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Publication search results
found 71 matches
- 2024
- Tianhao Wang, Jianbo Tong, Xing Zhang, Zhe Wang, Lei Xu, Peichen Pan, Tingjun Hou:
Structure-based virtual screening of novel USP5 inhibitors targeting the zinc finger ubiquitin-binding domain. Comput. Biol. Medicine 174: 108397 (2024) - Xing Zhang, Jianbo Tong, Tianhao Wang, Tianyue Wang, Lei Xu, Zhe Wang, Tingjun Hou, Peichen Pan:
Dissecting the role of ALK double mutations in drug resistance to lorlatinib with in-depth theoretical modeling and analysis. Comput. Biol. Medicine 169: 107815 (2024) - Haolun Wang, Tingjun Xu, Dragan Pamucar, Xuxiang Li, Liangqing Feng:
A Lance Distance-Based MAIRCA Method for q-Rung Orthopair Fuzzy MCDM with Completely Unknown Weight Information. Informatica 35(1): 179-202 (2024) - Tingjun Xu, Wenxing Gao, Lixin Zhu, Wanning Chen, Chaoqun Niu, Wenjing Yin, Liangxiao Ma, Xinyue Zhu, Yunchao Ling, Sheng Gao, Lei Liu, Na Jiao, Weiming Chen, Guoqing Zhang, Ruixin Zhu, Dingfeng Wu:
NAFLDkb: A Knowledge Base and Platform for Drug Development against Nonalcoholic Fatty Liver Disease. J. Chem. Inf. Model. 64(7): 2817-2828 (2024) - Huifeng Zhao, Dejun Jiang, Chao Shen, Jintu Zhang, Xujun Zhang, Xiaorui Wang, Dou Nie, Tingjun Hou, Yu Kang:
Comprehensive Evaluation of 10 Docking Programs on a Diverse Set of Protein-Cyclic Peptide Complexes. J. Chem. Inf. Model. 64(6): 2112-2124 (2024) - Tingjun Ma, Changyin Zhou, Xuezhou Yan:
Parameter Selection of Robust Weighted SCAD Model Under Density Power Divergence. CACML 2024: 376-383 - Yiheng Zhu, Zitai Kong, Jialu Wu, Weize Liu, Yuqiang Han, Mingze Yin, Hongxia Xu, Chang-Yu Hsieh, Tingjun Hou:
Generative AI for Controllable Protein Sequence Design: A Survey. CoRR abs/2402.10516 (2024) - Odin Zhang, Yufei Huang, Shichen Cheng, Mengyao Yu, Xujun Zhang, Haitao Lin, Yundian Zeng, Mingyang Wang, Zhenxing Wu, Huifeng Zhao, Zaixi Zhang, Chenqing Hua, Yu Kang, Sunliang Cui, Peichen Pan, Chang-Yu Hsieh, Tingjun Hou:
Deep Geometry Handling and Fragment-wise Molecular 3D Graph Generation. CoRR abs/2404.00014 (2024) - 2023
- Haolun Wang, Tingjun Xu, Liangqing Feng, Tahir Mahmood, Kifayat Ullah:
Aczel-Alsina Hamy Mean Aggregation Operators in T-Spherical Fuzzy Multi-Criteria Decision-Making. Axioms 12(2): 224 (2023) - Shukai Gu, Chao Shen, Jiahui Yu, Hong Zhao, Huanxiang Liu, Liwei Liu, Rong Sheng, Lei Xu, Zhe Wang, Tingjun Hou, Yu Kang:
Can molecular dynamics simulations improve predictions of protein-ligand binding affinity with machine learning? Briefings Bioinform. 24(2) (2023) - Lingling Wang, Lei Xu, Zhe Wang, Tingjun Hou, Haiping Hao, Huiyong Sun:
Cooperation of structural motifs controls drug selectivity in cyclin-dependent kinases: an advanced theoretical analysis. Briefings Bioinform. 24(1) (2023) - Xujun Zhang, Chao Shen, Tianyue Wang, Yafeng Deng, Yu Kang, Dan Li, Tingjun Hou, Peichen Pan:
ML-PLIC: a web platform for characterizing protein-ligand interactions and developing machine learning-based scoring functions. Briefings Bioinform. 24(5) (2023) - Xujun Zhang, Chao Shen, Dejun Jiang, Jintu Zhang, Qing Ye, Lei Xu, Tingjun Hou, Peichen Pan, Yu Kang:
TB-IECS: an accurate machine learning-based scoring function for virtual screening. J. Cheminformatics 15(1): 63 (2023) - Jike Wang, Yundian Zeng, Huiyong Sun, Junmei Wang, Xiaorui Wang, Ruofan Jin, Mingyang Wang, Xujun Zhang, Dong-Sheng Cao, Xi Chen, Chang-Yu Hsieh, Tingjun Hou:
Molecular Generation with Reduced Labeling through Constraint Architecture. J. Chem. Inf. Model. 63(11): 3319-3327 (2023) - Kuerbannisha Amahong, Wei Zhang, Ying Zhou, Song Zhang, Jiayi Yin, Fengcheng Li, Hong-Quan Xu, Tian-Ci Yan, Zi-Xuan Yue, Yu-Hong Liu, Tingjun Hou, Yunqing Qiu, Lin Tao, Lianyi Han, Feng Zhu:
CovInter: interaction data between coronavirus RNAs and host proteins. Nucleic Acids Res. 51(D1): 546-556 (2023) - Gaoqi Weng, Xuanyan Cai, Dong-Sheng Cao, Hongyan Du, Chao Shen, Yafeng Deng, Qiaojun He, Bo Yang, Dan Li, Tingjun Hou:
