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- Matthew T. Kaufman
University of Chicago, Department of Organismal Biology and Anatomy, IL, USA
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Publication search results
found 28 matches
- 2024
- Allana Santiago
, Bernadette Matthews
, Won Sun Chen
, Therese Keane
, Jordy Kaufman
:
Immersive virtual reality for unintentional injury prevention training with children: A systematic review. Comput. Educ. X Real. 5: 100072 (2024) - 2023
- Xi Zhu
, Yoojean Kim, Orren Ravid, Xiaofu He, Benjamin Suarez-Jimenez, Sigal Zilcha-Mano, Amit Lazarov
, Seonjoo Lee, Chadi G. Abdallah
, Michael Angstadt, Christopher L. Averill
, C. Lexi Baird
, Lee Baugh, Jennifer Urbano Blackford
, Jessica Bomyea, Steven E. Bruce
, Richard A. Bryant
, Zhihong Cao, Kyle Choi, Josh M. Cisler, Andrew S. Cotton, Judith K. Daniels
, Nicholas D. Davenport, Richard J. Davidson
, Michael D. De Bellis, Emily L. Dennis
, Maria Densmore, Terri A. deRoon-Cassini
, Seth G. Disner
, Wissam El-Hage
, Amit Etkin, Negar Fani, Kelene A. Fercho
, Jacklynn M. Fitzgerald
, Gina L. Forster, Jessie L. Frijling, Elbert Geuze
, Atilla Gonenc, Evan M. Gordon, Staci Gruber, Daniel W. Grupe
, Jeffrey P. Guenette
, Courtney C. Haswell, Ryan J. Herringa, Julia Herzog, David Bernd Hofmann, Bobak Hosseini, Anna R. Hudson
, Ashley A. Huggins
, Jonathan C. Ipser
, Neda Jahanshad, Meilin Jia-Richards, Tanja Jovanovic, Milissa L. Kaufman, Mitzy Kennis, Anthony King, Philipp Kinzel, Saskia B. J. Koch
, Inga Koerte, Sheri-Michelle Koopowitz
, Mayuresh S. Korgaonkar, John H. Krystal
, Ruth A. Lanius, Christine L. Larson
, Lauren A. M. Lebois, Gen Li
, Israel Liberzon, Guang Ming Lu, Yifeng Luo, Vincent A. Magnotta
, Antje Manthey, Adi Maron-Katz, Geoffery May, Katie A. McLaughlin, Sven C. Mueller, Laura Nawijn, Steven M. Nelson, Richard W. J. Neufeld, Jack B. Nitschke, Erin O'Leary
, Bunmi O. Olatunji, Miranda Olff, Matthew Peverill, K. Luan Phan, Rongfeng Qi, Yann Quidé
, Ivan Rektor, Kerry J. Ressler, Pavel Riha
, Marisa Ross, Isabelle M. Rosso, Lauren E. Salminen, Kelly A. Sambrook, Christian Schmahl, Martha Elizabeth Shenton, Margaret A. Sheridan
, Chiahao Shih, Maurizio Sicorello
, Anika Sierk, Alan N. Simmons, Raluca M. Simons, Jeffrey S. Simons, Scott R. Sponheim, Murray B. Stein, Dan J. Stein
, Jennifer S. Stevens, Thomas Straube, Delin Sun, Jean Théberge
, Paul M. Thompson
, Sophia I. Thomopoulos, Nic J. A. van der Wee, Steven J. A. van der Werff, Theo G. M. van Erp
, Sanne J. H. van Rooij
, Mirjam van Zuiden
, Tim Varkevisser
, Dick J. Veltman, Robert R. J. M. Vermeiren, Henrik Walter
, Li Wang, Xin Wang, Carissa N. Weis
, Sherry Winternitz, Hong Xie, Ye Zhu, Melanie Wall, Yuval Neria, Rajendra A. Morey
:
Neuroimaging-based classification of PTSD using data-driven computational approaches: A multisite big data study from the ENIGMA-PGC PTSD consortium. NeuroImage 283: 120412 (2023) - Thomas B. K. Watkins, Emma C. Colliver, Matthew R. Huska
, Tom L. Kaufmann, Emilia L. Lim, Cody B. Duncan
, Kerstin Haase, Peter Van Loo, Charles Swanton, Nicholas McGranahan, Roland F. Schwarz
:
Refphase: Multi-sample phasing reveals haplotype-specific copy number heterogeneity. PLoS Comput. Biol. 19(10) (2023) - 2022
