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Publication search results
found 90 matches
- 2024
- C. Allaire, R. Ammendola, E.-C. Aschenauer, M. Balandat, Marco Battaglieri, J. C. Bernauer, M. Bondì, N. Branson, T. Britton, Anja Butter, I. Chahrour, P. Chatagnon, Evaristo Cisbani, E. W. Cline, S. Dash, C. T. Dean, W. Deconinck, A. Deshpande, Markus Diefenthaler, R. Ent, Cristiano Fanelli, M. Finger, E. Fol, S. Furletov, Y. Gao, James Giroux, N. C. Gunawardhana Waduge, O. Hassan, P. L. Hegde, Roger José Hernández-Pinto, Astrid N. Hiller Blin, Tanja Horn, J. Huang, A. Jalotra, D. Jayakodige, B. Joo, M. Junaid, N. Kalantarians, Piyush Karande, B. Kriesten, R. Kunnawalkam Elayavalli, Y. Li, M. Lin, Frank Liu, S. Liuti, G. Matousek, Matthew McEneaney, Diana McSpadden, T. Menzo, T. Miceli, Vinicius Mikuni, R. Montgomery, Benjamin Nachman, R. R. Nair, J. Niestroy, S. A. Ochoa Oregon, J. Oleniacz, J. D. Osborn, C. Paudel, C. Pecar, C. Peng, Gabriel N. Perdue, W. Phelps, Martin L. Purschke, H. Rajendran, K. Rajput, Y. Ren, David Francisco Rentería-Estrada, D. Richford, B. J. Roy, D. Roy, A. Saini, Nobuo Sato, T. Satogata, German Sborlini, Malachi Schram, David Shih, J. Singh, R. Singh, Andrzej Siódmok, J. Stevens, P. Stone, L. Suarez, K. Suresh, Abdel Nasser Tawfik, Fernando Torales Acosta, N. Tran, R. Trotta, F. J. Twagirayezu, R. Tyson, S. Volkova, Anselm Vossen, Eric Walter, Daniel Whiteson, Michael Williams, S. Wu, N. Zachariou, P. Zurita:
Artificial Intelligence for the Electron Ion Collider (AI4EIC). Comput. Softw. Big Sci. 8(1): 5 (2024) - Lois Curfman McInnes, Michael A. Heroux, David E. Bernholdt, Anshu Dubey, Elsa Gonsiorowski, Rinku Gupta, Osni Marques, J. David Moulton, Hai Ah Nam, Boyana Norris, Elaine M. Raybourn, James M. Willenbring, Ann S. Almgren, Roscoe A. Bartlett, Kita Cranfill, Stephen Fickas, Don Frederick, William F. Godoy, Patricia A. Grubel, Rebecca Hartman-Baker, Axel Huebl, Rose Lynch, Addi Malviya-Thakur, Reed Milewicz, Mark C. Miller, Miranda Mundt, Erik Palmer, Suzanne Parete-Koon, Megan Phinney, Katherine Riley, David M. Rogers, Benjamin H. Sims, Deborah Stevens, Gregory R. Watson:
A Cast of Thousands: How the IDEAS Productivity Project Has Advanced Software Productivity and Sustainability. Comput. Sci. Eng. 26(1): 48-60 (2024) - Jason Y. Wang, Jason M. Stevens, Stavros K. Kariofillis, Mai-Jan Tom, Dung L. Golden, Jun Li, Jose E. Tabora, Marvin Parasram, Benjamin J. Shields, David N. Primer, Bo Hao, David del Valle, Stacey DiSomma, Ariel Furman, G. Greg Zipp, Sergey Melnikov, James Paulson, Abigail G. Doyle:
Identifying general reaction conditions by bandit optimization. Nat. 626(8001): 1025-1033 (2024) - Cristiano Fanelli, James Giroux, Justin Stevens:
Deep(er) Reconstruction of Imaging Cherenkov Detectors with Swin Transformers and Normalizing Flow Models. CoRR abs/2407.07376 (2024) - Prapti Trivedi, Aditya Gulati, Oliver Molenschot, Meghana Arakkal Rajeev, Rajkumar Ramamurthy, Keith Stevens, Tanveesh Singh Chaudhery, Jahnavi Jambholkar, James Zou, Nazneen Rajani:
