Nikolai V. Ivanov and
Leonidas G. Alexopoulos and
John Jeremy Rice and
Manuel C. Peitsch and
Gustavo Stolovitzky and
Pablo Meyer and
Julia Hoeng},
title = {Understanding the limits of animal models as predictors of human biology:
lessons learned from the sbv {IMPROVER} Species Translation Challenge},
journal = {Bioinform.},
volume = {31},
number = {4},
pages = {471--483},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu611},
doi = {10.1093/BIOINFORMATICS/BTU611},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/RhrissorrakraiBBNPMDIARPSMH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/GiffordM15,
author = {Stacey M. Gifford and
Pablo Meyer},
title = {Enzyme function is regulated by its localization},
journal = {Comput. Biol. Chem.},
volume = {59},
pages = {113--122},
year = {2015},
url = {https://doi.org/10.1016/j.compbiolchem.2015.08.004},
doi = {10.1016/J.COMPBIOLCHEM.2015.08.004},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/GiffordM15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/Hernandez-Lemus15,
author = {Enrique Hern{\'{a}}ndez{-}Lemus and
Wentian Li and
Pablo Meyer},
title = {Advances in systems biology - New trends and perspectives},
journal = {Comput. Biol. Chem.},
volume = {59},
pages = {1--2},
year = {2015},
url = {https://doi.org/10.1016/j.compbiolchem.2015.09.001},
doi = {10.1016/J.COMPBIOLCHEM.2015.09.001},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/Hernandez-Lemus15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/KarrWZRSTKWABHK15,
author = {Jonathan R. Karr and
Alex H. Williams and
Jeremy D. Zucker and
Andreas Raue and
Bernhard Steiert and
Jens Timmer and
Clemens Kreutz and
Simon Wilkinson and
Brandon A. Allgood and
Brian M. Bot and
Bruce R. Hoff and
Michael R. Kellen and
Markus W. Covert and
Gustavo A. Stolovitzky and
Pablo Meyer},
title = {Summary of the {DREAM8} Parameter Estimation Challenge: Toward Parameter
Identification for Whole-Cell Models},
journal = {PLoS Comput. Biol.},
volume = {11},
number = {5},
year = {2015},
url = {https://doi.org/10.1371/journal.pcbi.1004096},
doi = {10.1371/JOURNAL.PCBI.1004096},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ploscb/KarrWZRSTKWABHK15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/CokelaerBBBBNEGHHKKMMNPPW15,
author = {Thomas Cokelaer and
Mukesh Bansal and
Christopher Bare and
Erhan Bilal and
Brian M. Bot and
Elias Chaibub Neto and
Federica Eduati and
Mehmet G{\"{o}}nen and
Steven M. Hill and
Bruce R. Hoff and
Jonathan R. Karr and
Robert K{\"{u}}ffner and
Michael P. Menden and
Pablo Meyer and
Raquel Norel and
Abhishek Pratap and
Robert J. Prill and
Matthew T. Weirauch and
James C. Costello and
Gustavo Stolovitzky and
Julio Saez{-}Rodriguez},
title = {DREAMTools: a Python package for scoring collaborative challenges},
journal = {F1000Research},
volume = {4},
pages = {1030},
year = {2015},
url = {https://doi.org/10.12688/f1000research.7118.1},
doi = {10.12688/F1000RESEARCH.7118.1},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/f1000research/CokelaerBBBBNEGHHKKMMNPPW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeyerCCKLTLBKRSTBSSS14,
author = {Pablo Meyer and
Thomas Cokelaer and
Deepak Chandran and
Kyung Hyuk Kim and
Po{-}Ru Loh and
George Tucker and
Mark Lipson and
Bonnie Berger and
Clemens Kreutz and
Andreas Raue and
Bernhard Steiert and
Jens Timmer and
Erhan Bilal and
Herbert M. Sauro and
Gustavo Stolovitzky and
Julio Saez{-}Rodriguez},
title = {Network topology and parameter estimation: from experimental design
methods to gene regulatory network kinetics using a community based
approach},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {13},
year = {2014},
url = {https://doi.org/10.1186/1752-0509-8-13},
doi = {10.1186/1752-0509-8-13},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCCKLTLBKRSTBSSS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcsb/MeyerCS14,
author = {Pablo Meyer and
Guillermo A. Cecchi and
Gustavo Stolovitzky},
title = {Spatial localization of the first and last enzymes effectively connects
active metabolic pathways in bacteria},
journal = {{BMC} Syst. Biol.},
volume = {8},
pages = {131},
year = {2014},
url = {https://doi.org/10.1186/s12918-014-0131-1},
doi = {10.1186/S12918-014-0131-1},
timestamp = {Fri, 01 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcsb/MeyerCS14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/neuroimage/SuridjanRVSSSWMHM14,
author = {I. Suridjan and
Pablo Rusjan and
Aristotle N. Voineskos and
T. Selvanathan and
Elaine Setiawan and
Antonio P. Strafella and
Alan A. Wilson and
Jeffrey H. Meyer and
Sylvain Houle and
Romina Mizrahi},
title = {Neuroinflammation in healthy aging: {A} {PET} study using a novel
Translocator Protein 18 kDa {(TSPO)} radioligand, [\({}^{\mbox{18}}\)F]-FEPPA},
journal = {NeuroImage},
volume = {84},
pages = {868--875},
year = {2014},
url = {https://doi.org/10.1016/j.neuroimage.2013.09.021},
doi = {10.1016/J.NEUROIMAGE.2013.09.021},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/neuroimage/SuridjanRVSSSWMHM14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13,
author = {Adi L. Tarca and
Mario Lauria and
Michael Unger and
Erhan Bilal and
St{\'{e}}phanie Bou{\'{e}} and
Kushal Kumar Dey and
Julia Hoeng and
Heinz Koeppl and
Florian Martin and
Pablo Meyer and
Preetam Nandy and
Raquel Norel and
Manuel C. Peitsch and
John Jeremy Rice and
Roberto Romero and
Gustavo Stolovitzky and
Marja Talikka and
Yang Xiang and
Christoph Zechner and
Improver Dsc Collaborators},
title = {Strengths and limitations of microarray-based phenotype prediction:
lessons learned from the {IMPROVER} Diagnostic Signature Challenge},
journal = {Bioinform.},
volume = {29},
number = {22},
pages = {2892--2899},
year = {2013},
url = {https://doi.org/10.1093/bioinformatics/btt492},
doi = {10.1093/BIOINFORMATICS/BTT492},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/TarcaLUBBDHKMMNNPRRSTXZC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/MeyerHRNSSBCRPS12,
author = {Pablo Meyer and
Julia Hoeng and
John Jeremy Rice and
Raquel Norel and
J{\"{o}}rg Sprengel and
Katrin Stolle and
Thomas Bonk and
Stephanie Corthesy and
Ajay K. Royyuru and
Manuel C. Peitsch and
Gustavo Stolovitzky},
title = {Industrial methodology for process verification in research {(IMPROVER):}
toward systems biology verification},
journal = {Bioinform.},
volume = {28},
number = {9},
pages = {1193--1201},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/bts116},
doi = {10.1093/BIOINFORMATICS/BTS116},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/MeyerHRNSSBCRPS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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