- Ali Agha, Kyohei Otsu, Benjamin Morrell, David D. Fan, Rohan Thakker, Angel Santamaria-Navarro, Sung-Kyun Kim, Amanda Bouman, Xianmei Lei, Jeffrey A. Edlund, Muhammad Fadhil Ginting, Kamak Ebadi, Matthew Anderson, Torkom Pailevanian, Edward Terry, Michael T. Wolf, Andrea Tagliabue, Tiago Vaquero, Matteo Palieri, Scott Tepsuporn, Yun Chang, Arash Kalantari, Fernando Chavez, Brett Thomas Lopez, Nobuhiro Funabiki, Gregory Miles, Thomas Touma, Alessandro Buscicchio, Jesus Tordesillas, Nikhilesh Alatur, Jeremy Nash, William Walsh, Sunggoo Jung, Hanseob Lee, Christoforos Kanellakis, John Mayo, Scott Harper, Marcel Kaufmann, Anushri Dixit, Gustavo Correa, Carlyn Lee, Jay Gao, Gene Merewether, Jairo Maldonado-Contreras, Gautam Salhotra, Maíra Saboia da Silva, Benjamin Ramtoula, Seyed Abolfazl Fakoorian, Alexander Hatteland, Taeyeon Kim, Tara Bartlett, Alex Stephens, Leon Kim, Chuck Bergh, Eric Heiden, Thomas Lew, Abhishek Cauligi, Tristan Heywood, Andrew Kramer, Henry A. Leopold, Hovhannes Melikyan, Hyungho Chris Choi, Shreyansh Daftry, Olivier Toupet, Inhwan Wee, Abhishek Thakur, Micah Feras, Giovanni Beltrame, George Nikolakopoulos, David Hyunchul Shim, Luca Carlone, Joel Burdick:
NeBula: TEAM CoSTAR's Robotic Autonomy Solution that Won Phase II of DARPA Subterranean Challenge. Field Robotics 2(1): 1432-1506 (2022) - Delin Sun, Gopalkumar Rakesh
, Courtney C. Haswell, Mark W. Logue, C. Lexi Baird, Erin O'Leary
, Andrew S. Cotton, Hong Xie
, Marijo B. Tamburrino, Tian Chen, Emily L. Dennis
, Neda Jahanshad, Lauren E. Salminen
, Sophia I. Thomopoulos, Faisal Rashid, Christopher R. K. Ching, Saskia B. J. Koch
, Jessie L. Frijling, Laura Nawijn
, Mirjam van Zuiden
, Xi Zhu, Benjamin Suarez-Jimenez
, Anika Sierk, Henrik Walter
, Antje Manthey, Jennifer S. Stevens
, Negar Fani
, Sanne J. H. van Rooij
, Murray B. Stein
, Jessica Bomyea, Inga Koerte
, Kyle Choi
, Steven J. A. van der Werff, Robert R. J. M. Vermeiren, Julia Herzog, Lauren A. M. Lebois
, Justin T. Baker, Elizabeth A. Olson
, Thomas Straube, Mayuresh S. Korgaonkar
, Elpiniki Andrew, Ye Zhu, Gen Li
, Jonathan Ipser
, Anna R. Hudson
, Matthew Peverill
, Kelly A. Sambrook, Evan Gordon, Lee Baugh
, Gina L. Forster, Raluca M. Simons, Jeffrey S. Simons, Vincent Magnotta
, Adi Maron-Katz, Stefan du Plessis, Seth G. Disner
, Nicholas D. Davenport
, Daniel W. Grupe
, Jack B. Nitschke, Terri A. deRoon-Cassini
, Jacklynn M. Fitzgerald
, John H. Krystal
, Ifat Levy, Miranda Olff
, Dick J. Veltman, Li Wang, Yuval Neria, Michael D. De Bellis, Tanja Jovanovic
, Judith K. Daniels
, Martha Shenton, Nic J. A. van der Wee, Christian Schmahl, Milissa L. Kaufman, Isabelle M. Rosso
, Scott R. Sponheim
, David Bernd Hofmann
, Richard A. Bryant, Kelene A. Fercho, Dan J. Stein
, Sven C. Mueller, Bobak Hosseini, K. Luan Phan, Katie A. McLaughlin, Richard J. Davidson
, Christine L. Larson
, Geoffrey May, Steven M. Nelson, Chadi G. Abdallah
, Hassaan Gomaa, Amit Etkin, Zelekha A. Seedat, Ilan Harpaz-Rotem, Israel Liberzon
, Theo G. M. van Erp, Yann Quidé
, Xin Wang, Paul M. Thompson
, Rajendra A. Morey:
A comparison of methods to harmonize cortical thickness measurements across scanners and sites. NeuroImage 261: 119509 (2022) - 2021