Self-rationalization improves LLM as a fine-grained judge. CoRR abs/2410.05495 (2024) - 2023
- Maxim Zvyagin, Alexander Brace, Kyle Hippe, Yuntian Deng, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, Defne G. Ozgulbas, Natalia Vassilieva, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Sam Foreman, Zhen Xie, Diangen Lin, Maulik Shukla, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Ian T. Foster, James J. Davis, Michael E. Papka, Thomas S. Brettin, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, Arvind Ramanathan:
GenSLMs: Genome-scale language models reveal SARS-CoV-2 evolutionary dynamics. Int. J. High Perform. Comput. Appl. 37(6): 683-705 (2023) - Benjamin Lieberman, Jude Dzevela Kong, Roy Gusinow, Ali Asgary, Nicola Luigi Bragazzi, Joshua Choma, Salah-Eddine Dahbi, Kentaro Hayashi, Deepak Kar, Mary Kawonga, Mduduzi Mbada, Kgomotso Monnakgotla, James Orbinski, Xifeng Ruan, Finn Stevenson, Jianhong Wu, Bruce Mellado:
Big data- and artificial intelligence-based hot-spot analysis of COVID-19: Gauteng, South Africa, as a case study. BMC Medical Informatics Decis. Mak. 23(1): 19 (2023) - Robert D. Olson, Rida Assaf, Thomas S. Brettin, Neal Conrad, Clark Cucinell, James J. Davis, Donald M. Dempsey, Allan Dickerman, Emily M. Dietrich, Ronald W. Kenyon, Mehmet Kuscuoglu, Elliot J. Lefkowitz, Jian Lu, Dustin Machi, Catherine Macken, Chunhong Mao, Anna Maria Niewiadomska, Marcus Nguyen, Gary J. Olsen, Jamie C. Overbeek, Bruce D. Parrello, Victoria Parrello, Jacob s Porter, Gordon D. Pusch, Maulik Shukla, Indresh Singh, Lucy Stewart, Gene Tan, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Zachary S. Wallace, Andrew S. Warren, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo, Yun Zhang, Christian M. Zmasek, Richard H. Scheuermann, Rick L. Stevens:
Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR. Nucleic Acids Res. 51(D1): 678-689 (2023) - Andrea I. Luppi, Joana Cabral, Rodrigo Cofré, Pedro A. M. Mediano, Fernando E. Rosas, Abid Y. Qureshi, Amy Kuceyeski, Enzo Tagliazucchi, Federico Raimondo, Gustavo Deco, James M. Shine, Morten L. Kringelbach, Patricio Orio, ShiNung Ching, Yonatan Sanz Perl, Michael N. Diringer, Robert D. Stevens, Jacobo Diego Sitt:
Computational modelling in disorders of consciousness: Closing the gap towards personalised models for restoring consciousness. NeuroImage 275: 120162 (2023) - Megan M. Sperry, Tomiko Oskotsky, Ivana Maric, Shruti Kaushal, Takako Takeda, Viktor Horvath, Rani K. Powers, Melissa Rodas, Brooke Furlong, Mercy Soong, Pranav Prabhala, Girija Goyal, Kenneth E. Carlson, Ronald J. Wong, Idit Kosti, Brian L. Le, James Logue, Holly Hammond, Matthew Frieman, David K. Stevenson, Donald E. Ingber, Marina Sirota, Richard Novák:
