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Publication search results
found 46 matches
- 2022
- Ambuj Kumar, Pranav M. Khade, Karin S. Dorman
, Robert L. Jernigan
:
Coarse-graining protein structures into their dynamic communities with DCI, a dynamic community identifier. Bioinform. 38(10): 2727-2733 (2022) - Robert J. Loughnan
, Alexey A. Shadrin, Oleksandr Frei
, Dennis van der Meer, Weiqi Zhao, Clare E. Palmer, Wesley K. Thompson, Carolina Makowski, Terry L. Jernigan
, Ole A. Andreassen
, Chun Chieh Fan
, Anders M. Dale
:
Generalization of cortical MOSTest genome-wide associations within and across samples. NeuroImage 263: 119632 (2022) - 2021
- Sayane Shome
, Kannan Sankar, Robert L. Jernigan
:
Simulated Drug Efflux for the AbgT Family of Membrane Transporters. J. Chem. Inf. Model. 61(11): 5673-5681 (2021) - Alexey A. Shadrin, Tobias Kaufmann
, Dennis van der Meer, Clare E. Palmer, Carolina Makowski, Robert J. Loughnan, Terry L. Jernigan, Tyler M. Seibert, Donald J. Hagler, Olav B. Smeland, Ehsan Motazedi
, Yunhan Chu, Aihua Lin, Weiqiu Cheng
, Guy Hindley, Wesley K. Thompson, Chun Chieh Fan, Dominic Holland, Lars T. Westlye, Oleksandr Frei, Ole A. Andreassen, Anders M. Dale:
Vertex-wise multivariate genome-wide association study identifies 780 unique genetic loci associated with cortical morphology. NeuroImage 244: 118603 (2021) - Eshel Faraggi, Robert L. Jernigan, Andrzej Kloczkowski:
A Hybrid Levenberg-Marquardt Algorithm on a Recursive Neural Network for Scoring Protein Models. Artificial Neural Networks, 3rd Edition 2021: 307-316 - 2019
- Eshel Faraggi
, A. Keith Dunker, Robert L. Jernigan, Andrzej Kloczkowski:
Entropy, Fluctuations, and Disordered Proteins. Entropy 21(8): 764 (2019) - Michael T. Zimmermann
, Fadi Towfic, Robert L. Jernigan, Andrzej Kloczkowski:
Characteristics of Protein Fold Space Exhibits Close Dependence on Domain Usage. IWBBIO (1) 2019: 356-369 - 2016
- Sumudu P. Leelananda, Andrzej Kloczkowski, Robert L. Jernigan:
Fold-specific sequence scoring improves protein sequence matching. BMC Bioinform. 17: 328 (2016) - Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski:
Predicting Designability of Small Proteins from Graph Features of Contact Maps. J. Comput. Biol. 23(5): 400-411 (2016) - Nikita Chopra, Thomas E. Wales, Raji E. Joseph, Scott E. Boyken
, John R. Engen
, Robert L. Jernigan, Amy H. Andreotti:
Dynamic Allostery Mediated by a Conserved Tryptophan in the Tec Family Kinases. PLoS Comput. Biol. 12(3) (2016) - Drena Dobbs, Steven E. Brenner, Vasant G. Honavar, Robert L. Jernigan, Alain Laederach, Quaid Morris:
Session Introduction. PSB 2016: 429-432 - 2015
- Hyuntae Na, Robert L. Jernigan, Guang Song:
Bridging between NMA and Elastic Network Models: Preserving All-Atom Accuracy in Coarse-Grained Models. PLoS Comput. Biol. 11(10) (2015) - Yuanyuan Huang, Kejue Jia
, Robert L. Jernigan, Zhijun Wu:
PRESS-PLOT: An Online Server for Protein Structural Analysis and Evaluation with Residue-level Virtual Angle Correlation Plots. ISBRA 2015: 150-161 - Sumudu P. Leelananda, Robert L. Jernigan, Andrzej Kloczkowski:
Exploration of Designability of Proteins Using Graph Features of Contact Maps: Beyond Lattice Models. RECOMB 2015: 188-201 - 2014
- Kannan Sankar
, Rasna R. Walia
, Carla M. Mann, Robert L. Jernigan, Vasant G. Honavar
, Drena Dobbs
:
An analysis of conformational changes upon RNA-protein binding. BCB 2014: 592-593 - 2012
