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@article{DBLP:journals/nar/HarrisACCCC0GGK20,
  author       = {Todd W. Harris and
                  Valerio Arnaboldi and
                  Scott Cain and
                  Juancarlos Chan and
                  Wen J. Chen and
                  Jae{-}Hyoung Cho and
                  Paul Davis and
                  Sibyl Gao and
                  Christian A. Grove and
                  Ranjana Kishore and
                  Raymond Y. N. Lee and
                  Hans{-}Michael M{\"{u}}ller and
                  Cecilia Nakamura and
                  Paulo A. S. Nuin and
                  Michael Paulini and
                  Daniela Raciti and
                  Faye Rodgers and
                  Matthew Russell and
                  Gary Schindelman and
                  Kimberly Van Auken and
                  Qinghua Wang and
                  Gary Williams and
                  Adam Wright and
                  Karen Yook and
                  Kevin L. Howe and
                  Tim Schedl and
                  Lincoln Stein and
                  Paul W. Sternberg},
  title        = {WormBase: a modern Model Organism Information Resource},
  journal      = {Nucleic Acids Res.},
  volume       = {48},
  number       = {Database-Issue},
  pages        = {D762--D767},
  year         = {2020},
  url          = {https://doi.org/10.1093/nar/gkz920},
  doi          = {10.1093/NAR/GKZ920},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HarrisACCCC0GGK20.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/LeeHHACCCDGGKMN18,
  author       = {Raymond Y. N. Lee and
                  Kevin L. Howe and
                  Todd W. Harris and
                  Valerio Arnaboldi and
                  Scott Cain and
                  Juancarlos Chan and
                  Wen J. Chen and
                  Paul Davis and
                  Sibyl Gao and
                  Christian A. Grove and
                  Ranjana Kishore and
                  Hans{-}Michael M{\"{u}}ller and
                  Cecilia Nakamura and
                  Paulo A. S. Nuin and
                  Michael Paulini and
                  Daniela Raciti and
                  Faye Rodgers and
                  Matthew Russell and
                  Gary Schindelman and
                  Mary Ann Tuli and
                  Kimberly Van Auken and
                  Qinghua Wang and
                  Gary Williams and
                  Adam Wright and
                  Karen Yook and
                  Matthew Berriman and
                  Paul J. Kersey and
                  Tim Schedl and
                  Lincoln Stein and
                  Paul W. Sternberg},
  title        = {WormBase 2017: molting into a new stage},
  journal      = {Nucleic Acids Res.},
  volume       = {46},
  number       = {Database-Issue},
  pages        = {D869--D874},
  year         = {2018},
  url          = {https://doi.org/10.1093/nar/gkx998},
  doi          = {10.1093/NAR/GKX998},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/LeeHHACCCDGGKMN18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nar/HoweBCCCDDDGGHK16,
  author       = {Kevin L. Howe and
                  Bruce J. Bolt and
                  Scott Cain and
                  Juancarlos Chan and
                  Wen J. Chen and
                  Paul Davis and
                  James Done and
                  Thomas A. Down and
                  Sibyl Gao and
                  Christian A. Grove and
                  Todd W. Harris and
                  Ranjana Kishore and
                  Raymond Y. N. Lee and
                  Jane Lomax and
                  Yuling Li and
                  Hans{-}Michael M{\"{u}}ller and
                  Cecilia Nakamura and
                  Paulo A. S. Nuin and
                  Michael Paulini and
                  Daniela Raciti and
                  Gary Schindelman and
                  Eleanor Stanley and
                  Mary Ann Tuli and
                  Kimberly Van Auken and
                  Daniel Wang and
                  Xiaodong Wang and
                  Gary Williams and
                  Adam Wright and
                  Karen Yook and
                  Matthew Berriman and
                  Paul J. Kersey and
                  Tim Schedl and
                  Lincoln Stein and
                  Paul W. Sternberg},
  title        = {WormBase 2016: expanding to enable helminth genomic research},
  journal      = {Nucleic Acids Res.},
  volume       = {44},
  number       = {Database-Issue},
  pages        = {774--780},
  year         = {2016},
  url          = {https://doi.org/10.1093/nar/gkv1217},
  doi          = {10.1093/NAR/GKV1217},
  timestamp    = {Mon, 08 Apr 2024 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/HoweBCCCDDDGGHK16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bioinformatics/GeraciDNHKFE14,
  author       = {Joseph Geraci and
                  Moyez Dharsee and
                  Paulo A. S. Nuin and
                  Alexandria Haslehurst and
                  Madhuri Koti and
                  Harriet E. Feilotter and
                  Kenneth R. Evans},
  title        = {Exploring high dimensional data with Butterfly: a novel classification
                  algorithm based on discrete dynamical systems},
  journal      = {Bioinform.},
  volume       = {30},
  number       = {5},
  pages        = {712--718},
  year         = {2014},
  url          = {https://doi.org/10.1093/bioinformatics/btt602},
  doi          = {10.1093/BIOINFORMATICS/BTT602},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/GeraciDNHKFE14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/NuinWT06,
  author       = {Paulo A. S. Nuin and
                  Zhouzhi Wang and
                  Elisabeth R. M. Tillier},
  title        = {The accuracy of several multiple sequence alignment programs for proteins},
  journal      = {{BMC} Bioinform.},
  volume       = {7},
  pages        = {471},
  year         = {2006},
  url          = {https://doi.org/10.1186/1471-2105-7-471},
  doi          = {10.1186/1471-2105-7-471},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/NuinWT06.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bib/Nuin05,
  author       = {Paulo A. S. Nuin},
  title        = {WinPop 2.5: Software for representing population genetics phenomena},
  journal      = {Briefings Bioinform.},
  volume       = {6},
  number       = {4},
  pages        = {390--393},
  year         = {2005},
  url          = {https://doi.org/10.1093/bib/6.4.390},
  doi          = {10.1093/BIB/6.4.390},
  timestamp    = {Thu, 04 Jun 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bib/Nuin05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/PangSNT05,
  author       = {Andy Pang and
                  Andrew D. Smith and
                  Paulo A. S. Nuin and
                  Elisabeth R. M. Tillier},
  title        = {{SIMPROT:} Using an empirically determined indel distribution in simulations
                  of protein evolution},
  journal      = {{BMC} Bioinform.},
  volume       = {6},
  pages        = {236},
  year         = {2005},
  url          = {https://doi.org/10.1186/1471-2105-6-236},
  doi          = {10.1186/1471-2105-6-236},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/PangSNT05.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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