Target-agnostic drug prediction integrated with medical record analysis uncovers differential associations of statins with increased survival in COVID-19 patients. PLoS Comput. Biol. 19(5) (2023) - Samuel Cahyawijaya, Holy Lovenia, Alham Fikri Aji, Genta Indra Winata, Bryan Wilie, Fajri Koto, Rahmad Mahendra, Christian Wibisono, Ade Romadhony, Karissa Vincentio, Jennifer Santoso, David Moeljadi, Cahya Wirawan, Frederikus Hudi, Muhammad Satrio Wicaksono, Ivan Halim Parmonangan, Ika Alfina, Ilham Firdausi Putra, Samsul Rahmadani, Yulianti Oenang, Ali Akbar Septiandri, James Jaya, Kaustubh D. Dhole, Arie Ardiyanti Suryani, Rifki Afina Putri, Dan Su, Keith Stevens, Made Nindyatama Nityasya, Muhammad Farid Adilazuarda, Ryan Hadiwijaya, Ryandito Diandaru, Tiezheng Yu, Vito Ghifari, Wenliang Dai, Yan Xu, Dyah Damapuspita, Haryo Akbarianto Wibowo, Cuk Tho, Ichwanul Muslim Karo Karo, Tirana Fatyanosa, Ziwei Ji, Graham Neubig, Timothy Baldwin, Sebastian Ruder, Pascale Fung, Herry Sujaini, Sakriani Sakti, Ayu Purwarianti:
NusaCrowd: Open Source Initiative for Indonesian NLP Resources. ACL (Findings) 2023: 13745-13818 - C. Allaire, R. Ammendola, E.-C. Aschenauer, M. Balandat, Marco Battaglieri, J. C. Bernauer, M. Bondì, N. Branson, Thomas Britton, Anja Butter, I. Chahrour, P. Chatagnon, Evaristo Cisbani, E. W. Cline, S. Dash, C. T. Dean, W. Deconinck, A. Deshpande, Markus Diefenthaler, R. Ent, Cristiano Fanelli, M. Finger, M. Finger Jr., E. Fol, S. Furletov, Yuan Gao, James Giroux, N. C. Gunawardhana Waduge, R. Harish, O. Hassan, P. L. Hegde, Roger José Hernández-Pinto, Astrid N. Hiller Blin, Tanja Horn, J. Huang, D. Jayakodige, B. Joo, M. Junaid, Piyush Karande, B. Kriesten, R. Kunnawalkam Elayavalli, M. Lin, Frank Liu, S. Liuti, G. Matousek, Matthew McEneaney, Diana McSpadden, T. Menzo, T. Miceli, Vinicius Mikuni, R. Montgomery, Benjamin Nachman, R. R. Nair, J. Niestroy, S. A. Ochoa Oregon, J. Oleniacz, J. D. Osborn, C. Paudel, C. Pecar, C. Peng, Gabriel N. Perdue, W. Phelps, Martin L. Purschke, K. Rajput, Y. Ren, David Francisco Rentería-Estrada, D. Richford, B. J. Roy, D. Roy, Nobuo Sato, T. Satogata, German Sborlini, Malachi Schram, David Shih, J. Singh, R. Singh, Andrzej Siódmok, P. Stone, J. Stevens, L. Suarez, K. Suresh, Abdel Nasser Tawfik, Fernando Torales Acosta, N. Tran, R. Trotta, F. J. Twagirayezu, R. Tyson, S. Volkova, Anselm Vossen, Eric Walter, Daniel Whiteson, Michael Williams, S. Wu, N. Zachariou, P. Zurita:
Artificial Intelligence for the Electron Ion Collider (AI4EIC). CoRR abs/2307.08593 (2023) - Shuaiwen Leon Song, Bonnie Kruft, Minjia Zhang, Conglong Li, Shiyang Chen, Chengming Zhang, Masahiro Tanaka, Xiaoxia Wu, Jeff Rasley, Ammar Ahmad Awan, Connor Holmes, Martin Cai, Adam Ghanem, Zhongzhu Zhou, Yuxiong He, Pete Luferenko, Divya Kumar, Jonathan A. Weyn, Ruixiong Zhang, Sylwester Klocek, Volodymyr Vragov, Mohammed AlQuraishi, Gustaf Ahdritz, Christina Floristean, Cristina Negri, Rao Kotamarthi, Venkatram Vishwanath, Arvind Ramanathan, Sam Foreman, Kyle Hippe, Troy Arcomano, Romit Maulik, Maxim Zvyagin, Alexander Brace, Bin Zhang, Cindy Orozco Bohorquez, Austin Clyde, Bharat Kale, Danilo Perez-Rivera, Heng Ma, Carla M. Mann, Michael W. Irvin, J. Gregory