- Paola Araiza-Alba
, Therese Keane
, Bernadette Matthews
, Kate Simpson
, Grace Strugnell, Won Sun Chen, Jordy Kaufman
:
The potential of 360-degree virtual reality videos to teach water-safety skills to children. Comput. Educ. 163: 104096 (2021) - Aoife Larkin, Steven J. Marygold, Giulia Antonazzo, Helen Attrill
, Gilberto dos Santos, Phani V. Garapati, Joshua L. Goodman, L. Sian Gramates, Gillian H. Millburn, Victor B. Strelets, Christopher J. Tabone, Jim Thurmond, Norbert Perrimon, Susan Russo Gelbart, Julie Agapite, Kris Broll, Madeline A. Crosby, Kathleen Falls, Victoria Jenkins, Ian Longden, Beverley Matthews, Carol Sutherland, Pinglei Zhou, Mark Zytkovicz, Nick Brown, Phani Garapati, Steven Marygold, Alexander McLachlan, Clare Pilgrim, Arzu Ozturk-Colak, Vitor Trovisco, Thomas C. Kaufman, Brian R. Calvi, Richard Cripps, Tyanna Lovato:
FlyBase: updates to the Drosophila melanogaster knowledge base. Nucleic Acids Res. 49(Database-Issue): D899-D907 (2021) - Felix Pei, Joel Ye, David M. Zoltowski, Anqi Wu, Raeed H. Chowdhury, Hansem Sohn, Joseph E. O'Doherty, Krishna V. Shenoy, Matthew T. Kaufman, Mark M. Churchland, Mehrdad Jazayeri, Lee E. Miller, Jonathan W. Pillow, Il Memming Park, Eva L. Dyer, Chethan Pandarinath:
Neural Latents Benchmark '21: Evaluating latent variable models of neural population activity. NeurIPS Datasets and Benchmarks 2021 - Feng Zhu, Andrew R. Sedler, Harrison A. Grier, Nauman Ahad, Mark A. Davenport, Matthew T. Kaufman, Andrea Giovannucci, Chethan Pandarinath:
Deep inference of latent dynamics with spatio-temporal super-resolution using selective backpropagation through time. NeurIPS 2021: 2331-2345 - Ali Agha, Kyohei Otsu, Benjamin Morrell, David D. Fan, Rohan Thakker, Angel Santamaria-Navarro, Sung-Kyun Kim, Amanda Bouman, Xianmei Lei, Jeffrey A. Edlund, Muhammad Fadhil Ginting, Kamak Ebadi, Matthew Anderson, Torkom Pailevanian, Edward Terry, Michael T. Wolf, Andrea Tagliabue, Tiago Stegun Vaquero, Matteo Palieri, Scott Tepsuporn, Yun Chang, Arash Kalantari, Fernando Chavez, Brett Thomas Lopez, Nobuhiro Funabiki, Gregory Miles, Thomas Touma, Alessandro Buscicchio, Jesus Tordesillas, Nikhilesh Alatur, Jeremy Nash, William Walsh, Sunggoo Jung, Hanseob Lee, Christoforos Kanellakis, John Mayo, Scott Harper, Marcel Kaufmann, Anushri Dixit, Gustavo Correa, Carlyn Lee, Jay Gao, Gene Merewether, Jairo Maldonado-Contreras, Gautam Salhotra, Maíra Saboia da Silva, Benjamin Ramtoula, Yuki Kubo, Seyed Abolfazl Fakoorian, Alexander Hatteland, Taeyeon Kim, Tara Bartlett, Alex Stephens
, Leon Kim, Chuck Bergh, Eric Heiden, Thomas Lew, Abhishek Cauligi, Tristan Heywood, Andrew Kramer, Henry A. Leopold, Hyungho Chris Choi, Shreyansh Daftry, Olivier Toupet, Inhwan Wee, Abhishek Thakur, Micah Feras, Giovanni Beltrame, George Nikolakopoulos, David Hyunchul Shim, Luca Carlone, Joel Burdick:
NeBula: Quest for Robotic Autonomy in Challenging Environments; TEAM CoSTAR at the DARPA Subterranean Challenge. CoRR abs/2103.11470 (2021) - Felix Pei, Joel Ye, David M. Zoltowski, Anqi Wu, Raeed H. Chowdhury, Hansem Sohn, Joseph E. O'Doherty, Krishna V. Shenoy, Matthew T. Kaufman, Mark M. Churchland, Mehrdad Jazayeri, Lee E. Miller, Jonathan W. Pillow, Il Memming Park, Eva L. Dyer, Chethan Pandarinath:
Neural Latents Benchmark '21: Evaluating latent variable models of neural population activity. CoRR abs/2109.04463 (2021) - Feng Zhu, Andrew R. Sedler, Harrison A. Grier, Nauman Ahad, Mark A. Davenport, Matthew T. Kaufman, Andrea Giovannucci, Chethan Pandarinath:
Deep inference of latent dynamics with spatio-temporal super-resolution using selective backpropagation through time. CoRR abs/2111.00070 (2021) - 2020
- Julie Agapite, Laurent-Philippe Albou
, Suzi A. Aleksander
, Joanna Argasinska
, Valerio Arnaboldi
, Helen Attrill, Susan M. Bello, Judith A. Blake, Olin Blodgett, Yvonne M. Bradford, Carol J. Bult, Scott Cain, Brian R. Calvi, Seth Carbon, Juancarlos Chan, Wen J. Chen, J. Michael Cherry
, Jae-Hyoung Cho, Karen R. Christie, Madeline A. Crosby, Jeff de Pons, Mary E. Dolan, Gilberto dos Santos, Barbara Dunn, Nathan A. Dunn, Anne E. Eagle, Dustin Ebert, Stacia R. Engel, David Fashena, Ken Frazer, Sibyl Gao, Felix Gondwe, Joshua L. Goodman, L. Sian Gramates, Christian A. Grove, Todd W. Harris, Marie-Claire Harrison
, Douglas G. Howe, Kevin L. Howe
, Sagar Jha, James A. Kadin, Thomas C. Kaufman, Patrick Kalita, Kalpana Karra, Ranjana Kishore, Stanley J. F. Laulederkind, Raymond Y. N. Lee, Kevin A. MacPherson, Steven J. Marygold, Beverley Matthews, Gillian H. Millburn, Stuart R. Miyasato, Sierra A. T. Moxon, Hans-Michael Müller, Christopher J. Mungall, Anushya Muruganujan, Tremayne Mushayahama, Robert S. Nash, Patrick Ng, Michael Paulini
, Norbert Perrimon, Christian Pich, Daniela Raciti, Joel E. Richardson, Matthew Russell, Susan Russo Gelbart, Leyla Ruzicka, Kevin Schaper, Mary Shimoyama, Matt Simison, Cynthia L. Smith, David R. Shaw, Ajay Shrivatsav, Marek S. Skrzypek, Jennifer R. Smith, Paul W. Sternberg, Christopher J. Tabone, Paul D. Thomas
, Jyothi Thota, Sabrina Toro, Monika Tomczuk, Marek Tutaj, Monika Tutaj, Jose-Maria Urbano
, Kimberly Van Auken, Ceri E. Van Slyke, Shur-Jen Wang, Shuai Weng, Monte Westerfield, Gary Williams, Edith D. Wong, Adam Wright, Karen Yook:
Alliance of Genome Resources Portal: unified model organism research platform. Nucleic Acids Res. 48(Database-Issue): D650-D658 (2020) - 2019
- Jim Thurmond
, Joshua L. Goodman
, Victor B. Strelets, Helen Attrill
, L. Sian Gramates
, Steven J. Marygold
, Beverley Matthews, Gillian H. Millburn, Giulia Antonazzo
, Vitor Trovisco, Thomas C. Kaufman, Brian R. Calvi, The FlyBase Consortium:
FlyBase 2.0: the next generation. Nucleic Acids Res. 47(Database-Issue): D759-D765 (2019) - 2018
- Benjamin J. Duncan, Andrew J. Solomon, Lu Zheng, Bradley N. Doebbeling, Stephanie K. Furniss, María Adela Grando, Matthew M. Burton, Karl A. Poterack, Tim Miksch, Richard Helmers, David R. Kaufman:
In Search of Vital Signs: A Comparative Study of EHR Documentation. AMIA 2018 - María Adela Grando, Areti Manataki, Stephanie K. Furniss, Benjamin J. Duncan, Andrew J. Solomon, David R. Kaufman, Sarah Hirn, Robert Sunday, Joanne Bouchereau, Bradley N. Doebbeling, Matthew M. Burton, Karl A. Poterack, Tim Miksch, Richard Helmers:
Multi-Method Study of Electronic Health Records Workflows. AMIA 2018 - 2017
