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Publication search results
found 887 matches
- 2018
- Florian Schmidt, Markus List, Engin Cukuroglu, Sebastian Köhler, Jonathan Göke, Marcel H. Schulz:
An ontology-based method for assessing batch effect adjustment approaches in heterogeneous datasets. Bioinform. 34(17): i908-i916 (2018) - Min Li, Jie Yang, Fang-Xiang Wu, Yi Pan, Jianxin Wang:
DyNetViewer: a Cytoscape app for dynamic network construction, analysis and visualization. Bioinform. 34(9): 1597-1599 (2018) - Marwan Abdellah, Juan Hernando, Stefan Eilemann, Samuel Lapere, Nicolas Antille, Henry Markram, Felix Schürmann:
NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. Bioinform. 34(13): i574-i582 (2018) - Nanne Aben, Johan A. Westerhuis, Yipeng Song, Henk A. L. Kiers, Magali Michaut, Age K. Smilde, Lodewyk F. A. Wessels:
iTOP: inferring the topology of omics data. Bioinform. 34(17): i988-i996 (2018) - Richard H. Adams, Drew R. Schield, Daren C. Card, Andrew Corbin, Todd A. Castoe:
ThetaMater: Bayesian estimation of population size parameter θ from genomic data. Bioinform. 34(6): 1072-1073 (2018) - Badri Adhikari, Jie Hou, Jianlin Cheng:
DNCON2: improved protein contact prediction using two-level deep convolutional neural networks. Bioinform. 34(9): 1466-1472 (2018) - Bahman Afsari, Theresa Guo, Michael Considine, Liliana Florea, Luciane T. Kagohara, Genevieve L. Stein-O'Brien, Dylan Kelley, Emily Flam, Kristina D. Zambo, Patrick K. Ha, Donald Geman, Michael F. Ochs, Joseph A. Califano, Daria A. Gaykalova, Alexander V. Favorov, Elana J. Fertig:
Splice Expression Variation Analysis (SEVA) for inter-tumor heterogeneity of gene isoform usage in cancer. Bioinform. 34(11): 1859-1867 (2018) - Nima Aghaeepour, Erin F. Simonds, David J. H. F. Knapp, Robert V. Bruggner, Karen Sachs, Anthony Culos, Pier Federico Gherardini, Nikolay Samusik, Gabriela K. Fragiadakis, Sean Bendall, Brice Gaudilliere, Martin S. Angst, Connie J. Eaves, William A. Weiss, Wendy J. Fantl, Garry P. Nolan:
GateFinder: projection-based gating strategy optimization for flow and mass cytometry. Bioinform. 34(23): 4131-4133 (2018) - Ibrahim Ahmed, Peter J. Witbooi, Alan Christoffels:
Prediction of human-Bacillus anthracis protein-protein interactions using multi-layer neural network. Bioinform. 34(24): 4159-4164 (2018) - Soyeon Ahn, Ziqi Ke, Haris Vikalo:
Viral quasispecies reconstruction via tensor factorization with successive read removal. Bioinform. 34(13): i23-i31 (2018) - Tarmo Äijö, Christian L. Müller, Richard Bonneau:
Temporal probabilistic modeling of bacterial compositions derived from 16S rRNA sequencing. Bioinform. 34(3): 372-380 (2018) - Nicholas K. Akers, Eric E. Schadt, Bojan Losic:
STAR Chimeric Post for rapid detection of circular RNA and fusion transcripts. Bioinform. 34(14): 2364-2370 (2018) - Gregorio Alanis-Lobato, Pablo Mier, Miguel A. Andrade-Navarro:
The latent geometry of the human protein interaction network. Bioinform. 34(16): 2826-2834 (2018) - Levent Albayrak, Kamil Khanipov, George Golovko, Yuriy Fofanov:
Detection of multi-dimensional co-exclusion patterns in microbial communities. Bioinform. 34(21): 3695-3701 (2018) - Mehreen Ali, Suleiman A. Khan, Krister Wennerberg, Tero Aittokallio:
Global proteomics profiling improves drug sensitivity prediction: results from a multi-omics, pan-cancer modeling approach. Bioinform. 34(8): 1353-1362 (2018) - Fatemeh Almodaresi, Hirak Sarkar, Avi Srivastava, Rob Patro:
A space and time-efficient index for the compacted colored de Bruijn graph. Bioinform. 34(13): i169-i177 (2018) - Mona Alshahrani, Robert Hoehndorf:
Semantic Disease Gene Embeddings (SmuDGE): phenotype-based disease gene prioritization without phenotypes. Bioinform. 34(17): i901-i907 (2018) - Roberto Vera Alvarez, Shan Li, David Landsman, Ivan Ovcharenko:
SNPDelScore: combining multiple methods to score deleterious effects of noncoding mutations in the human genome. Bioinform. 34(2): 289-291 (2018) - David Amar, Amir Vizel, Carmit Levy, Ron Shamir:
ADEPTUS: a discovery tool for disease prediction, enrichment and network analysis based on profiles from many diseases. Bioinform. 34(11): 1959-1961 (2018) - Giovanna Ambrosini, Romain Groux, Philipp Bucher:
PWMScan: a fast tool for scanning entire genomes with a position-specific weight matrix. Bioinform. 34(14): 2483-2484 (2018) - Ali Amiryousefi, Jaakko Hyvönen, Peter Poczai:
IRscope: an online program to visualize the junction sites of chloroplast genomes. Bioinform. 34(17): 3030-3031 (2018) - Anastasia A. Anashkina, Yuri Kravatsky, Eugene N. Kuznetsov, Alexander A. Makarov, Alexei A. Adzhubei:
Meta-server for automatic analysis, scoring and ranking of docking models. Bioinform. 34(2): 297-299 (2018) - Massimo Andreatta, Thomas Trolle, Zhen Yan, Jason A. Greenbaum, Bjoern Peters, Morten Nielsen:
An automated benchmarking platform for MHC class II binding prediction methods. Bioinform. 34(9): 1522-1528 (2018) - Leonid Andronov, Jonathan Michalon, Khalid Ouararhni, Igor Orlov, Ali Hamiche, Jean-Luc Vonesch, Bruno P. Klaholz:
3DClusterViSu: 3D clustering analysis of super-resolution microscopy data by 3D Voronoi tessellations. Bioinform. 34(17): 3004-3012 (2018) - Andreas Andrusch, Piotr Wojtek Dabrowski, Jeanette Klenner, Simon H. Tausch, Claudia Kohl, Abdalla Osman, Bernhard Y. Renard, Andreas Nitsche:
PAIPline: pathogen identification in metagenomic and clinical next generation sequencing samples. Bioinform. 34(17): i715-i721 (2018) - Claudio Angione:
Integrating splice-isoform expression into genome-scale models characterizes breast cancer metabolism. Bioinform. 34(3): 494-501 (2018) - Anandashankar Anil, Rapolas Spalinskas, Örjan Åkerborg, Pelin Sahlén:
HiCapTools: a software suite for probe design and proximity detection for targeted chromosome conformation capture applications. Bioinform. 34(4): 675-677 (2018) - Mitra Ansariola, Molly Megraw, David Koslicki:
IndeCut evaluates performance of network motif discovery algorithms. Bioinform. 34(9): 1514-1521 (2018) - Danny Antaki, William M. Brandler, Jonathan Sebat:
SV2: accurate structural variation genotyping and de novo mutation detection from whole genomes. Bioinform. 34(10): 1774-1777 (2018) - Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk:
New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation. Bioinform. 34(8): 1304-1312 (2018)
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