Pauloski, Logan T. Ward, Valérie Hayot-Sasson, Murali Emani, Zhen Xie, Diangen Lin, Maulik Shukla, Ian T. Foster, James J. Davis, Michael E. Papka, Thomas S. Brettin, Prasanna Balaprakash, Gina Tourassi, John Gounley, Heidi A. Hanson, Thomas E. Potok, Massimiliano Lupo Pasini, Kate Evans, Dan Lu, Dalton D. Lunga, Junqi Yin, Sajal Dash, Feiyi Wang, Mallikarjun Shankar, Isaac Lyngaas, Xiao Wang, Guojing Cong, Pei Zhang, Ming Fan, Siyan Liu, Adolfy Hoisie, Shinjae Yoo, Yihui Ren, William Tang, Kyle Felker, Alexey Svyatkovskiy, Hang Liu, Ashwin M. Aji, Angela Dalton, Michael J. Schulte, Karl Schulz, Yuntian Deng, Weili Nie, Josh Romero, Christian Dallago, Arash Vahdat, Chaowei Xiao, Thomas Gibbs, Anima Anandkumar, Rick Stevens:
DeepSpeed4Science Initiative: Enabling Large-Scale Scientific Discovery through Sophisticated AI System Technologies. CoRR abs/2310.04610 (2023) - Lois Curfman McInnes, Michael A. Heroux, David E. Bernholdt, Anshu Dubey, Elsa Gonsiorowski, Rinku Gupta, Osni Marques, J. David Moulton, Hai Ah Nam, Boyana Norris, Elaine M. Raybourn, James M. Willenbring, Ann S. Almgren, Ross Bartlett, Kita Cranfill, Stephen Fickas, Don Frederick, William F. Godoy, Patricia Grubel, Rebecca Hartman-Baker, Axel Huebl, Rose Lynch, Addi Malviya-Thakur, Reed Milewicz, Mark C. Miller, Miranda Mundt, Erik Palmer, Suzanne Parete-Koon, Megan Phinney, Katherine Riley, David M. Rogers, Benjamin H. Sims, Deborah Stevens, Gregory R. Watson:
A cast of thousands: How the IDEAS Productivity project has advanced software productivity and sustainability. CoRR abs/2311.02010 (2023) - 2022
- Fangfang Xia, Jonathan E. Allen, Prasanna Balaprakash, Thomas S. Brettin, Cristina Garcia-Cardona, Austin Clyde, Judith D. Cohn, James H. Doroshow, Xiaotian Duan, Veronika Dubinkina, Yvonne A. Evrard, Ya Ju Fan, Jason Gans, Stewart He, Pinyi Lu, Sergei Maslov, Alexander Partin, Maulik Shukla, Eric A. Stahlberg, Justin M. Wozniak, Hyun Seung Yoo, George F. Zaki, Yitan Zhu, Rick Stevens:
A cross-study analysis of drug response prediction in cancer cell lines. Briefings Bioinform. 23(1) (2022) - Anda Trifan, Defne Gorgun, Michael Salim, Zongyi Li, Alexander Brace, Maxim Zvyagin, Heng Ma, Austin Clyde, David Clark, David J. Hardy, Tom Burnley, Lei Huang, John D. McCalpin, Murali Emani, Hyenseung Yoo, Junqi Yin, Aristeidis Tsaris, Vishal Subbiah, Tanveer Raza, Jessica Liu, Noah Trebesch, Geoffrey Wells, Venkatesh Mysore, Tom Gibbs, James C. Phillips, S. Chakra Chennubhotla, Ian T. Foster, Rick Stevens, Anima Anandkumar, Venkatram Vishwanath, John E. Stone, Emad Tajkhorshid, Sarah A. Harris, Arvind Ramanathan:
Intelligent resolution: Integrating Cryo-EM with AI-driven multi-resolution simulations to observe the severe acute respiratory syndrome coronavirus-2 replication-transcription machinery in action. Int. J. High Perform. Comput. Appl. 36(5-6): 603-623 (2022) - Ken Wiley, Laura Findley, Madison Goldrich, Tejinder K. Rakhra-Burris, Ana Stevens, Pamela Williams, Carol J. Bult, Rex L. Chisholm, Patricia Deverka, Geoffrey S. Ginsburg, Eric D. Green, Gail P. Jarvik, George A. Mensah, Erin Ramos, Mary V. Relling, Dan M. Roden, Robb Rowley, Gil Alterovitz, Samuel J. Aronson, Lisa Bastarache, James J. Cimino, Erin L. Crowgey, Guilherme Del Fiol, Robert R. Freimuth, Mark A. Hoffman, Janina M. Jeff, Kevin B. Johnson, Kensaku Kawamoto, Subha Madhavan, Eneida A. Mendonça, Lucila Ohno-Machado, Siddharth Pratap, Casey Overby Taylor, Marylyn D. Ritchie, Nephi Walton, Chunhua Weng, Teresa Zayas-Cabán, Teri A. Manolio, Marc S. Williams:
A research agenda to support the development and implementation of genomics-based clinical informatics tools and resources. J. Am. Medical Informatics Assoc. 29(8): 1342-1349 (2022) - Yulun Wu, Nicholas Choma, Andrew Deru Chen, Mikaela Cashman, Érica Teixeira Prates, Verónica G. Melesse Vergara, Manesh Shah, Austin Clyde, Thomas S. Brettin, Wibe Albert de Jong, Neeraj Kumar, Martha S. Head, Rick L. Stevens, Peter Nugent, Daniel A. Jacobson, James B. Brown:
Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery. ICLR 2022 - Samuel Cahyawijaya, Holy Lovenia, Alham Fikri Aji, Genta Indra Winata, Bryan Wilie, Rahmad Mahendra, Christian Wibisono, Ade Romadhony, Karissa Vincentio, Fajri Koto, Jennifer Santoso, David Moeljadi, Cahya Wirawan, Frederikus Hudi, Ivan Halim Parmonangan, Ika Alfina, Muhammad Satrio Wicaksono, Ilham Firdausi Putra, Samsul Rahmadani, Yulianti Oenang, Ali Akbar Septiandri, James Jaya, Kaustubh D. Dhole, Arie Ardiyanti Suryani, Rifki Afina Putri, Dan Su, Keith Stevens, Made Nindyatama Nityasya, Muhammad Farid Adilazuarda, Ryan Ignatius, Ryandito Diandaru, Tiezheng Yu, Vito Ghifari, Wenliang Dai, Yan Xu, Dyah Damapuspita, Cuk Tho, Ichwanul Muslim Karo Karo, Tirana Noor Fatyanosa, Ziwei Ji, Pascale Fung, Graham Neubig, Timothy Baldwin, Sebastian Ruder, Herry Sujaini, Sakriani Sakti, Ayu Purwarianti:
NusaCrowd: Open Source Initiative for Indonesian NLP Resources. CoRR abs/2212.09648 (2022) - 2021
- Margo VanOeffelen, Marcus Nguyen, Derya Aytan-Aktug, Thomas S. Brettin, Emily M. Dietrich, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Robert Olson, Gordon D. Pusch, Maulik Shukla, Rick Stevens, Veronika Vonstein, Andrew S. Warren, Alice R. Wattam, Hyun Seung Yoo, James J. Davis:
A genomic data resource for predicting antimicrobial resistance from laboratory-derived antimicrobial susceptibility phenotypes. Briefings Bioinform. 22(6) (2021) - Ayse S. Cakmak, Erick Andres Perez-Alday, Giulia Da Poian, Ali Bahrami Rad, Thomas J. Metzler, Thomas Neylan, Stacey L. House, Francesca L. Beaudoin, Xinming An, Jennifer S. Stevens, Donglin Zeng, Sarah D. Linnstaedt, Tanja Jovanovic, Laura T. Germine, Kenneth A. Bollen, Scott L. Rauch, Christopher A. Lewandowski, Phyllis L. Hendry, Sophia Sheikh, Alan B. Storrow, Paul I. Musey, John P. Haran, Christopher W. Jones, Brittany E. Punches, Robert A. Swor, Nina T. Gentile, Meghan McGrath, Mark J. Seamon, Kamran Mohiuddin, Anna M. Chang, Claire Pearson, Robert M. Domeier, Steven E. Bruce, Brian J. O'Neil, Niels K. Rathlev, Leon D. Sanchez, Robert H. Pietrzak, Jutta Joormann, Deanna M. Barch, Diego A. Pizzagalli, Steven E. Harte, James M. Elliott, Ronald C. Kessler, Karestan C. Koenen, Kerry J. Ressler, Samuel A. McLean, Qiao Li, Gari D. Clifford:
