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@article{DBLP:journals/bmcbi/Matey-Hernandez18,
  author       = {Maria Luisa Matey{-}Hernandez and
                  Lasse Maretty and
                  Jacob Malte Jensen and
                  Bent Petersen and
                  Jonas Andreas Sibbesen and
                  Siyang Liu and
                  Palle Villesen and
                  Laurits Skov and
                  Kirstine Belling and
                  Christian Theil Have and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Marie Grosjean and
                  Jette Bork{-}Jensen and
                  Jakob Grove and
                  Thomas D. Als and
                  Shujia Huang and
                  Yuqi Chang and
                  Ruiqi Xu and
                  Weijian Ye and
                  Junhua Rao and
                  Xiaosen Guo and
                  Jihua Sun and
                  Hongzhi Cao and
                  Chen Ye and
                  John van Beusekom and
                  Thomas Espeseth and
                  Esben N. Flindt and
                  Rune M. Friborg and
                  Anders E. Halager and
                  Stephanie Le Hellard and
                  Christina M. Hultman and
                  Francesco Lescai and
                  Shengting Li and
                  Ole Lund and
                  Peter L{\o}ngreen and
                  Thomas Mailund and
                  Ole Mors and
                  Christian N. S. Pedersen and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Patrick F. Sullivan and
                  Ali Syed and
                  David Westergaard and
                  Rachita Yadav and
                  Ning Li and
                  Xun Xu and
                  Torben Hansen and
                  Anders Krogh and
                  Lars Bolund and
                  Thorkild I. A. S{\o}rensen and
                  Oluf Pedersen and
                  Ramneek Gupta and
                  Simon Rasmussen and
                  S{\o}ren Besenbacher and
                  Anders D. B{\o}rglum and
                  Jun Wang and
                  Hans Eiberg and
                  Karsten Kristiansen and
                  Mikkel Heide Schierup and
                  S{\o}ren Brunak},
  title        = {Benchmarking the {HLA} typing performance of Polysolver and Optitype
                  in 50 Danish parental trios},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {239:1--239:12},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2239-6},
  doi          = {10.1186/S12859-018-2239-6},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Matey-Hernandez18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/Al-NakeebPS17,
  author       = {Kosai Al{-}Nakeeb and
                  Thomas Nordahl Petersen and
                  Thomas Sicheritz{-}Pont{\'{e}}n},
  title        = {Norgal: extraction and de novo assembly of mitochondrial {DNA} from
                  whole-genome sequencing data},
  journal      = {{BMC} Bioinform.},
  volume       = {18},
  number       = {1},
  pages        = {510},
  year         = {2017},
  url          = {https://doi.org/10.1186/s12859-017-1927-y},
  doi          = {10.1186/S12859-017-1927-Y},
  timestamp    = {Wed, 18 May 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/Al-NakeebPS17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nature/MarettyJPSLVSBH17,
  author       = {Lasse Maretty and
                  Jacob Malte Jensen and
                  Bent Petersen and
                  Jonas Andreas Sibbesen and
                  Siyang Liu and
                  Palle Villesen and
                  Laurits Skov and
                  Kirstine Belling and
                  Christian Theil Have and
                  Jos{\'{e}} M. G. Izarzugaza and
                  Marie Grosjean and
                  Jette Bork{-}Jensen and
                  Jakob Grove and
                  Thomas D. Als and
                  Shujia Huang and
                  Yuqi Chang and
                  Ruiqi Xu and
                  Weijian Ye and
                  Junhua Rao and
                  Xiaosen Guo and
                  Jihua Sun and
                  Hongzhi Cao and
                  Chen Ye and
                  John van Beusekom and
                  Thomas Espeseth and
                  Esben N. Flindt and
                  Rune M. Friborg and
                  Anders E. Halager and
                  Stephanie Le Hellard and
                  Christina M. Hultman and
                  Francesco Lescai and
                  Shengting Li and
                  Ole Lund and
                  Peter L{\o}ngreen and
                  Thomas Mailund and
                  Maria Luisa Matey{-}Hernandez and
                  Ole Mors and
                  Christian N. S. Pedersen and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Patrick F. Sullivan and
                  Ali Syed and
                  David Westergaard and
