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- Jeff Lichtman
aka: Jeff W. Lichtman, Jeff William Lichtman
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Publication search results
found 72 matches
- 2024
- Jiahao Shi
, Hongyu Ge, Shuohong Wang
, Donglai Wei, Jiancheng Yang, Ao Cheng, Richard Schalek, Jun Guo, Jeff Lichtman, Lirong Wang, Ruobing Zhang
:
Two-stage error detection to improve electron microscopy image mosaicking. Comput. Biol. Medicine 178: 108456 (2024) - Jakob Troidl, Simon Warchol
, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang, Brock A. Wester, Donglai Wei, Jeff W. Lichtman, Hanspeter Pfister
, Johanna Beyer
:
- Visual Analysis of Neuronal Connectivity Motifs. IEEE Trans. Vis. Comput. Graph. 30(1): 748-758 (2024) - Jia Wan, Wanhua Li, Atmadeep Banerjee, Jason Ken Adhinarta, Evelina Sjostedt, Jingpeng Wu, Jeff Lichtman, Hanspeter Pfister, Donglai Wei:
TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images. CoRR abs/2401.13961 (2024) - Shixuan Gu, Jason Ken Adhinarta, Mikhail Bessmeltsev, Jiancheng Yang, Jessica Zhang, Daniel R. Berger, Jeff W. Lichtman, Hanspeter Pfister, Donglai Wei:
FreSeg: Frenet-Frame-based Part Segmentation for 3D Curvilinear Structures. CoRR abs/2404.14435 (2024) - 2023
- Minghao Chen, Mukesh Bangalore Renuka, Lu Mi, Jeff Lichtman, Nir Shavit, Yaron Meirovitch:
Learning to Correct Sloppy Annotations in Electron Microscopy Volumes. CVPR Workshops 2023: 4273-4284 - Yulun Zhang, Donglai Wei, Richard Schalek, Yuelong Wu, Stephen G. Turney, Jeff Lichtman, Hanspeter Pfister, Yun Fu:
High-Throughput Microscopy Image Deblurring with Graph Reasoning Attention Network. ISBI 2023: 1-5 - 2022
- Morgan Sanchez
, Dymon Moore, Erik C. Johnson, Brock A. Wester, Jeff W. Lichtman, William R. Gray Roncal:
Connectomics Annotation Metadata Standardization for Increased Accessibility and Queryability. Frontiers Neuroinformatics 16: 828458 (2022) - Brian Matejek
, Tim Franzmeyer, Donglai Wei, Xueying Wang
, Jinglin Zhao, Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister
:
Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes. IEEE Trans. Medical Imaging 41(9): 2360-2370 (2022) - 2021
- Felix Gonda
, Xueying Wang
, Johanna Beyer
, Markus Hadwiger
, Jeff W. Lichtman, Hanspeter Pfister
:
VICE: Visual Identification and Correction of Neural Circuit Errors. Comput. Graph. Forum 40(3): 447-458 (2021) - Susie Yi Huang, Thomas Witzel, Boris Keil
, Alina Scholz, Mathias Davids, Peter Dietz, Elmar Rummert, Rebecca Ramb, John E. Kirsch, Anastasia Yendiki
, Qiuyun Fan, Qiyuan Tian, Gabriel Ramos-Llordén, Hong-Hsi Lee, Aapo Nummenmaa, Berkin Bilgic
, Kawin Setsompop, Fuyixue Wang
, Alexandru Vlad Avram
, Michal E. Komlosh, Dan Benjamini
, Kulam Najmudeen Magdoom, Sudhir K. Pathak, Walter Schneider, Dmitry S. Novikov, Els Fieremans, Slimane Tounekti
, Choukri Mekkaoui, Jean Augustinack, Daniel R. Berger, Alexander Shapson-Coe, Jeff Lichtman, Peter J. Basser, Lawrence L. Wald, Bruce R. Rosen:
Connectome 2.0: Developing the next-generation ultra-high gradient strength human MRI scanner for bridging studies of the micro-, meso- and macro-connectome. NeuroImage 243: 118530 (2021) - Zudi Lin
, Donglai Wei, Mariela D. Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K, Silin Zou, Nils Wendt, Jonathan Boulanger-Weill
, Xueying Wang
, Nagaraju Dhanyasi, Ignacio Arganda-Carreras
, Florian Engert, Jeff Lichtman, Hanspeter Pfister
:
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale. MICCAI (1) 2021: 164-174 - Donglai Wei, Kisuk Lee, Hanyu Li
, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin
, Thomas D. Uram, Xueying Wang
, Ignacio Arganda-Carreras
, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
:
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. MICCAI (1) 2021: 175-185 - Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit:
Learning Guided Electron Microscopy with Active Acquisition. CoRR abs/2101.02746 (2021) - Felix Gonda, Xueying Wang, Johanna Beyer, Markus Hadwiger
, Jeff W. Lichtman, Hanspeter Pfister:
VICE: Visual Identification and Correction of Neural Circuit Errors. CoRR abs/2105.06861 (2021) - Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas D. Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister:
AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions. CoRR abs/2107.05451 (2021) - Zudi Lin, Donglai Wei, Mariela D. Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K, Silin Zou, Nils Wendt, Jonathan Boulanger-Weill, Xueying Wang, Nagaraju Dhanyasi, Ignacio Arganda-Carreras, Florian Engert, Jeff Lichtman, Hanspeter Pfister:
NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale. CoRR abs/2107.05840 (2021) - Zudi Lin, Donglai Wei, Jeff Lichtman, Hanspeter Pfister:
PyTorch Connectomics: A Scalable and Flexible Segmentation Framework for EM Connectomics. CoRR abs/2112.05754 (2021) - 2020
- Abhimanyu Talwar, Zudi Lin
, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Dong Jang, Xueying Wang
, Jeff Lichtman, Hanspeter Pfister
:
A Topological Nomenclature for 3D Shape Analysis in Connectomics. CVPR Workshops 2020: 4245-4253 - Zudi Lin
, Donglai Wei, Won-Dong Jang, Siyan Zhou, Xupeng Chen
, Xueying Wang
, Richard Schalek, Daniel R. Berger, Brian Matejek, Lee Kamentsky, Adi Suissa-Peleg, Daniel Haehn
, Thouis R. Jones
, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister
:
Two Stream Active Query Suggestion for Active Learning in Connectomics. ECCV (18) 2020: 103-120 - Lu Mi, Hao Wang, Yaron Meirovitch, Richard Schalek, Srinivas C. Turaga, Jeff W. Lichtman, Aravinthan D. T. Samuel, Nir Shavit:
Learning Guided Electron Microscopy with Active Acquisition. MICCAI (5) 2020: 77-87 - Donglai Wei, Zudi Lin
, Daniel Franco-Barranco
, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang
, Ignacio Arganda-Carreras
, Jeff W. Lichtman, Hanspeter Pfister
:
MitoEM Dataset: Large-Scale 3D Mitochondria Instance Segmentation from EM Images. MICCAI (5) 2020: 66-76 - 2019
- Douglas H. Roossien
, Benjamin V. Sadis, Yan Yan, John M. Webb, Lia Y. Min, Aslan S. Dizaji
, Luke J. Bogart, Cristina Mazuski
, Robert S. Huth, Johanna S. Stecher, Sriakhila Akula, Fred Y. Shen, Ye Li
, Tingxin Xiao, Madeleine Vandenbrink, Jeff W. Lichtman, Takao K. Hensch, Erik D. Herzog, Dawen Cai
:
Multispectral tracing in densely labeled mouse brain with nTracer. Bioinform. 35(18): 3544-3546 (2019) - Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Dong Jang, Xueying Wang, Jeff W. Lichtman, Hanspeter Pfister:
A Topological Nomenclature for 3D Shape Analysis in Connectomics. CoRR abs/1909.12887 (2019) - 2018
- Daniel Haehn
, Verena Kaynig, James Tompkin
, Jeff W. Lichtman, Hanspeter Pfister
:
Guided Proofreading of Automatic Segmentations for Connectomics. CVPR 2018: 9319-9328 - Toufiq Parag, Daniel R. Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
:
Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets. ECCV Workshops (6) 2018: 354-364 - Toufiq Parag, Daniel R. Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister:
Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets. CoRR abs/1807.02739 (2018) - Moritz Helmstaedter, Jeff Lichtman, Nir Shavit:
High Throughput Connectomics (Dagstuhl Seminar 18481). Dagstuhl Reports 8(11): 112-138 (2018) - 2017
- Daniel Haehn
, John Hoffer, Brian Matejek, Adi Suissa-Peleg, Ali K. Al-Awami
, Lee Kamentsky, Felix Gonda, Eagon Meng, William Zhang, Richard Schalek, Alyssa Wilson
, Toufiq Parag, Johanna Beyer, Verena Kaynig, Thouis R. Jones
, James Tompkin
, Markus Hadwiger, Jeff W. Lichtman, Hanspeter Pfister
:
Scalable Interactive Visualization for Connectomics. Informatics 4(3): 29 (2017) - David Grant Colburn Hildebrand
, Marcelo Cicconet, Russel Miguel Torres, Woohyuk Choi, Tran Minh Quan, Jungmin Moon, Arthur W. Wetzel, Andrew Scott Champion, Brett J. Graham, Owen Randlett, George S. Plummer
, Ruben Portugues
, Isaac Henry Bianco
, Stephan Saalfeld, Alexander D. Baden, Kunal Lillaney, Randal C. Burns
, Joshua T. Vogelstein, Alexander Schier
, Wei-Chung Allen Lee
, Won-Ki Jeong, Jeff William Lichtman, Florian Engert:
Whole-brain serial-section electron microscopy in larval zebrafish. Nat. 545(7654): 345-349 (2017) - Felix Gonda, Verena Kaynig, Thouis R. Jones
, Daniel Haehn
, Jeff W. Lichtman, Toufiq Parag, Hanspeter Pfister
:
ICON: An interactive approach to train deep neural networks for segmentation of neuronal structures. ISBI 2017: 327-331
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