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Publication search results
found 36 matches
- 2023
- Willow Carretero Chavez
, Marcus Krantz, Edda Klipp, Irina Kufareva
:
kboolnet: a toolkit for the verification, validation, and visualization of reaction-contingency (rxncon) models. BMC Bioinform. 24(1): 246 (2023) - 2022
- Ulrike Münzner
, Tomoya Mori
, Marcus Krantz
, Edda Klipp
, Tatsuya Akutsu
:
Identification of periodic attractors in Boolean networks using a priori information. PLoS Comput. Biol. 18(1) (2022) - 2021
- Jorin Diemer
, Jens Hahn
, Björn Goldenbogen
, Karin Müller
, Edda Klipp
:
Sperm migration in the genital tract - In silico experiments identify key factors for reproductive success. PLoS Comput. Biol. 17(7) (2021) - 2020
- Stephan O. Adler, Edda Klipp
:
Chemical Reaction Networks Possess Intrinsic, Temperature-Dependent Functionality. Entropy 22(1): 117 (2020) - Maria Krantz, Edda Klipp:
Moonlighting proteins - an approach to systematize the concept. Silico Biol. 13(3-4): 71-83 (2020) - 2019
- Andrea Auconi, Andrea Giansanti
, Edda Klipp
:
Information Thermodynamics for Time Series of Signal-Response Models. Entropy 21(2): 177 (2019) - 2018
- Arturo Blazquez-Navarro
, Thomas Schachtner
, Ulrik Stervbo
, Anett Sefrin, Maik Stein
, Timm H. Westhoff
, Petra Reinke
, Edda Klipp, Nina Babel
, Avidan U. Neumann, Michal Or-Guil
:
Differential T cell response against BK virus regulatory and structural antigens: A viral dynamics modelling approach. PLoS Comput. Biol. 14(5) (2018) - Wolfgang Giese
, Gregor Milicic
, Andreas Schröder
, Edda Klipp
:
Spatial modeling of the membrane-cytosolic interface in protein kinase signal transduction. PLoS Comput. Biol. 14(4) (2018) - 2016
- Timo Lubitz, Jens Hahn
, Frank T. Bergmann
, Elad Noor
, Edda Klipp, Wolfram Liebermeister
:
SBtab: a flexible table format for data exchange in systems biology. Bioinform. 32(16): 2559-2561 (2016) - Katarzyna M. Tyc, Sanna E. Herwald, Jennifer A. Hogan, Jessica V. Pierce, Edda Klipp, Carol A. Kumamoto
:
The game theory of Candida albicans colonization dynamics reveals host status-responsive gene expression. BMC Syst. Biol. 10: 20 (2016) - Josch Pauling, Edda Klipp:
Computational Lipidomics and Lipid Bioinformatics: Filling In the Blanks. J. Integr. Bioinform. 13(1) (2016) - Susanne Gerber
, Martina Fröhlich, Hella Lichtenberg-Fraté, Sergey Shabala
, Lana Shabala
, Edda Klipp:
A Thermodynamic Model of Monovalent Cation Homeostasis in the Yeast Saccharomyces cerevisiae. PLoS Comput. Biol. 12(1) (2016) - Max Schelker
, Caroline Maria Mair, Fabian Jolmes
, Robert-William Welke, Edda Klipp, Andreas Herrmann, Max Flöttmann, Christian Sieben
:
Viral RNA Degradation and Diffusion Act as a Bottleneck for the Influenza A Virus Infection Efficiency. PLoS Comput. Biol. 12(10) (2016) - 2015
- Andreas Raue, Bernhard Steiert, Max Schelker, Clemens Kreutz
, Tim Maiwald
, Helge Hass, Joep Vanlier, Christian Tönsing
, Lorenz Adlung
, Raphael Engesser, Wolfgang Mader, Tim Heinemann
, Jan Hasenauer
, Marcel Schilling
, Thomas Höfer
, Edda Klipp, Fabian J. Theis
, Ursula Klingmüller
, Birgit Schoeberl, Jens Timmer:
Data2Dynamics: a modeling environment tailored to parameter estimation in dynamical systems. Bioinform. 31(21): 3558-3560 (2015) - Tomoya Mori, Max Flöttmann, Marcus Krantz, Tatsuya Akutsu
