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Publication search results
found 31 matches
- 2024
- Patrick Blumenkamp, Max Pfister, Sonja Diedrich, Karina Brinkrolf, Sebastian Jaenicke, Alexander Goesmann:
Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data. BMC Bioinform. 25(1): 138 (2024) - 2023
- Marius A. Dieckmann, Sebastian Beyvers, Jannis Hochmuth, Anna Rehm, Frank Förster, Alexander Goesmann:
The Aruna Object Storage A Distributed Multi Cloud Object Storage System for Scientific Data Management. CoRDI 2023 - Michael Diepenbroek, Ivaylo Kostadinov, Bernhard Seeger, Frank Oliver Glöckner, Marius A. Dieckmann, Alexander Goesmann, Barbara Ebert, Sonja Schimmler, York Sure-Vetter:
Towards a Research Data Commons in the German National Research Data Infrastructure NFDI: Vision, Governance, Architecture. CoRDI 2023 - Nils Hoffmann, Irena Maus, Sebastian Beier, Peter Belmann, Jan Krüger, Andreas Tauch, Alexander Goesmann, Roland Eils, Peer Bork, Oliver Kohlbacher, Ursula Kummer, Rolf Backofen, Ivo Buchhalter, Alexander Sczyrba:
Embedding the de.NBI Cloud in the National Research Data Infrastructure Activities. CoRDI 2023 - 2022
- Yunxiao Ren, Trinad Chakraborty, Swapnil Doijad, Linda Falgenhauer, Jane Falgenhauer, Alexander Goesmann, Anne-Christin Hauschild, Oliver Schwengers, Dominik Heider:
Prediction of antimicrobial resistance based on whole-genome sequencing and machine learning. Bioinform. 38(2): 325-334 (2022) - 2021
- Marius A. Dieckmann, Sebastian Beyvers, Rudel Christian Nkouamedjo-Fankep, Patrick Harald Georg Hanel, Lukas Jelonek, Jochen Blom, Alexander Goesmann:
EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure. Nucleic Acids Res. 49(Webserver-Issue): 185-192 (2021) - 2020
- Oliver Schwengers, Torsten Hain, Trinad Chakraborty, Alexander Goesmann:
ReferenceSeeker: rapid determination of appropriate reference genomes. J. Open Source Softw. 5(46): 1994 (2020) - Oliver Schwengers, Andreas Hoek, Moritz Fritzenwanker, Linda Falgenhauer, Torsten Hain, Trinad Chakraborty, Alexander Goesmann:
ASA3P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates. PLoS Comput. Biol. 16(3) (2020) - 2016
- Rolf Hilker, Kai Bernd Stadermann, Oliver Schwengers, Evgeny Anisiforov, Sebastian Jaenicke, Bernd Weisshaar, Tobias Zimmermann, Alexander Goesmann:
ReadXplorer 2 - detailed read mapping analysis and visualization from one single source. Bioinform. 32(24): 3702-3708 (2016) - Jochen Blom, Julian Kreis, Sebastian Spänig, Tobias Juhre, Claire Bertelli, Corinna Ernst, Alexander Goesmann:
EDGAR 2.0: an enhanced software platform for comparative gene content analyses. Nucleic Acids Res. 44(Webserver-Issue): W22-W28 (2016) - 2014
- Rolf Hilker, Kai Bernd Stadermann, Daniel Doppmeier, Jörn Kalinowski, Jens Stoye, Jasmin Straube, Jörn Winnebald, Alexander Goesmann:
ReadXplorer - visualization and analysis of mapped sequences. Bioinform. 30(16): 2247-2254 (2014) - Daniel Langenkämper, Alexander Goesmann, Tim W. Nattkemper:
AKE - the Accelerated k-mer Exploration web-tool for rapid taxonomic classification and visualization. BMC Bioinform. 15: 384 (2014) - Juliane C. Dohm, André E. Minoche, Daniela Holtgräwe, Salvador Capella-Gutiérrez, Falk Zakrzewski, Hakim Tafer, Oliver Rupp, Thomas Rosleff Sörensen, Ralf Stracke, Richard Reinhardt, Alexander Goesmann, Thomas Kraft, Britta Schulz, Peter F. Stadler, Thomas Schmidt, Toni Gabaldón, Hans Lehrach, Bernd Weisshaar, Heinz Himmelbauer:
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) Open. Nat. 505(7484): 546-549 (2014) - 2013
- Nikolas Kessler, Heiko Neuweger, Anja Bonte, Georg Langenkämper, Karsten Niehaus, Tim W. Nattkemper, Alexander Goesmann:
MeltDB 2.0-advances of the metabolomics software system. Bioinform. 29(19): 2452-2459 (2013) - 2011
