• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 31 matches

• 2022
• 
  Teerna Bhattacharyya, Soumya Nayak, Smit Goswami, Vasundhara Gadiyaram, Oommen K. Mathew, Ramanathan Sowdhamini:
  PASS2.7: a database containing structure-based sequence alignments and associated features of protein domain superfamilies from SCOPe. Database J. Biol. Databases Curation 2022(2022) (2022)
• 2019
• 
  Pritha Ghosh, Teerna Bhattacharyya, Oommen K. Mathew, Ramanathan Sowdhamini:
  PASS2 version 6: a database of structure-based sequence alignments of protein domain superfamilies in accordance with SCOPe. Database J. Biol. Databases Curation 2019: baz028 (2019)
• 
  Pei-Yau Lung, Zhe He, Tingting Zhao, Disa Yu, Jinfeng Zhang:
  Extracting chemical-protein interactions from literature using sentence structure analysis and feature engineering. Database J. Biol. Databases Curation 2019: bay138 (2019)
• 
  David R. Armstrong, John M. Berrisford, Matthew J. Conroy, Alice R. Clark, Deepti Gupta, Abhik Mukhopadhyay:
  Protein Structure Databases. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 460-471
• 2018
• 
  Justin S. Diamond, Yang Zhang:
  THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes. Database J. Biol. Databases Curation 2018: bay090 (2018)
• 
  Zafer Aydin, Oguz Kaynar, Yasin Gormez:
  Comparison of NR and UniClust databases for protein secondary structure prediction. SIU 2018: 1-4
• 2016
• 
  Dariusz Mrozek, Bartek Socha, Stanislaw Kozielski, Bozena Malysiak-Mrozek:
  An efficient and flexible scanning of databases of protein secondary structures - with the segment index and multithreaded alignment. J. Intell. Inf. Syst. 46(1): 213-233 (2016)
• 2013
• 
  Juergen Haas, Steven Roth, Konstantin Arnold, Florian Kiefer, Tobias Schmidt, Lorenza Bordoli, Torsten Schwede:
  The Protein Model Portal - a comprehensive resource for protein structure and model information. Database J. Biol. Databases Curation 2013 (2013)
• 
  Sebastian Maurer-Stroh, He Gao, Hao Han, Lies Baeten, Joost Schymkowitz, Frederic Rousseau, Louxin Zhang, Frank Eisenhaber:
  Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif. J. Bioinform. Comput. Biol. 11(1) (2013)
• 2012
• 
  Tien-Dao Luu, Alin-Mihai Rusu, Vincent Walter, Raymond Ripp, Luc Moulinier, Jean Muller, Thierry Toursel, Julie Dawn Thompson, Olivier Poch, Hoan Nguyen:
  MSV3d: database of human MisSense variants mapped to 3D protein structure. Database J. Biol. Databases Curation 2012 (2012)
• 
  Martin Weisel, Hans-Marcus Bitter, François Diederich, W. Venus So, Rama Kondru:
  PROLIX: Rapid Mining of Protein-Ligand Interactions in Large Crystal Structure Databases. J. Chem. Inf. Model. 52(6): 1450-1461 (2012)
• 2010
• 
  Thomas Triplet, Matthew D. Shortridge, Mark A. Griep, Jaime L. Stark, Robert Powers, Peter Z. Revesz:
  PROFESS: a PROtein Function, Evolution, Structure and Sequence database. Database J. Biol. Databases Curation 2010 (2010)
• 
  Yoshifumi Takahashi, Susumu Kuroki, Keiichi Tamura, Hajime Kitakami:
  Searching for Index-based Similar Substructure Using RMSD in Protein Structure Databases. IKE 2010: 431-437
• 2009
• 
  R. Travis Moreland, Joseph F. Ryan, Christopher Pan, Andreas D. Baxevanis:
  The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family. Database J. Biol. Databases Curation 2009 (2009)
• 
  Antonis Koussounadis, Oliver Redfern, David T. Jones:
  Improving classification in protein structure databases using text mining. BMC Bioinform. 10 (2009)
• 
  Yoshifumi Takahashi, Susumu Kuroki, Keiichi Tamura, Hajime Kitakami:
  A Method for Constructing Disk-based Indexes for 3-D Protein Structure Databases. IKE 2009: 658-662
• 2008
• 
  Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura:
  Protein structure databases with new web services for structural biology and biomedical research. Briefings Bioinform. 9(4): 276-285 (2008)
• 
  Liisa Holm, S. Kääriäinen, Päivi Rosenström, A. Schenkel:
  Searching protein structure databases with DaliLite v.3. Bioinform. 24(23): 2780-2781 (2008)
• 2004
• 
  Nils Weskamp, Daniel Kuhn, Eyke Hüllermeier, Gerhard Klebe:
  Efficient similarity search in protein structure databases by k-clique hashing. Bioinform. 20(10): 1522-1526 (2004)
• 
  Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh:
  Index-based Similarity Search for Protein Structure Databases. J. Bioinform. Comput. Biol. 2(1): 99-126 (2004)
• 
  Sung-Hee Park, Keun Ho Ryu:
  Effective Filtering for Structural Similarity Search in Protein 3D Structure Databases. DEXA 2004: 761-770
• 
  Sung-Hee Park, Keun Ho Ryu:
  Fast Similarity Search for Protein 3D Structure Databases Using Spatial Topological Patterns. DEXA 2004: 771-780
• 
  Arnab Bhattacharya, Tolga Can, Tamer Kahveci, Ambuj K. Singh, Yuan-Fang Wang:
  ProGreSS: Simultaneous Searching of Protein Databases by Sequence and Structure. Pacific Symposium on Biocomputing 2004: 264-275
• 2003
• 
  William M. Shui, Raymond K. Wong, Stephen C. Graham, Lawrence K. Lee, W. Bret Church:
  A New Approach to Protein Structure and Function Analysis Using Semi-structured Databases. APBC 2003: 61-69
• 
  Orhan Çamoglu, Tamer Kahveci, Ambuj K. Singh:
  Towards Index-based Similarity Search for Protein Structure Databases. CSB 2003: 148-158
• 
  William M. Shui, Raymond K. Wong, Stephen C. Graham, Lawrence K. Lee, W. Bret Church:
  Integrating, Managing and Analyzing Protein Structures with XML Databases. DASFAA 2003: 319-326
• 
  Nils Weskamp, Daniel Kuhn, Eyke Hüllermeier, Gerhard Klebe:
  Efficient Similarity Search in Protein Structure Databases: Improving Cliqae-Detection through Clique Hashing. German Conference on Bioinformatics 2003: 179-184
• 2000
• 
  Anders Wallqvist, Yoshifumi Fukunishi, Lynne Reed Murphy, Addi Fadel, Ronald M. Levy:
  Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases. Bioinform. 16(11): 988-1002 (2000)
• 1999
• 
  Janice I. Glasgow, Evan W. Steeg, Suzanne Fortier:
  Motif Discovery in Protein Structure Databases. Pattern Discovery in Biomolecular Data 1999: 77-96
• 1989
• 
  Peter J. Artymiuk, David W. Rice, Eleanor M. Mitchell, Peter Willett:
  Searching techniques for databases of protein secondary structures. J. Inf. Sci. 15(4-5): 287-298 (1989)

skipping 1 more match