• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 31 matches

• 2024
• 
  Abdul Haluk Batur Gezici, Emre Sefer:
  Deep Transformer-Based Asset Price and Direction Prediction. IEEE Access 12: 24164-24178 (2024)
• 
  Emre Sefer:
  Correction: Hi-C interaction graph analysis reveals the impact of histone modifications in chromatin shape. Appl. Netw. Sci. 9(1): 71 (2024)
• 2023
• 
  Necla Nisa Soylu, Emre Sefer:
  BERT2OME: Prediction of 2′-O-Methylation Modifications From RNA Sequence by Transformer Architecture Based on BERT. IEEE ACM Trans. Comput. Biol. Bioinform. 20(3): 2177-2189 (2023)
• 
  Emre Sefer, Samuel Gilmour:
  Optimal Reconstruction of Graph Evolution Dynamics for Duplication-Based Models. COMPLEX NETWORKS (2) 2023: 470-483
• 
  Betul Seyhan, Emre Sefer:
  NFT Primary Sale Price and Secondary Sale Prediction via Deep Learning. ICAIF 2023: 116-123
• 
  Gorkem Yencak, Emre Sefer:
  SGD with Partial Hessian for Deep Recommendation System Optimization. ICDM (Workshops) 2023: 181-187
• 2022
• 
  Emre Sefer:
  A comparison of topologically associating domain callers over mammals at high resolution. BMC Bioinform. 23(1): 127 (2022)
• 
  Emre Sefer:
  MOCMIN: convex inferring of modular low-rank contact networks over COVID diffusion data. Turkish J. Electr. Eng. Comput. Sci. 30(7): 2568-2585 (2022)
• 
  Emre Sefer:
  BioCode: A Data-Driven Procedure to Learn the Growth of Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 19(6): 3103-3113 (2022)
• 
  Tuna Tuncer, Uygar Kaya, Emre Sefer, Onur Alacam, Tugcan Hoser:
  Asset Price and Direction Prediction via Deep 2D Transformer and Convolutional Neural Networks. ICAIF 2022: 79-86
• 
  Ugur Dolu, Emre Sefer:
  A Novel GBT-Based Approach for Cross-Channel Fraud Detection on Real-World Banking Transactions. AIAI (1) 2022: 73-84
• 2021
• 
  Emre Sefer:
  Hi-C interaction graph analysis reveals the impact of histone modifications in chromatin shape. Appl. Netw. Sci. 6(1): 54 (2021)
• 2020
• 
  Emre Sefer:
  Joint Modeling of Histone Modifications in 3D Genome Shape Through Hi-C Interaction Graph. COMPLEX NETWORKS (2) 2020: 410-421
• 2019
• 
  Emre Sefer, Carl Kingsford:
  Semi-nonparametric modeling of topological domain formation from epigenetic data. Algorithms Mol. Biol. 14(1): 4:1-4:11 (2019)
• 2016
• 
  Emre Sefer, Geet Duggal, Carl Kingsford:
  Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. J. Comput. Biol. 23(6): 425-438 (2016)
• 
  Emre Sefer, Carl Kingsford:
  Diffusion archeology for diffusion progression history reconstruction. Knowl. Inf. Syst. 49(2): 403-427 (2016)
• 
  Emre Sefer, Ziv Bar-Joseph:
  Shall We Dense? Comparing Design Strategies for Time Series Expression Experiments. RECOMB 2016: 244-245
• 2015
• 
  Emre Sefer, Carl Kingsford:
  Convex Risk Minimization to Infer Networks from probabilistic diffusion data at multiple scales. ICDE 2015: 663-674
• 
  Emre Sefer, Geet Duggal, Carl Kingsford:
  Deconvolution of Ensemble Chromatin Interaction Data Reveals the Latent Mixing Structures in Cell Subpopulations. RECOMB 2015: 293-308
• 
  Emre Sefer, Carl Kingsford:
  Semi-nonparametric Modeling of Topological Domain Formation from Epigenetic Data. WABI 2015: 148-161
• 2014
• 
  Emre Sefer, Carl Kingsford:
  Diffusion Archaeology for Diffusion Progression History Reconstruction. ICDM 2014: 530-539
• 2013
• 
  Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford:
  Resolving spatial inconsistencies in chromosome conformation measurements. Algorithms Mol. Biol. 8: 8 (2013)
• 2012
• 
  Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford:
  Parsimonious reconstruction of network evolution. Algorithms Mol. Biol. 7: 25 (2012)
• 
  Rob Patro, Geet Duggal, Emre Sefer, Hao Wang, Darya Filippova, Carl Kingsford:
  The missing models: a data-driven approach for learning how networks grow. KDD 2012: 42-50
• 
  Geet Duggal, Rob Patro, Emre Sefer, Hao Wang, Darya Filippova, Samir Khuller, Carl Kingsford:
  Resolving Spatial Inconsistencies in Chromosome Conformation Data. WABI 2012: 288-300
• 2011
• 
  Emre Sefer, Carl Kingsford:
  Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction. RECOMB 2011: 392-407
• 
  Robert Gove, Nick Gramsky, Rose Kirby, Emre Sefer, Awalin Sopan, Cody Dunne, Ben Shneiderman, Meirav Taieb-Maimon:
  NetVisia: Heat Map & Matrix Visualization of Dynamic Social Network Statistics & Content. SocialCom/PASSAT 2011: 19-26
• 
  Rob Patro, Emre Sefer, Justin Malin, Guillaume Marçais, Saket Navlakha, Carl Kingsford:
  Parsimonious Reconstruction of Network Evolution. WABI 2011: 237-249
• 2009
• 
  Dana S. Nau, Ugur Kuter, Emre Sefer:
  Thinking Ahead in Real-Time Search. ICAPS 2009
• 2005
• 
  Cagil Can Oniz, Sinan Emre Tasçi, Erkay Savas, Özgür Erçetin, Albert Levi:
  SeFER: secure, flexible and efficient routing protocol for distributed sensor networks. EWSN 2005: 246-255

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