                  Rachita Yadav and
                  Ning Li and
                  Xun Xu and
                  Torben Hansen and
                  Anders Krogh and
                  Lars Bolund and
                  Thorkild I. A. S{\o}rensen and
                  Oluf Pedersen and
                  Ramneek Gupta and
                  Simon Rasmussen and
                  S{\o}ren Besenbacher and
                  Anders D. B{\o}rglum and
                  Jun Wang and
                  Hans Eiberg and
                  Karsten Kristiansen and
                  S{\o}ren Brunak and
                  Mikkel Heide Schierup},
  title        = {Sequencing and \emph{de novo} assembly of 150 genomes from Denmark
                  as a population reference},
  journal      = {Nat.},
  volume       = {548},
  number       = {7665},
  pages        = {87--91},
  year         = {2017},
  url          = {https://doi.org/10.1038/nature23264},
  doi          = {10.1038/NATURE23264},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nature/MarettyJPSLVSBH17.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/SaputraRLHSALS15,
  author       = {Dhany Saputra and
                  Simon Rasmussen and
                  Mette V. Larsen and
                  Nizar Haddad and
                  Maria Sperotto and
                  Frank Aarestrup and
                  Ole Lund and
                  Thomas Sicheritz{-}Pont{\'{e}}n},
  title        = {Reads2Type: a web application for rapid microbial taxonomy identification},
  journal      = {{BMC} Bioinform.},
  volume       = {16},
  pages        = {398:1--398:10},
  year         = {2015},
  url          = {https://doi.org/10.1186/s12859-015-0829-0},
  doi          = {10.1186/S12859-015-0829-0},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/SaputraRLHSALS15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/nature/ArumugamRPPYMFT14,
  author       = {Manimozhiyan Arumugam and
                  Jeroen Raes and
                  Eric Pelletier and
                  Denis Le Paslier and
                  Takuji Yamada and
                  Daniel R. Mende and
                  Gabriel R. Fernandes and
                  Julien Tap and
                  Thomas Br{\"{u}}ls and
                  Jean{-}Michel Batto and
                  Marcelo Bertalan and
                  Natalia Borruel and
                  Francesc Casellas and
                  Leyden Fern{\'{a}}ndez and
                  Laurent Gautier and
                  Torben Hansen and
                  Masahira Hattori and
                  Tetsuya Hayashi and
                  Michiel Kleerebezem and
                  Ken Kurokawa and
                  Marion Leclerc and
                  Florence Levenez and
                  Chaysavanh Manichanh and
                  Henrik Bj{\o}rn Nielsen and
                  Trine Rask Nielsen and
                  Nicolas Pons and
                  Julie Poulain and
                  Junjie Qin and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Sebastian Tims and
                  David Torrents and
                  Edgardo Ugarte and
                  Erwin G. Zoetendal and
                  Jun Wang and
                  Francisco Guarner and
                  Oluf Pedersen and
                  Willem M. de Vos and
                  S{\o}ren Brunak and
                  Jo{\"{e}}l Dore and
                  MetaHIT consortium and
                  Jean Weissenbach and
                  S. Dusko Ehrlich and
                  Peer Bork},
  title        = {Addendum: Enterotypes of the human gut microbiome},
  journal      = {Nat.},
  volume       = {506},
  number       = {7489},
  pages        = {516},
  year         = {2014},
  url          = {https://doi.org/10.1038/nature13075},
  doi          = {10.1038/NATURE13075},
  timestamp    = {Mon, 05 Feb 2024 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/nature/ArumugamRPPYMFT14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}

@article{DBLP:journals/bmcbi/DiellaCGLVKSBG04,
  author       = {Francesca Diella and
                  Scott Cameron and
                  Christine Gem{\"{u}}nd and
                  Rune Linding and
                  Allegra Via and
                  Bernhard K{\"{u}}ster and
                  Thomas Sicheritz{-}Pont{\'{e}}n and
                  Nikolaj Blom and
                  Toby J. Gibson},
  title        = {Phospho.ELM: {A} database of experimentally verified phosphorylation
                  sites in eukaryotic proteins},
  journal      = {{BMC} Bioinform.},
  volume       = {5},
  pages        = {79},
  year         = {2004},
  url          = {https://doi.org/10.1186/1471-2105-5-79},
  doi          = {10.1186/1471-2105-5-79},
  timestamp    = {Sun, 15 Mar 2020 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DiellaCGLVKSBG04.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
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