Classification and Prediction of Post-Trauma Outcomes Related to PTSD Using Circadian Rhythm Changes Measured via Wrist-Worn Research Watch in a Large Longitudinal Cohort. IEEE J. Biomed. Health Informatics 25(8): 2866-2876 (2021) - Yulun Wu, Nicholas Choma, Andrew Deru Chen, Mikaela Cashman, Érica T. Prates, Manesh Shah, Verónica G. Melesse Vergara, Austin Clyde, Thomas S. Brettin, Wibe A. de Jong, Neeraj Kumar, Martha S. Head, Rick L. Stevens, Peter Nugent, Daniel A. Jacobson, James B. Brown:
Spatial Graph Attention and Curiosity-driven Policy for Antiviral Drug Discovery. CoRR abs/2106.02190 (2021) - Luca Pion-Tonachini, Kristofer E. Bouchard, Héctor García Martín, Sean Peisert, W. Bradley Holtz, Anil Aswani, Dipankar Dwivedi, Haruko M. Wainwright, Ghanshyam Pilania, Benjamin Nachman, Babetta L. Marrone, Nicola Falco, Prabhat, Daniel B. Arnold, Alejandro Wolf-Yadlin, Sarah Powers, Sharlee Climer, Quinn Jackson, Ty Carlson, Michael Sohn, Petrus H. Zwart, Neeraj Kumar, Amy Justice, Claire J. Tomlin, Daniel A. Jacobson, Gos Micklem, Georgios V. Gkoutos, Peter J. Bickel, Jean-Baptiste Cazier, Juliane Müller, Bobbie-Jo Webb-Robertson, Rick Stevens, Mark Anderson, Kenneth Kreutz-Delgado, Michael W. Mahoney, James B. Brown:
Learning from learning machines: a new generation of AI technology to meet the needs of science. CoRR abs/2111.13786 (2021) - 2020
- Stuart Mumford, Nabil Freij, Steven Christe, Jack Ireland, Florian Mayer, V. Keith Hughitt, Albert J. Shih, Daniel Ryan, Simon Liedtke, David Pérez-Suárez, Pritish Chakraborty, Vishnunarayan K, Andrew Inglis, Punyaslok Pattnaik, Brigitta M. Sipocz, Rishabh Sharma, Andrew Leonard, David Stansby, Russell J. Hewett, Alex Hamilton, Laura Hayes, Asish Panda, Matt Earnshaw, Nitin Choudhary, Ankit Kumar, Prateek Chanda, Md. Akramul Haque, Michael Kirk, Michael Mueller, Sudarshan Konge, Rajul Srivastava, Yash Jain, Samuel Bennett, Ankit Baruah, Will T. Barnes, Michael Charlton, Shane A. Maloney, Nicky Chorley, Himanshu, Sanskar Modi, James Mason, Jose Rozo, Larry Manley, Agneet Chatterjee, John Evans, Michael Malocha, Monica G. Bobra, Sourav Ghosh, Dominik Stanczak, Ruben De Visscher, Shresth Verma, Ankit Agrawal, Dumindu Buddhika, Swapnil Sharma, Jongyeob Park, Matt Bates, Dhruv Goel, Garrison Taylor, Goran Cetusic, Jacob, Mateo Inchaurrandieta, Sally Dacie, Sanjeev Dubey, Deepankar Sharma, Erik Bray, Jai Rideout, Serge Zahniy, Tomas Meszaros, Abhigyan Bose, André Chicrala, Ankit, Chloé Guennou, Daniel D'avella, Daniel Williams, Jordan Ballew, Nick Murphy, Priyank Lodha, Thomas Robitaille, Yash Krishan, Andrew Hill, Arthur Eigenbrot, Benjamin Mampaey, Bernhard Wiedemann, Carlos Molina, Duygu Keskek, Ishtyaq