• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 57 matches

• 2023
• 
  Brittany Baur, Junha Shin, Jacob Schreiber, Shilu Zhang, Yi Zhang, Mohith Manjunath, Jun S. Song, William Stafford Noble, Sushmita Roy:
  Leveraging epigenomes and three-dimensional genome organization for interpreting regulatory variation. PLoS Comput. Biol. 19(7) (2023)
• 2022
• 
  Tarek Alouane:
  Analyse bioinformatique de l'organisation structurale et fonctionnelle des génomes de deux micro-organismes pathogènes, la bactérie opportuniste Acinetobacter baumannii et le champignon Fusarium graminearum. (Bioinformatics analysis of the structural and functional organization of the genomes of two pathogenic microorganisms, the opportunistic bacterium Acinetobacter baumannii and the fungus Fusarium graminearum). University of Clermont Auvergne, Clermont-Ferrand, France, 2022
• 
  Matej Lexa, Monika Cechova, Son Hoang Nguyen, Pavel Jedlicka, Viktor Tokan, Zdenek Kubat, Roman Hobza, Eduard Kejnovský:
  HiC-TE: a computational pipeline for Hi-C data analysis to study the role of repeat family interactions in the genome 3D organization. Bioinform. 38(16): 4030-4032 (2022)
• 
  Sergey V. Petoukhov:
  The stochastic organization of genomes and the doctrine of energy-information evolution based on bio-antenna arrays. Biosyst. 218: 104712 (2022)
• 
  Anastasiya Belyaeva, Kaie Kubjas, Lawrence J. Sun, Caroline Uhler:
  Identifying 3D Genome Organization in Diploid Organisms via Euclidean Distance Geometry. SIAM J. Math. Data Sci. 4(1): 204-228 (2022)
• 
  Natalia Petukhova, Alexey Zabelkin, Vitaly Dravgelis, Sergey Aganezov, Nikita Alexeev:
  Chromothripsis Rearrangements Are Informed by 3D-Genome Organization. RECOMB-CG 2022: 221-231
• 2021
• 
  Zhaoqian Liu, Jingtong Feng, Bin Yu, Qin Ma, Bingqiang Liu:
  The functional determinants in the organization of bacterial genomes. Briefings Bioinform. 22(3) (2021)
• 
  Xiaolan Chen, Hui Yang, Guifen Liu, Yong Zhang:
  NUCOME: A comprehensive database of nucleosome organization referenced landscapes in mammalian genomes. BMC Bioinform. 22(1): 321 (2021)
• 2020
• 
  Sergey V. Petoukhov:
  Hyperbolic rules of the cooperative organization of eukaryotic and prokaryotic genomes. Biosyst. 198: 104273 (2020)
• 
  Cheng Ye, Alberto Paccanaro, Mark Gerstein, Koon-Kiu Yan:
  The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data. BMC Bioinform. 21(1): 222 (2020)
• 
  Hao Tian, Ying Yang, Sirui Liu, Hui Quan, Yi Qin Gao:
  Toward an understanding of the relation between gene regulation and 3D genome organization. Quant. Biol. 8(4): 295-311 (2020)
• 2019
• 
  Yifeng Qi, Bin Zhang:
  Predicting three-dimensional genome organization with chromatin states. PLoS Comput. Biol. 15(6) (2019)
• 
  Raffaele Giancarlo, Simona E. Rombo, Filippo Utro:
  DNA combinatorial messages and Epigenomics: The case of chromatin organization and nucleosome occupancy in eukaryotic genomes. Theor. Comput. Sci. 792: 117-130 (2019)
• 
  Shuzhen Kuang, Liangjiang Wang:
  Deep Learning of CTCF-Mediated Chromatin Loops in 3D Genome Organization. ICCABS 2019: 77-89
• 
  Yang Yang, Yang Zhang, Bing Ren, Jesse R. Dixon, Jian Ma:
  Comparing 3D Genome Organization in Multiple Species Using Phylo-HMRF. RECOMB 2019: 326-327
• 2018
• 
  Alessandro Giuliani, Masa Tsuchiya, Kenichi Yoshikawa:
  Self-Organization of Genome Expression from Embryo to Terminal Cell Fate: Single-Cell Statistical Mechanics of Biological Regulation. Entropy 20(1): 13 (2018)
• 2017
• 
  Sarvesh Nikumbh, Nico Pfeifer:
  Genetic sequence-based prediction of long-range chromatin interactions suggests a potential role of short tandem repeat sequences in genome organization. BMC Bioinform. 18(1): 218:1-218:16 (2017)
• 
  Gamze Gürsoy, Yun Xu, Jie Liang:
  Spatial organization of the budding yeast genome in the cell nucleus and identification of specific chromatin interactions from multi-chromosome constrained chromatin model. PLoS Comput. Biol. 13(7) (2017)
• 2016
• 
  Filippo Utro, Valeria Di Benedetto, Davide F. V. Corona, Raffaele Giancarlo:
  The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes. Bioinform. 32(6): 835-842 (2016)
• 
  Vijay Ramani, Jay Shendure, Zhi-jun Duan:
  Understanding Spatial Genome Organization: Methods and Insights. Genom. Proteom. Bioinform. 14(1): 7-20 (2016)
• 
  Bingxiang Xu, Zhihua Zhang:
  Computational inference of physical spatial organization of eukaryotic genomes. Quant. Biol. 4(4): 302-309 (2016)
• 2015
• 
  Sertac Eroglu:
  Self-organization of genic and intergenic sequence lengths in genomes: Statistical properties and linguistic coherence. Complex. 21(1): 268-282 (2015)
• 
  James A. Geraets, Eric C. Dykeman, Peter G. Stockley, Neil A. Ranson, Reidun Twarock:
  Asymmetric Genome Organization in an RNA Virus Revealed via Graph-Theoretical Analysis of Tomographic Data. PLoS Comput. Biol. 11(3) (2015)
• 2014
• 
  Jonas Paulsen, Geir Kjetil Sandve, Sveinung Gundersen, Tonje Lien, Kai Trengereid, Eivind Hovig:
  HiBrowse: multi-purpose statistical analysis of genome-wide chromatin 3D organization. Bioinform. 30(11): 1620-1622 (2014)
• 2013
• 
  Patrick Holloway, Krister M. Swenson, David H. Ardell, Nadia El-Mabrouk:
  Ancestral Genome Organization: An Alignment Approach. J. Comput. Biol. 20(4): 280-295 (2013)
• 
  Jesse D. Ziebarth, Anindya Bhattacharya, Yan Cui:
  CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization. Nucleic Acids Res. 41(Database-Issue): 188-194 (2013)
• 
  Layla Oesper, Benjamin J. Raphael:
  Workshop: Reconstructing the organization of cancer genomes. ICCABS 2013: 1
• 2012
• 
  Jishnu Das, Jaaved Mohammed, Haiyuan Yu:
  Genome-scale analysis of interaction dynamics reveals organization of biological networks. Bioinform. 28(14): 1873-1878 (2012)
• 
  Huan Huang, Shuangxin Yu, Hongde Liu, Xiao Sun:
  Nucleosome organization in sequences of alternative events in human genome. Biosyst. 109(2): 214-219 (2012)
• 
  Yanglan Gan, Jihong Guan, Shuigeng Zhou, Weixiong Zhang:
  Structural features based genome-wide characterization and prediction of nucleosome organization. BMC Bioinform. 13: 49 (2012)

skipping 27 more matches