, Edda Klipp:
Stochastic simulation of Boolean rxncon models: towards quantitative analysis of large signaling networks. BMC Syst. Biol. 9: 45 (2015) - Thomas W. Spiesser, Clemens Kühn
, Marcus Krantz, Edda Klipp:
Bud-Localization of CLB2 mRNA Can Constitute a Growth Rate Dependent Daughter Sizer. PLoS Comput. Biol. 11(4) (2015) - 2014
- Matthias Bock
, Till Scharp, Chaitanya Talnikar, Edda Klipp:
BooleSim: an interactive Boolean network simulator. Bioinform. 30(1): 131-132 (2014) - Max Flöttmann, Jannis Uhlendorf, Till Scharp, Edda Klipp, Thomas W. Spiesser:
SensA: web-based sensitivity analysis of SBML models. Bioinform. 30(19): 2830-2831 (2014) - Gundián M. de Hijas-Liste, Edda Klipp, Eva Balsa-Canto
, Julio R. Banga
:
Global dynamic optimization approach to predict activation in metabolic pathways. BMC Syst. Biol. 8: 1 (2014) - Christian Diener
, Gabriele Schreiber, Wolfgang Giese
, Gabriel del Rio, Andreas Schröder
, Edda Klipp:
Yeast Mating and Image-Based Quantification of Spatial Pattern Formation. PLoS Comput. Biol. 10(6) (2014) - 2013
- Falko Krause, Marvin Schulz, Ben Ripkens, Max Flöttmann, Marcus Krantz, Edda Klipp, Thomas Handorf:
Biographer: web-based editing and rendering of SBGN compliant biochemical networks. Bioinform. 29(11): 1467-1468 (2013) - Max Flöttmann, Falko Krause, Edda Klipp, Marcus Krantz:
Reaction-contingency based bipartite Boolean modelling. BMC Syst. Biol. 7: 58 (2013) - Elzbieta Petelenz-Kurdziel, Clemens Kühn
, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber
, Jens Nielsen
, Stefan Hohmann
, Edda Klipp:
Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress. PLoS Comput. Biol. 9(6) (2013) - 2012
- Thomas Handorf, Edda Klipp:
Modeling mechanistic biological networks: An advanced Boolean approach. Bioinform. 28(4): 557-563 (2012) - Marvin Schulz, Edda Klipp, Wolfram Liebermeister
:
Propagating semantic information in biochemical network models. BMC Bioinform. 13: 18 (2012) - 2011
- Szymon Stoma, Martina Fröhlich, Susanne Gerber
, Edda Klipp:
STSE: Spatio-Temporal Simulation Environment Dedicated to Biology. BMC Bioinform. 12: 126 (2011) - Dagmar Waltemath, Richard R. Adams
, Daniel A. Beard
, Frank T. Bergmann
, Upinder S. Bhalla, Randall Britten, Vijayalakshmi Chelliah
, Mike T. Cooling
, Jonathan Cooper
, Edmund J. Crampin, Alan Garny, Stefan Hoops, Michael Hucka
, Peter J. Hunter
, Edda Klipp, Camille Laibe
, Andrew K. Miller, Ion I. Moraru
, David P. Nickerson
, Poul M. F. Nielsen, Macha Nikolski, Sven Sahle, Herbert M. Sauro
, Henning Schmidt, Jacky L. Snoep
, Dominic P. Tolle
, Olaf Wolkenhauer
, Nicolas Le Novère:
Minimum Information About a Simulation Experiment (MIASE). PLoS Comput. Biol. 7(4) (2011) - 2010
- Falko Krause, Jannis Uhlendorf, Timo Lubitz, Marvin Schulz, Edda Klipp, Wolfram Liebermeister
:
Annotation and merging of SBML models with semanticSBML. Bioinform. 26(3): 421-422 (2010) - Wolfram Liebermeister
, Jannis Uhlendorf, Edda Klipp:
Modular rate laws for enzymatic reactions: thermodynamics, elasticities and implementation. Bioinform. 26(12): 1528-1534 (2010) - 2009
- Edda Klipp, Wolfram Liebermeister, Christoph K. Wierling, Axel Kowald, Hans Lehrach:
Systems Biology - a Textbook. Wiley 2009, ISBN 978-3-527-31874-2, pp. I-XXI, 1-569
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