Habib, Joseph Letts, Juanjo Bazán, Quinn Arbolante, Reid Gomillion, Yash Kothari, Yash Sharma, Abigail Stevens, Adrian M. Price-Whelan, Ambar Mehrotra, Arseniy Kustov, Brandon Stone, Trung Dang, Emmanuel Arias, Fionnlagh Dover, Freek Verstringe, Gulshan Kumar, Harsh Mathur, Igor Babuschkin, Jaylen Wimbish, Juan Buitrago-Casas, Kalpesh Krishna, Kaustubh Hiware, Manas Mangaonkar, Matthew Mendero, Mickaël Schoentgen, Norbert Gyenge, Ole Streicher, Rajasekhar Mekala, Rishabh Mishra, Shashank Srikanth, Sarthak Jain, Tannmay Yadav, Tessa Wilkinson, Tiago Pereira, Yudhik Agrawal, Jamescalixto, Yasintoda, Sophie Murray:
SunPy: A Python package for Solar Physics. J. Open Source Softw. 5(46): 1832 (2020) - James J. Davis, Alice R. Wattam, Ramy K. Aziz, Thomas S. Brettin, Ralph Butler, Rory Butler, Philippe Chlenski, Neal Conrad, Allan Dickerman, Emily M. Dietrich, Joseph L. Gabbard, Svetlana Gerdes, Andrew Guard, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Marcus Nguyen, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Jamie C. Overbeek, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, Maulik Shukla, Chris Thomas, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Fangfang Xia, Dawen Xie, Hyun Seung Yoo, Rick Stevens:
The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities. Nucleic Acids Res. 48(Database-Issue): D606-D612 (2020) - Ryan L. Collins, Harrison Brand, Konrad J. Karczewski, Xuefang Zhao, Jessica Alföldi, Laurent C. Francioli, Amit V. Khera, Chelsea Lowther, Laura D. Gauthier, Harold Wang, Nicholas A. Watts, Matthew Solomonson, Alexander Baumann, Ruchi Munshi, Mark Walker, Christopher W. Whelan, Yongqing Huang, Ted Brookings, Ted Sharpe, Matthew R. Stone, Elise Valkanas, Jack Fu, Grace Tiao, Kristen M. Laricchia, Valentín Ruano-Rubio, Christine Stevens, Namrata Gupta, Caroline Cusick, Lauren Margolin, Irina M. Armean, Eric Banks, Louis Bergelson, Kristian Cibulskis, Kristen M. Connolly, Miguel Covarrubias, Beryl B. Cummings, Mark J. Daly, Stacey Donnelly, Yossi Farjoun, Steven Ferriera, Stacey Gabriel, Jeff Gentry, Thibault Jeandet, Diane Kaplan, Christopher Llanwarne, Eric V. Minikel, Benjamin M. Neale, Sam Novod, Anne H. O'Donnell-Luria, Nikelle Petrillo, Timothy Poterba, David Roazen, Andrea Saltzman, Kaitlin E. Samocha, Molly Schleicher, Cotton Seed, José Soto, Kathleen Tibbetts, Charlotte Tolonen, Christopher Vittal, Gordon Wade, Arcturus Wang, Qingbo Wang, James S. Ware, Ben Weisburd, Nicola Whiffin, Carlos A. Aguilar Salinas, Tariq Ahmad, Christine M. Albert, Diego Ardissino, Gil Atzmon, John Barnard, Laurent Beaugerie, Emelia J. Benjamin, Michael Boehnke, Lori L. Bonnycastle, Erwin P. Bottinger, Donald W. Bowden, Matthew J. Bown, John C. Chambers, Juliana C. Chan, Daniel Chasman, Judy Cho, Mina K. Chung, Bruce Cohen, Adolfo Correa, Dana Dabelea, Dawood Darbar, Ravindranath Duggirala, Josée Dupuis, Patrick T. Ellinor, Roberto Elosua, Jeanette Erdmann, Tõnu Esko, Martti Färkkilä, Jose Florez, Andre Franke, Gad Getz, Benjamin