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Publication search results
found 8 matches
- 2023
- John Erol Evangelista
, Zhuorui Xie, Giacomo B. Marino
, Nhi Nguyen, Daniel J. B. Clarke
, Avi Ma'ayan
:
Enrichr-KG: bridging enrichment analysis across multiple libraries. Nucleic Acids Res. 51(W1): 168-179 (2023) - 2022
- Minji Jeon, Zhuorui Xie, John Erol Evangelista, Megan L. Wojciechowicz, Daniel J. B. Clarke
, Avi Ma'ayan:
Transforming L1000 profiles to RNA-seq-like profiles with deep learning. BMC Bioinform. 23(1): 374 (2022) - John Erol Evangelista
, Daniel J. B. Clarke
, Zhuorui Xie, Alexander Lachmann
, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic
, Avi Ma'ayan
:
SigCom LINCS: data and metadata search engine for a million gene expression signatures. Nucleic Acids Res. 50(W1): 697-709 (2022) - 2021
- Eryk Kropiwnicki, John Erol Evangelista
, Daniel J. Stein, Daniel J. B. Clarke
, Alexander Lachmann
, Maxim V. Kuleshov
, Minji Jeon, Kathleen M. Jagodnik
, Avi Ma'ayan:
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning. Database J. Biol. Databases Curation 2021 (2021) - Maxim V. Kuleshov, Zhuorui Xie, Alexandra B. K. London, Janice Yang
, John Erol Evangelista
, Alexander Lachmann
, Ingrid Shu, Denis Torre, Avi Ma'ayan
:
KEA3: improved kinase enrichment analysis via data integration. Nucleic Acids Res. 49(Webserver-Issue): 304-316 (2021) - Daniel J. B. Clarke
, Minji Jeon
, Daniel J. Stein
, Nicole Moiseyev
, Eryk Kropiwnicki, Charles Dai, Zhuorui Xie
, Megan L. Wojciechowicz
, Skylar Litz, Jason Hom, John Erol Evangelista
, Lucas Goldman
, Serena Zhang
, Christine Yoon
, Tahmid Ahamed, Samantha Bhuiyan, Minxuan Cheng, Julie Karam, Kathleen M. Jagodnik
, Ingrid Shu
, Alexander Lachmann, Sam Ayling, Sherry L. Jenkins
, Avi Ma'ayan
:
Appyters: Turning Jupyter Notebooks into data-driven web apps. Patterns 2(3): 100213 (2021) - 2020
- Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke
, Alexander Lachmann, John Erol Evangelista
, Avi Ma'ayan
, Mario Medvedovic
, Stephan C. Schürer
:
LINCS Data Portal 2.0: next generation access point for perturbation-response signatures. Nucleic Acids Res. 48(Database-Issue): D431-D439 (2020) - Maxim V. Kuleshov
, Daniel J. Stein
, Daniel J. B. Clarke
, Eryk Kropiwnicki, Kathleen M. Jagodnik, Alon Bartal, John Erol Evangelista
, Jason Hom, Minxuan Cheng, Allison Bailey, Abigail Zhou, Laura B. Ferguson, Alexander Lachmann, Avi Ma'ayan:
The COVID-19 Drug and Gene Set Library. Patterns 1(6): 100090 (2020)
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