• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 26 matches

• 2024
• 
  Karina Martinez, Jon Agirre, Yukie Akune, Kiyoko F. Aoki-Kinoshita, Cecilia N. Arighi, Kristian B. Axelsen, Evan Bolton, Emily Bordeleau, Nathan J. Edwards, Elisa Fadda, Ten Feizi, Catherine A. Hayes, Callum M. Ives, Hiren J. Joshi, Khakurel Krishna Prasad, Sofia Kossida, Frédérique Lisacek, Yan Liu, Thomas Lütteke, Junfeng Ma, Adnan Malik, Maria Jesus Martin, Akul Y. Mehta, Sriram Neelamegham, Kalpana Panneerselvam, René Ranzinger, Sylvie Ricard-Blum, Gaoussou Sanou, Vijay Shanker, Paul D. Thomas, Michael Tiemeyer, James Urban, Randi Vita, Jeet Vora, Yasunori Yamamoto, Raja Mazumder:
  Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy. Database J. Biol. Databases Curation 2024 (2024)
• 2023
• 
  Jarjapu Mahita, Brendan Ha, Anais Gambiez, Sharon L. Schendel, Haoyang Li, Kathryn M. Hastie, S. Moses Dennison, Kan Li, Natalia Kuzmina, Sivakumar Periasamy, Alexander Bukreyev, Jennifer E. Munt, Mary Osei-Twum, Caroline Atyeo, James A. Overton, Randi Vita, Hector Guzman-Orozco, Marcus Mendes, Mari Kojima, Peter J. Halfmann, Yoshihiro Kawaoka, Galit Alter, Luc Gagnon, Ralph S. Baric, Georgia D. Tomaras, Tim Germann, Daniel Bedinger, Jason A. Greenbaum, Erica Ollmann Saphire, Bjoern Peters:
  Coronavirus Immunotherapeutic Consortium Database. Database J. Biol. Databases Curation 2023 (2023)
• 
  Daniel Marrama, William D. Chronister, Luise Westernberg, Randi Vita, Zeynep Kosaloglu-Yalçin, Alessandro Sette, Morten Nielsen, Jason A. Greenbaum, Bjoern Peters:
  PEPMatch: a tool to identify short peptide sequence matches in large sets of proteins. BMC Bioinform. 24(1): 485 (2023)
• 
  Zeynep Kosaloglu-Yalçin, Nina Blazeska, Randi Vita, Hannah Carter, Morten Nielsen, Stephen Schoenberger, Alessandro Sette, Bjoern Peters:
  The Cancer Epitope Database and Analysis Resource (CEDAR). Nucleic Acids Res. 51(D1): 845-852 (2023)
• 2022
• 
  Paul F. Zierep, Randi Vita, Nina Blazeska, Aurélien F. A. Moumbock, Jason A. Greenbaum, Bjoern Peters, Stefan Günther:
  Towards the prediction of non-peptidic epitopes. PLoS Comput. Biol. 18(2) (2022)
• 2021
• 
  Lindy Edwards, Rebecca C. Jackson, James A. Overton, Randi Vita, Nina Blazeska, Bjoern Peters, Alessandro Sette:
  An immunologically friendly classification of non-peptidic ligands. Database J. Biol. Databases Curation 2021 (2021)
• 
  Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters:
  OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies. Database J. Biol. Databases Curation 2021 (2021)
• 
  Randi Vita, Jie Zheng, Rebecca C. Jackson, Damion M. Dooley, James A. Overton, Mark A. Miller, Daniel C. Berrios, Richard H. Scheuermann, Yongqun He, Hande Küçük-McGinty, Mathias Brochhausen, Aisyah Yu Lin, Sagar B. Jain, Marcus C. Chibucos, John Judkins, Michelle G. Giglio, Irene Y. Feng, Gully Burns, Matthew H. Brush, Bjoern Peters, Christian J. Stoeckert Jr.:
  Standardization of assay representation in the Ontology for Biomedical Investigations. Database J. Biol. Databases Curation 2021 (2021)
• 
  Emilio M. Sanfilippo, Oliver Kutz, Nicolas Troquard, Torsten Hahmann, Claudio Masolo, Robert Hoehndorf, Randi Vita, Maria M. Hedblom, Guendalina Righetti, Dusan Sormaz, Walter Terkaj, Tiago Prince Sales, Sergio de Cesare, Frederik Gailly, Giancarlo Guizzardi, Mark Lycett, Chris Partridge, Oscar Pastor, Daniel Beßler, Stefano Borgo, Mohammed Diab, Aldo Gangemi, Alberto Olivares Alarcos, Mihai Pomarlan, Robert Porzel, Ludger Jansen, Mathias Brochhausen, Daniele Porello, Pawel Garbacz, Selja Seppälä, Michael Grüninger, Amanda Vizedom, Damion M. Dooley, Robert Warren, Hande Küçük-McGinty, Matthew Lange, Alsayed Algergawy, Naouel Karam, Friederike Klan, Franck Michel, Ilaria Rosati:
  Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), and the 12th International Conference on Biomedical Ontologies (ICBO 2021), Bolzano, Italy, September 11-18, 2021. CEUR Workshop Proceedings 2969, CEUR-WS.org 2021 [contents]
• 2020
• 
  Randi Vita, James A. Overton, Patrick Dunn, Kei-Hoi Cheung, Steven H. Kleinstein, Alessandro Sette, Bjoern Peters:
  A structured model for immune exposures. Database J. Biol. Databases Curation 2020 (2020)