- Jochen Blom, Tobias Jakobi, Daniel Doppmeier, Sebastian Jaenicke, Jörn Kalinowski, Jens Stoye, Alexander Goesmann:
Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming. Bioinform. 27(10): 1351-1358 (2011) - Burkhard Linke, Robert Giegerich, Alexander Goesmann:
Conveyor: a workflow engine for bioinformatic analyses. Bioinform. 27(7): 903-911 (2011) - 2009
- Stefan P. Albaum, Heiko Neuweger, Benjamin Fränzel, Sita Lange, Dominik Mertens, Christian Trötschel, Dirk Wolters, Jörn Kalinowski, Tim W. Nattkemper, Alexander Goesmann:
Qupe - a Rich Internet Application to take a step forward in the analysis of mass spectrometry-based quantitative proteomics experiments. Bioinform. 25(23): 3128-3134 (2009) - Jochen Blom, Stefan P. Albaum, Daniel Doppmeier, Alfred Pühler, Frank-Jörg Vorhölter, Martha Zakrzewski, Alexander Goesmann:
EDGAR: A software framework for the comparative analysis of prokaryotic genomes. BMC Bioinform. 10 (2009) - Naryttza N. Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim W. Nattkemper:
TACOA - Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinform. 10 (2009) - Michael Dondrup, Stefan P. Albaum, Thasso Griebel, Kolja Henckel, Sebastian Jünemann, Tim Kahlke, Christiane K. Kleindt, Helge Küster, Burkhard Linke, Dominik Mertens, Virginie Mittard-Runte, Heiko Neuweger, Kai J. Runte, Andreas Tauch, Felix Tille, Alfred Pühler, Alexander Goesmann:
EMMA 2 - A MAGE-compliant system for the collaborative analysis and integration of microarray data. BMC Bioinform. 10 (2009) - Wolfgang Gerlach, Sebastian Jünemann, Felix Tille, Alexander Goesmann, Jens Stoye:
WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads. BMC Bioinform. 10: 430 (2009) - Heiko Neuweger, Marcus Persicke, Stefan P. Albaum, Thomas Bekel, Michael Dondrup, Andrea T. Hüser, Jörn Winnebald, Jessica Schneider, Jörn Kalinowski, Alexander Goesmann:
Visualizing post genomics data-sets on customized pathway maps by ProMeTra - aeration-dependent gene expression and metabolism of Corynebacterium glutamicum as an example. BMC Syst. Biol. 3: 82 (2009) - Justina Krawczyk, Alexander Goesmann, Ralf Nolte, Martin Werber, Bernd Weisshaar:
Trace2PS and FSA2PS: two software toolkits for converting trace and fsa files to PostScript format. Source Code Biol. Medicine 4: 4 (2009) - 2008
- Heiko Neuweger, Stefan P. Albaum, Michael Dondrup, Marcus Persicke, Tony Watt, Karsten Niehaus, Jens Stoye, Alexander Goesmann:
MeltDB: a software platform for the analysis and integration of metabolomics experiment data. Bioinform. 24(23): 2726-2732 (2008) - Sebastian Oehm, David R. Gilbert, Andreas Tauch, Jens Stoye, Alexander Goesmann:
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. Nucleic Acids Res. 36(Web-Server-Issue): 433-437 (2008) - 2007
- Heiko Neuweger, Jan Baumbach, Stefan P. Albaum, Thomas Bekel, Michael Dondrup, Andrea T. Hüser, Jörn Kalinowski, Sebastian Oehm, Alfred Pühler, Sven Rahmann, Jochen Weile, Alexander Goesmann:
CoryneCenter - An online resource for the integrated analysis of corynebacterial genome and transcriptome data. BMC Syst. Biol. 1: 55 (2007) - 2005
- Daniela Bartels, Sebastian Kespohl, Stefan P. Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster:
BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinform. 21(7): 853-859 (2005) - Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer:
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Res. 33(Web-Server-Issue): 710-716 (2005) - 2004
- Alexander Goesmann:
BRIDGE: a bioinformatics software platform for the integration of heterogeneous data from genomic explorations. Bielefeld University, Germany, 2004 - Alice Carolyn McHardy, Alexander Goesmann, Alfred Pühler, Folker Meyer:
Development of joint application strategies for two microbial gene finders. Bioinform. 20(10): 1622-1631 (2004)
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