Glaser, Stephen J. Glatt, David Goldstein, Clicerio Gonzalez, Leif Groop, Christopher A. Haiman, Craig Hanis, Matthew Harms, Mikko Hiltunen, Matti M. Holi, Christina M. Hultman, Mikko Kallela, Jaakko Kaprio, Sekar Kathiresan, Bong-Jo Kim, Young Jin Kim, George Kirov, Jaspal Kooner, Seppo Koskinen, Harlan M. Krumholz, Subra Kugathasan, Soo Heon Kwak, Markku Laakso, Terho Lehtimäki, Ruth J. F. Loos, Steven A. Lubitz, Ronald C. W. Ma, Daniel G. MacArthur, Jaume Marrugat, Kari M. Mattila, Steven A. McCarroll, Mark I. McCarthy, Dermot McGovern, Ruth McPherson, James B. Meigs, Olle Melander, Andres Metspalu, Peter M. Nilsson, Michael C. O'Donovan, Dost Öngür, Lorena Orozco, Michael J. Owen, Colin N. A. Palmer, Aarno Palotie, Kyong Soo Park, Carlos Pato, Ann E. Pulver, Nazneen Rahman, Anne M. Remes, John D. Rioux, Samuli Ripatti, Dan M. Roden, Danish Saleheen, Veikko Salomaa, Nilesh J. Samani, Jeremiah Scharf, Heribert Schunkert, Moore B. Shoemaker, Pamela Sklar, Hilkka Soininen, Harry Sokol, Tim Spector, Patrick F. Sullivan, Jaana Suvisaari, E. Shyong Tai, Yik Ying Teo, Tuomi Tiinamaija, Ming Tsuang, Dan Turner, Teresa Tusie-Luna, Erkki Vartiainen, Hugh Watkins, Rinse K. Weersma, Maija Wessman, James G. Wilson, Ramnik J. Xavier, Kent D. Taylor, Henry J. Lin, Stephen S. Rich, Wendy S. Post, Yii-Der Ida Chen, Jerome I. Rotter, Chad Nusbaum, Anthony A. Philippakis, Eric S. Lander, Michael E. Talkowski:
A structural variation reference for medical and population genetics. Nat. 581(7809): 444-451 (2020) - Joshua Gertler, Stephanie Novotny, Andrew Poppe, Yu Sun Chung, James J. Gross, Godfrey D. Pearlson, Michael C. Stevens:
Neural correlates of non-specific skin conductance responses during resting state fMRI. NeuroImage 214: 116721 (2020) - Rock Stevens, Josiah Dykstra, Wendy Knox Everette, James Chapman, Garrett Bladow, Alexander Farmer, Kevin Halliday, Michelle L. Mazurek:
Compliance Cautions: Investigating Security Issues Associated with U.S. Digital-Security Standards. NDSS 2020 - 2019
- Dionysios A. Antonopoulos, Rida Assaf, Ramy Karam Aziz, Thomas S. Brettin, Christopher Bun, Neal Conrad, James J. Davis, Emily M. Dietrich, Terry Disz, Svetlana Gerdes, Ronald W. Kenyon, Dustin Machi, Chunhong Mao, Daniel E. Murphy-Olson, Eric K. Nordberg, Gary J. Olsen, Robert Olson, Ross A. Overbeek, Bruce D. Parrello, Gordon D. Pusch, John Santerre, Maulik Shukla, Rick L. Stevens, Margo VanOeffelen, Veronika Vonstein, Andrew S. Warren, Alice R. Wattam, Fangfang Xia, Hyun Seung Yoo:
PATRIC as a unique resource for studying antimicrobial resistance. Briefings Bioinform. 20(4): 1094-1102 (2019) - 2018
- Fangfang Xia, Maulik Shukla, Thomas S. Brettin, Cristina Garcia-Cardona, Judith D. Cohn, Jonathan E. Allen, Sergei Maslov, Susan L. Holbeck, James H. Doroshow, Yvonne A. Evrard, Eric A. Stahlberg, Rick L. Stevens:
Predicting tumor cell line response to drug pairs with deep learning. BMC Bioinform. 19-S(18): 71-79 (2018)
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