- Andrea Giovannucci, Johannes Friedrich, Matthew T. Kaufman, Anne Churchland, Dmitri B. Chklovskii, Liam Paninski, Eftychios A. Pnevmatikakis:
OnACID: Online Analysis of Calcium Imaging Data in Real Time. NIPS 2017: 2381-2391 - 2016
- Jeffrey S. Seely
, Matthew T. Kaufman
, Stephen I. Ryu, Krishna V. Shenoy, John P. Cunningham, Mark M. Churchland:
Tensor Analysis Reveals Distinct Population Structure that Parallels the Different Computational Roles of Areas M1 and V1. PLoS Comput. Biol. 12(11) (2016) - Bradley N. Doebbeling, Matthew M. Burton, David R. Kaufman, Karl A. Poterack, Mac McCullough, Adela Grando, Tim Miksch, Richard Helmers:
Integrated Workflow Capture in an EHR Conversion: Standardizing on Best Practice Methods. AMIA 2016 - Anahit Safaryan, Sascha Kaufmann, Tara L. Andrews:
Critical Edition as Graph: The Chronicle of Matthew of Edessa Online. DH 2016: 879-880 - 2013
- James E. Galagan
, Kyle J. Minch, Matthew Peterson, Anna Lyubetskaya
, Elham Azizi
, Linsday Sweet, Antonio Gomes, Tige R. Rustad, Gregory Dolganov, Irina Glotova, Thomas Abeel
, Chris Mahwinney, Adam D. Kennedy, René Allard, William Brabant, Andrew Krueger, Suma Jaini, Brent Honda, Wen-Han Yu
, Mark J. Hickey, Jeremy Zucker
, Christopher Garay
, Brian Weiner, Peter Sisk, Christian Stolte
, Jessica K. Winkler, Yves Van de Peer
, Paul Iazzetti, Diogo Camacho
, Jonathan M. Dreyfuss, Yang Liu, Anca Dorhoi, Hans-Joachim Mollenkopf
, Paul Drogaris, Julie Lamontagne, Yiyong Zhou, Julie Piquenot, Sang Tae Park, Sahadevan Raman
, Stefan H. E. Kaufmann
, Robert P. Mohney, Daniel Chelsky, D. Branch Moody, David R. Sherman, Gary K. Schoolnik:
The Mycobacterium tuberculosis regulatory network and hypoxia. Nat. 499(7457): 178-183 (2013) - Matthew T. Kaufman
, Anne K. Churchland:
Cognitive neuroscience: Sensory noise drives bad decisions. Nat. 496(7444): 172-173 (2013) - Kun Hu, Christian Thoens, Simone Bianco, Stefan Edlund, Matthew A. Davis, Judith V. Douglas, James H. Kaufman:
Modeling the Dynamics of Dengue Fever. SBP 2013: 486-494 - 2012
- Benjamin R. Cowley, Matthew T. Kaufman
, Mark M. Churchland, Stephen I. Ryu, Krishna V. Shenoy, Byron M. Yu:
DataHigh: Graphical user interface for visualizing and interacting with high-dimensional neural activity. EMBC 2012: 4607-4610 - 2007
- Dan Manson, Anna Carlin, Steve Ramos, Alain Gyger, Matthew Kaufman, Jeremy Treichelt:
Is the Open Way a Better Way? Digital Forensics Using Open Source Tools. HICSS 2007: 266 - 2006
- Glenn Deen, Matthew Hammer, John Bethencourt, Iris Eiron, John C. Thomas, James H. Kaufman:
Running Quake II on a grid. IBM Syst. J. 45(1): 21-44 (2006) - 2004
- Dongkyu Choi, Matthew T. Kaufman, Pat Langley, Negin Nejati, Daniel G. Shapiro:
An Architecture for Persistent Reactive Behavior. AAMAS 2004: 988-995 - 1997
- William M. Gelbart, Madeline A. Crosby, Beverley Matthews, W. P. Rindone, J. Chillemi, S. Russo Twombly, David B. Emmert, Michael Ashburner, Rachel A. Drysdale, E. Whitfield, Gillian H. Millburn, A. de Grey, Thomas C. Kaufman, K. Matthews, David R. Gilbert, Victor B. Strelets, C. Tolstoshev:
FlyBase: a Drosophila database. The FlyBase consortium. Nucleic Acids Res. 25(1): 63-66 (1997)
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