- Michael T. Zimmermann
, Robert L. Jernigan:
Protein Loop Dynamics Are Complex and Depend on the Motions of the Whole Protein. Entropy 14(4): 687-700 (2012) - Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu:
P.R.E.S.S. - an R-package for Exploring Residual-Level protein Structural Statistics. J. Bioinform. Comput. Biol. 10(3) (2012) - Brittany Burton, Michael T. Zimmermann
, Robert L. Jernigan, Yongmei Wang
:
A Computational Investigation on the Connection between Dynamics Properties of Ribosomal Proteins and Ribosome Assembly. PLoS Comput. Biol. 8(5) (2012) - 2011
- Michael T. Zimmermann
, Andrzej Kloczkowski, Robert L. Jernigan:
MAVEN: Motion Analysis and Visualization of Elastic Networks and Structural Ensembles. BMC Bioinform. 12: 264 (2011) - Di Wu, Stephen Smith, Hannah Mahan, Robert L. Jernigan, Zhijun Wu:
Analysis of protein dynamics using local-DME calculations. Int. J. Bioinform. Res. Appl. 7(2): 146-161 (2011) - Yuanyuan Huang, Steve Bonett, Andrzej Kloczkowski, Robert L. Jernigan, Zhijun Wu:
P.R.E.S.S. - An R-package for exploring residual-level protein structural statistics. BIBM Workshops 2011: 382-389 - Juan Luis Fernández Martínez
, Esperanza García Gonzalo
, Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski:
Particle Swarm Optimization: A Powerful Family of Stochastic Optimizers. Analysis, Design and Application to Inverse Modelling. ICSI (1) 2011: 1-8 - 2010
- Yaping Feng, Andrzej Kloczkowski, Robert L. Jernigan:
Potentials 'R'Us web-server for protein energy estimations with coarse-grained knowledge-based potentials. BMC Bioinform. 11: 92 (2010) - William S. Kremen
, Robert C. O'Brien
, Matthew S. Panizzon, Elizabeth Prom-Wormley
, Lindon J. Eaves, Seth A. Eisen
, Lisa T. Eyler, Richard L. Hauger, Christine Fennema-Notestine
, Bruce Fischl, Michael D. Grant, Dirk H. Hellhammer, Amy J. Jak, Kristen C. Jacobson, Terry L. Jernigan, Sonia J. Lupien, Michael J. Lyons
, Sally P. Mendoza, Michael C. Neale, Larry J. Seidman, Heidi W. Thermenos, Ming T. Tsuang, Anders M. Dale, Carol E. Franz
:
Salivary cortisol and prefrontal cortical thickness in middle-aged men: A twin study. NeuroImage 53(3): 1093-1102 (2010) - Ataur R. Katebi, Pawel Gniewek, Michael T. Zimmermann, Saras Saraswathi, Zhenming Gong, Christopher K. Tuggle, Andrzej Kloczkowski, Robert L. Jernigan:
Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos. BCB 2010: 653-655 - Michael T. Zimmermann
, Aris Skliros, Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan:
Immunoglobulin functional motions and their effects on the complementarity determining regions. BCB 2010: 621-626 - Saras Saraswathi, Robert L. Jernigan, Andrzej Kloczkowski, Andrzej Kolinski:
Protein Secondary Structure Prediction using Knowledge-based Potentials. IJCCI (ICFC-ICNC) 2010: 370-375 - Saras Saraswathi, Andrzej Kloczkowski, Robert L. Jernigan:
An Extreme Learning Machine Classifier for Prediction of Relative Solvent Accessibility in Proteins. IJCCI (ICFC-ICNC) 2010: 364-369 - 2009
- Feng Cui, Kriti Mukhopadhyay, Won-Bin Young
, Robert L. Jernigan, Zhijun Wu:
Refinement of under-determined loops of Human Prion Protein by database-derived distance constraints. Int. J. Data Min. Bioinform. 3(4): 454-468 (2009) - Xiaoyong Sun, Di Wu, Robert L. Jernigan, Zhijun Wu:
PRTAD: A database for protein residue torsion angle distributions. Int. J. Data Min. Bioinform. 3(4): 469-482 (2009)
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