• 
  Karl Hammar, Oliver Kutz, Anastasia Dimou, Torsten Hahmann, Robert Hoehndorf, Claudio Masolo, Randi Vita, Sarra Ben Abbès, Rim Hantach, Philippe Calvez, Tiago Prince Sales, Daniele Porello, Daniel Beßler, Stefano Borgo, Mohammed Diab, Aldo Gangemi, Alberto Olivares Alarcos, Mihai Pomarlan, Robert Porzel, Martin G. Skjæveland, Daniel P. Lupp, Ian Horrocks, Johan W. Klüwer, Christian Kindermann, Loris Bozzato, Till Mossakowski, Luciano Serafini:
  Proceedings of the Joint Ontology Workshops co-located with the Bolzano Summer of Knowledge (BOSK 2020), Virtual & Bozen-Bolzano, Italy, August 31st to October 7th, 2020. CEUR Workshop Proceedings 2708, CEUR-WS.org 2020 [contents]
• 2019
• 
  James A. Overton, Randi Vita, Patrick Dunn, Julie G. Burel, Syed Ahmad Chan Bukhari, Kei-Hoi Cheung, Steven H. Kleinstein, Alexander D. Diehl, Bjoern Peters:
  Reporting and connecting cell type names and gating definitions through ontologies. BMC Bioinform. 20-S(5): 259-264 (2019)
• 
  Randi Vita, Swapnil Mahajan, James A. Overton, Sandeep Kumar Dhanda, Sheridan Martini, Jason R. Cantrell, Daniel K. Wheeler, Alessandro Sette, Bjoern Peters:
  The Immune Epitope Database (IEDB): 2018 update. Nucleic Acids Res. 47(Database-Issue): D339-D343 (2019)
• 2018
• 
  Randi Vita, James A. Overton, Christopher J. Mungall, Alessandro Sette, Bjoern Peters:
  FAIR principles and the IEDB: short-term improvements and a long-term vision of OBO-foundry mediated machine-actionable interoperability. Database J. Biol. Databases Curation 2018: bax105 (2018)
• 
  Randi Vita, James A. Overton, Bjoern Peters:
  Identification of errors in the IEDB using ontologies. Database J. Biol. Databases Curation 2018: bay005 (2018)
• 
  Sandeep Kumar Dhanda, Randi Vita, Brendan Ha, Alba Grifoni, Bjoern Peters, Alessandro Sette:
  ImmunomeBrowser: a tool to aggregate and visualize complex and heterogeneous epitopes in reference proteins. Bioinform. 34(22): 3931-3933 (2018)
• 
  Randi Vita, Bjoern Peters, James A. Overton, Kei-Hoi Cheung, Steven H. Kleinstein:
  Formalizing the Representation of Immune Exposures for Human Immunology Studies. ICBO 2018
• 2017
• 
  Randi Vita, James A. Overton, Alessandro Sette, Bjoern Peters:
  Better living through ontologies at the Immune Epitope Database. Database J. Biol. Databases Curation 2017: bax014 (2017)
• 
  Gully A. Burns, Randi Vita, James A. Overton, Ward Fleri, Bjoern Peters:
  Semantic Modeling for Accelerated Immune Epitope Database (IEDB) Biocuration. K-CAP Workshops 2017: 7-12
• 2016
• 
  Randi Vita, James A. Overton, Emily Seymour, John Sidney, Jim Kaufman, Rebecca L. Tallmadge, Shirley Ellis, John Hammond, Geoff W. Butcher, Alessandro Sette, Bjoern Peters:
  An ontology for major histocompatibility restriction. J. Biomed. Semant. 7: 1 (2016)
• 2015
• 
  Randi Vita, James A. Overton, Jason A. Greenbaum, Julia V. Ponomarenko, Jason D. Clark, Jason R. Cantrell, Daniel K. Wheeler, Joseph L. Gabbard, Deborah Hix, Alessandro Sette, Bjoern Peters:
  The immune epitope database (IEDB) 3.0. Nucleic Acids Res. 43(Database-Issue): 405-412 (2015)
• 2013
• 
  Randi Vita, James A. Overton, Jason Greenbaum, Alessandro Sette, Björn Peters:
  Query enhancement through the practical application of ontology: the IEDB and OBI. J. Biomed. Semant. 4(S-1): S6 (2013)
• 
  James A. Overton, Randi Vita, Jason Greenbaum, Heiko Dietze, Alessandro Sette, Bjoern Peters:
  A Taxonomy for Immunologists. ICBO 2013: 124
• 2010
• 
  Randi Vita, Laura Zarebski, Jason Greenbaum, Hussein Emami, Ilka Hoof, Nima Salimi, Rohini Damle, Alessandro Sette, Björn Peters:
  The Immune Epitope Database 2.0. Nucleic Acids Res. 38(Database-Issue): 854-862 (2010)
• 2006
• 
  Randi Vita, Kerrie Vaughan, Laura Zarebski, Nima Salimi, Ward Fleri, Howard Grey, Muthu Sathiamurthy, John Mokili, Huynh-Hoa Bui, Philip E. Bourne, Julia V. Ponomarenko, Romulo de Castro Jr., Russell K. Chan, John Sidney, Stephen S. Wilson, Scott Stewart, Scott Way, Björn Peters, Alessandro Sette:
  Curation of complex, context-dependent immunological data. BMC Bioinform. 7: 341 (2006)
• 
  Nima Salimi, Randi Vita:
  The Biocurator: Connecting and Enhancing Scientific Data. PLoS Comput. Biol. 2(10) (2006)