PROTAC-DB 2.0: an updated database of PROTACs. Nucleic Acids Res. 51(D1): 1367-1372 (2023) - Odin Zhang, Jintu Zhang, Jieyu Jin, Xujun Zhang, Renling Hu, Chao Shen, Hanqun Cao, Hongyan Du, Yu Kang, Yafeng Deng, Furui Liu, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou:
ResGen is a pocket-aware 3D molecular generation model based on parallel multiscale modelling. Nat. Mac. Intell. 5(9): 1020-1030 (2023) - Xujun Zhang, Odin Zhang, Chao Shen, Wanglin Qu, Shicheng Chen, Hanqun Cao, Yu Kang, Zhe Wang, Ercheng Wang, Jintu Zhang, Yafeng Deng, Furui Liu, Tianyue Wang, Hongyan Du, Langcheng Wang, Peichen Pan, Guangyong Chen, Chang-Yu Hsieh, Tingjun Hou:
Efficient and accurate large library ligand docking with KarmaDock. Nat. Comput. Sci. 3(9): 789-804 (2023) - Xuezhou Yan, Changyin Zhou, Tingjun Ma:
Screening rules and information criteria-based analysis of gene expression data. AI2A 2023: 133-139 - Ting-Jung Chang, Ang Li, Fei Gao, Tuan Ta, Georgios Tziantzioulis, Yanghui Ou, Moyang Wang, Jinzheng Tu, Kaifeng Xu, Paul J. Jackson, August Ning, Grigory Chirkov, Marcelo Orenes-Vera, Shady Agwa, Xiaoyu Yan, Eric Tang, Jonathan Balkind, Christopher Batten, David Wentzlaff:
CIFER: A 12nm, 16mm2, 22-Core SoC with a 1541 LUT6/mm2 1.92 MOPS/LUT, Fully Synthesizable, CacheCoherent, Embedded FPGA. CICC 2023: 1-2 - Fei Gao, Ting-Jung Chang, Ang Li, Marcelo Orenes-Vera, Davide Giri, Paul J. Jackson, August Ning, Georgios Tziantzioulis, Joseph Zuckerman, Jinzheng Tu, Kaifeng Xu, Grigory Chirkov, Gabriele Tombesi, Jonathan Balkind, Margaret Martonosi, Luca P. Carloni, David Wentzlaff:
DECADES: A 67mm2, 1.46TOPS, 55 Giga Cache-Coherent 64-bit RISC-V Instructions per second, Heterogeneous Manycore SoC with 109 Tiles including Accelerators, Intelligent Storage, and eFPGA in 12nm FinFET. CICC 2023: 1-2 - 2022
- Mingyang Wang, Huiyong Sun, Jike Wang, Jinping Pang, Xin Chai, Lei Xu, Honglin Li, Dongsheng Cao, Tingjun Hou:
Comprehensive assessment of deep generative architectures for de novo drug design. Briefings Bioinform. 23(1) (2022) - Zhenxing Wu, Dejun Jiang, Jike Wang, Xujun Zhang, Hongyan Du, Lurong Pan, Chang-Yu Hsieh, Dongsheng Cao, Tingjun Hou:
Knowledge-based BERT: a method to extract molecular features like computational chemists. Briefings Bioinform. 23(3) (2022) - Gaoang Wang, Jiahui Yu, Hongyan Du, Chao Shen, Xujun Zhang, Yifei Liu, Yangyang Zhang, Dong-Sheng Cao, Peichen Pan, Tingjun Hou:
VGSC-DB: an online database of voltage-gated sodium channels. J. Cheminformatics 14(1): 75 (2022) - 2021
- Chao Shen, Ye Hu, Zhe Wang, Xujun Zhang, Jinping Pang, Gaoang Wang, Haiyang Zhong, Lei Xu, Dong-Sheng Cao, Tingjun Hou:
Beware of the generic machine learning-based scoring functions in structure-based virtual screening. Briefings Bioinform. 22(3) (2021) - Chao Shen, Ye Hu, Zhe Wang, Xujun Zhang, Haiyang Zhong, Gaoang Wang, Xiaojun Yao, Lei Xu, Dong-Sheng Cao, Tingjun Hou:
Can machine learning consistently improve the scoring power of classical scoring functions? Insights into the role of machine learning in scoring functions. Briefings Bioinform. 22(1): 497-514 (2021) - Chao Shen, Gaoqi Weng, Xujun Zhang, Elaine Lai-Han Leung, Xiaojun Yao, Jinping Pang, Xin Chai, Dan Li, Ercheng Wang, Dong-Sheng Cao, Tingjun Hou:
Accuracy or novelty: what can we gain from target-specific machine-learning-based scoring functions in virtual screening? Briefings Bioinform. 22(5) (2021) - Jike Wang, Dong-Sheng Cao, Cunchen Tang, Lei Xu, Qiaojun He, Bo Yang, Xi Chen, Huiyong Sun, Tingjun Hou:
DeepAtomicCharge: a new graph convolutional network-based architecture for accurate prediction of atomic charges. Briefings Bioinform. 22(3) (2021) - Qing Ye, Xin Chai, Dejun Jiang, Liu Yang, Chao Shen, Xujun Zhang, Dan Li, Dong-Sheng Cao, Tingjun Hou:
Identification of active molecules against Mycobacterium tuberculosis through machine learning. Briefings Bioinform. 22(5) (2021) - Chao Shen, Xueping Hu, Junbo Gao, Xujun Zhang, Haiyang Zhong, Zhe Wang, Lei Xu, Yu Kang, Dong-Sheng Cao, Tingjun Hou:
The impact of cross-docked poses on performance of machine learning classifier for protein-ligand binding pose prediction. J. Cheminformatics 13(1): 81 (2021)
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