• case-insensitive prefix search: default
  e.g., sig matches "SIGIR" as well as "signal"
• exact word search: append dollar sign ($) to word
  e.g., graph$ matches "graph", but not "graphics"
• boolean and: separate words by space
  e.g., codd model
• boolean or: connect words by pipe symbol (|)
  e.g., graph|network

Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.

found 17 matches

• 2022
• 
  Jakub Wojciechowski, Emirhan Tekoglu, Marlena Gasior-Glogowska, Virginie Coustou, Natalia Szulc, Monika Szefczyk, Marta Kopaczynska, Sven J. Saupe, Witold Dyrka:
  Exploring a diverse world of effector domains and amyloid signaling motifs in fungal NLR proteins. PLoS Comput. Biol. 18(12): 1010787 (2022)
• 2021
• 
  Witold Dyrka, Marlena Gasior-Glogowska, Monika Szefczyk, Natalia Szulc:
  Searching for universal model of amyloid signaling motifs using probabilistic context-free grammars. BMC Bioinform. 22(1): 222 (2021)
• 2020
• 
  Olgierd Unold, Mateusz Gabor, Witold Dyrka:
  Unsupervised Grammar Induction for Revealing the Internal Structure of Protein Sequence Motifs. AIME 2020: 299-309
• 2019
• 
  Olgierd Unold, Witold Dyrka, Wojciech Wieczorek:
  Proceedings of the 14th International Conference on Grammatical Inference, ICGI 2018, Wrocław, Poland, September 5-7, 2018. Proceedings of Machine Learning Research 93, PMLR 2019 [contents]
• 2018
• 
  Mathieu Hatt, Baptiste Laurent, Anouar Ouahabi, Hadi Fayad, Shan Tan, Laquan Li, Wei Lu, Vincent Jaouen, Clovis Tauber, Jakub Czakon, Filip Drapejkowski, Witold Dyrka, Sorina Camarasu-Pop, Frédéric Cervenansky, Pascal Girard, Tristan Glatard, Michaël Kain, Yao Yao, Christian Barillot, Assen Kirov, Dimitris Visvikis:
  The first MICCAI challenge on PET tumor segmentation. Medical Image Anal. 44: 177-195 (2018)
• 
  Mateusz Pyzik, François Coste, Witold Dyrka:
  How to measure the topological quality of protein parse trees? ICGI 2018: 118-138
• 
  Olgierd Unold, Witold Dyrka, Wojciech Wieczorek:
  International Conference on Grammatical Inference 2018: Preface. ICGI 2018: 1-2
• 
  Witold Dyrka, François Coste, Juliette Talibart:
  Estimating probabilistic context-free grammars for proteins using contact map constraints. CoRR abs/1805.08630 (2018)
• 2017
• 
  Bogumil Konopka, Marta Marciniak, Witold Dyrka:
  Quantiprot - a Python package for quantitative analysis of protein sequences. BMC Bioinform. 18(1): 339 (2017)
• 2016
• 
  Jakub Czakon, Filip Drapejkowski, Grzegorz Zurek, Piotr Giedziun, Jacek Zebrowski, Witold Dyrka:
  Machine learning methods for accurate delineation of tumors in PET images. CoRR abs/1610.09493 (2016)
• 
  Witold Dyrka, François Coste, Olgierd Unold, Lukasz Culer, Agnieszka Kaczmarek:
  How to measure the topological quality of protein grammars? CoRR abs/1611.10078 (2016)
• 2013
• 
  Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska:
  Probabilistic grammatical model for helix-helix contact site classification. Algorithms Mol. Biol. 8: 31 (2013)
• 2010
• 
  Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska:
  Towards 3D Modeling of Interacting TM Helix Pairs Based on Classification of Helix Pair Sequence. PRIB 2010: 62-73
• 2009
• 
  Witold Dyrka, Jean-Christophe Nebel:
  A stochastic context free grammar based framework for analysis of protein sequences. BMC Bioinform. 10: 323 (2009)
• 
  Bogumil Konopka, Witold Dyrka, Jean-Christophe Nebel, Malgorzata Kotulska:
  Accuracy in Predicting Secondary Structure of Ionic Channels. ICCCI (SCI Volume) 2009: 315-326
• 2008
• 
  Witold Dyrka, Andy T. Augousti, Malgorzata Kotulska:
  Ion flux through membrane channels - An enhanced algorithm for the Poisson-Nernst-Planck model. J. Comput. Chem. 29(12): 1876-1888 (2008)
• 2007
• 
  Witold Dyrka, Jean-Christophe Nebel:
  A probabilistic context-free grammar for the detection of binding sites from a protein sequence. BMC Syst. Biol. 1(S-1): P78 (2007)