• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 23 matches

• 2021
• 
  Abhijit Chakraborty, Ferhat Ay, Ramana V. Davuluri:
  ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs. Bioinform. 37(20): 3412-3420 (2021)
• 
  Yanrong Ji, Zhihan Zhou, Han Liu, Ramana V. Davuluri:
  DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome. Bioinform. 37(15): 2112-2120 (2021)
• 2019
• 
  Saima Rathore, Hamed Akbari, Spyridon Bakas, Jared Pisapia, Gaurav Shukla, Jeffrey D. Rudie, Xiao Da, Ramana V. Davuluri, Nadia Dahmane, Donald M. O'Rourke, Christos Davatzikos:
  Multivariate Analysis of Preoperative Magnetic Resonance Imaging Reveals Transcriptomic Classification of de novo Glioblastoma Patients. Frontiers Comput. Neurosci. 13: 81 (2019)
• 2017
• 
  Matthew Dapas, Manoj Kandpal, Yingtao Bi, Ramana V. Davuluri:
  Comparative evaluation of isoform-level gene expression estimation algorithms for RNA-seq and exon-array platforms. Briefings Bioinform. 18(2): 260-269 (2017)
• 2015
• 
  Segun Jung, Hongjian Jin, Ramana V. Davuluri:
  Identification of candidate regulatory SNPs by integrative analysis for prostate cancer genome data. BCB 2015: 278-285
• 2014
• 
  Segun Jung, Yingtao Bi, Ramana V. Davuluri:
  Comparison of data discretization methods for cross platform transfer of gene-expression based tumor subtyping classifier. ICCABS 2014: 1-2
• 2013
• 
  Yingtao Bi, Ramana V. Davuluri:
  NPEBseq: nonparametric empirical bayesian-based procedure for differential expression analysis of RNA-seq data. BMC Bioinform. 14: 262 (2013)
• 2011
• 
  Hyunsoo Kim, Yingtao Bi, Sharmistha Pal, Ravi Gupta, Ramana V. Davuluri:
  IsoformEx: Isoform level gene expression estimation using weighted non-negative least squares from mRNA-Seq data. BMC Bioinform. 12: 305 (2011)
• 
  Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Priyankara Wikramasinghe, Ramana V. Davuluri:
  MPromDb update 2010: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-seq experimental data. Nucleic Acids Res. 39(Database-Issue): 92-97 (2011)
• 
  Hao Sun, Jiejun Wu, Priyankara Wikramasinghe, Sharmistha Pal, Ravi Gupta, Anirban Bhattacharyya, Francisco J. Agosto-Perez, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri:
  Genome-wide mapping of RNA Pol-II promoter usage in mouse tissues by ChIP-seq. Nucleic Acids Res. 39(1): 190-201 (2011)
• 2010
• 
  Ravi Gupta, Priyankara Wikramasinghe, Anirban Bhattacharyya, Francisco A. Perez, Sharmistha Pal, Ramana V. Davuluri:
  Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data. BMC Bioinform. 11(S-1): 65 (2010)
• 
  Hyunsoo Kim, Ramana V. Davuluri:
  Data mining of mRNA-Seq and small RNA-Seq data to find microRNA targets. BCB 2010: 499-501
• 
  Hyunsoo Kim, Yingtao Bi, Ramana V. Davuluri:
  Estimating the Expression of Transcript Isoforms from mRNA-Seq via Nonnegative Least Squares. BIBE 2010: 296-297
• 2009
• 
  Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri:
  An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules. BMC Syst. Biol. 3: 73 (2009)
• 2006
• 
  Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew:
  A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha. Bioinform. 22(18): 2210-2216 (2006)
• 
  Victor X. Jin, Gregory A. Singer, Francisco J. Agosto-Perez, Sandya Liyanarachchi, Ramana V. Davuluri:
  Genome-wide analysis of core promoter elements from conserved human and mouse orthologous pairs. BMC Bioinform. 7: 114 (2006)
• 
  Hao Sun, Saranyan K. Palaniswamy, Twyla T. Pohar, Victor X. Jin, Tim Hui-Ming Huang, Ramana V. Davuluri:
  MPromDb: an integrated resource for annotation and visualization of mammalian gene promoters and ChIP-chip experimental data. Nucleic Acids Res. 34(Database-Issue): 98-103 (2006)
• 2005
• 
  Saranyan K. Palaniswamy, Victor X. Jin, Hao Sun, Ramana V. Davuluri:
  OMGProm: a database of orthologous mammalian gene promoters. Bioinform. 21(6): 835-836 (2005)
• 2004
• 
  Hao Sun, Ramana V. Davuluri:
  Java-based application framework for visualization of gene regulatory region annotations. Bioinform. 20(5): 727-734 (2004)
• 
  Twyla T. Pohar, Hao Sun, Ramana V. Davuluri:
  HemoPDB: Hematopoiesis Promoter Database, an information resource of transcriptional regulation in blood cell development. Nucleic Acids Res. 32(Database-Issue): 86-90 (2004)
• 2003
• 
  Ramana V. Davuluri, Hao Sun, Saranyan K. Palaniswamy, Nicole Matthews, Carlos Molina, Mike Kurtz, Erich Grotewold:
  AGRIS: Arabidopsis Gene Regulatory Information Server, an information resource of Arabidopsis cis-regulatory elements and transcription factors. BMC Bioinform. 4: 25 (2003)
• 2001
• 
  Jack E. Tabaska, Ramana V. Davuluri, Michael Q. Zhang:
  Identifying the 3'-terminal exon in human DNA. Bioinform. 17(7): 602-607 (2001)
• 1999
• 
  Nathalie Pavy, Stephane Rombauts, Patrice Déhais, Catherine Mathé, Ramana V. Davuluri, Philippe Leroy, Pierre Rouzé:
  Evaluation of gene prediction software using a genomic data set: application to <$O_SSF>Arabidopsis thaliana<$C_SSF>sequences. Bioinform. 15(11): 887-899 (1999)