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ORCIDGENSiPS 2009: Minneapolis, MN, USA
- 2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2009, Minneapolis, MN, USA, May 17-21, 2009. IEEE 2009
Poster Session: Identification and Classification of Genomic Structure
- Parameswaran Ramachandran, Wu-Sheng Lu, Andreas Antoniou:
Tuning technique for the location of hot spots in proteins using a bandpass notch digital filter. 1-4 - Sitanshu Sekhar Sahu
, Ganapati Panda:
A new approach for identification of hot spots in proteins using S-Transform filtering. 1-4 - Ranadip Pal, Aniruddha Datta, Edward R. Dougherty:
Quantification of data extraction noise in probabilistic Boolean Network modeling. 1-4 - Nilanjana Banerjee, Vinay Varadan, Sitharthan Kamalakaran, Angel Janevski:
Towards identification of thematic overlaps in gene sets. 1-4 - Chao Sima, Thang T. Vu, Ulisses M. Braga-Neto, Edward R. Dougherty:
Bolstered error estimator with feature selection. 1-2 - Babak Faryabi, Golnaz Vahedi, Jean-François Chamberland, Aniruddha Datta, Edward R. Dougherty:
Open-Loop Feedback Intervention: Control of gene regulatory networks with unmeasurable context. 1-2 - Le Yu, Stephen Marshall:
The partition of temporal gene expression sequence using discrete wavelet transform for modelling. 1-4 - Xiyi Hang, Wei Dai, Fang-Xiang Wu:
Subspace pursuit for gene profile classificaiton. 1-4 - Sara Nasser, Glen J. Weiss, Aarati R. Ranade, Seungchan Kim:
In-silico conditioning of microRNA to identify potential biomarkers from serum for pancreatic cancer. 1-4 - Aparna Gorthi, Ravi Jain, Nevenka Dimitrova:
Machine learning approach for classifying histone modifications. 1-4 - Maurizio Fiasché, Maria Cuzzola, Matteo Cacciola, Giuseppe Megali, Roberta Fedele, Pasquale Iacopino, Francesco Carlo Morabito:
A neural network model for early diagnosis of acute GVHD based on gene expression data. 1-4
Gene Regulatory Networks
- Xiaoning Qian, Edward R. Dougherty:
Control-compatible state reduction for Boolean networks. 1-2 - Golnaz Vahedi, Ilya Shmulevich, Wenbin Liu, Edward R. Dougherty:
Critical Boolean networks require minimal intervention rate. 1-2 - Zhouyi Xu, Xiaodong Cai:
Modified K-leap method for stochastic simulation of genetic networks with small number of molecules. 1-4 - David Correa Martins Jr., Evaldo Araújo de Oliveira, Paulo J. S. Silva, Ronaldo Fumio Hashimoto, Roberto Marcondes Cesar Jr.:
Revealing temporal genetic regulatory networks from steady-state distributions. 1-4 - Carlos H. A. Higa, Ronaldo Fumio Hashimoto, Roberto Hirata Jr., Nina S. T. Hirata, Carlos S. Santos:
Inference of gene regulatory network using temporal coefficient of determination obtained from ergodic Markov chains. 1-4
RNA Sequence Analysis & Noncoding RNA Prediction
- Gustavo Glusman:
Mining "junk" DNA to find hidden transcriptional gems. 1-4 - Juan Caballero, Gustavo Glusman:
Enhancing gene detection with computer generated intergenic regions. 1-4 - Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathews:
Joint stochastic sampling for RNA secondary structure prediction. 1-4 - Hui Liu, Dong Yue, Yidong Chen, Yufei Huang:
A comprehensive study of a SVM-based miRNA target prediction algorithm. 1-4
Linear Classification in Genomic Signal Processing
- Amin Zollanvari, Ulisses M. Braga-Neto, Edward R. Dougherty:
Sample size calculation from specified RMS of the resubstitution error for linear classifiers. 1-2 - Thang T. Vu, Ulisses M. Braga-Neto, Edward R. Dougherty:
Bagging degrades the performance of linear discriminant classifiers. 1-2 - Lingyan Sheng, Antonio Ortega, Roger Pique-Regi, Shahab Asgharzadeh:
Treelets as feature transformation tool for block diagonal linear discrimination. 1-4
Poster Session: Modeling and Analysis of Genomic Structure
- Ranadip Pal:
Analyzing steady state probability distributions of Context-sensitive Probabilistic Boolean Networks. 1-4 - Hossein Zare, Mostafa Kaveh, Arkady B. Khodursky:
Entropy-based analysis of ChIP-Sequencing data. 1-4 - Vibha Mane, Mónica F. Bugallo, Petar M. Djuric:
Stochastic modeling of second order reactions using a moment propagation method. 1-4 - Albert Oliveras-Vergés:
Maximum likelihood factor analysis in malaria cytokines analysis and modelling. 1-4 - Le Yu, Steven Watterson, Stephen Marshall, Peter Ghazal:
Inference of transition probabilities between the attractors in Boolean networks with perturbation. 1-4 - Ronaldo Fumio Hashimoto, Henrique Stagni, Carlos H. A. Higa:
Budding yeast cell cycle modeled by context-sensitive probabilistic Boolean network. 1-4 - Noushin Ghaffari, Ivan Ivanov, Edward R. Dougherty:
A CoD based reduction algorithm for Boolean and probabilistic Boolean networks. 1-2 - Fabrício Martins Lopes, David Correa Martins Jr., Roberto Marcondes Cesar Jr.:
Comparative study of GRNS inference methods based on feature selection by mutual information. 1-4 - Liming Wang, Dan Schonfeld:
Consistency in representation and transformation of genomic sequences. 1-4
Temporal Analysis of Genomic Data
- Mahsuni Gokdemir, Haris Vikalo:
A particle filtering algorithm for parameter estimation in real-time biosensor arrays. 1-4 - Raman Arora, Colin N. Dewey, William A. Sethares:
Reconstructing latent periods in genome sequences with insertions and deletions. 1-4 - Nidhal Bouaynaya, Dan Schonfeld, Radhakrishnan Nagarajan:
Analysis of temporal gene expression profiles using time-dependent MUSIC algorithm. 1-4
Plant genomic: Current trends and opportunities for signal processing
- Lin Wang, Fumiaki Katagiri, Jane Glazebrook:
Arabidopsis defense response against Pseudomonas syringae - Effects of major regulatory genes and the impact of coronatine. 1-4 - Viviane Tchonang Leuche, Ahmed H. Tewfik:
Computational analysis of functionally related genes in mouse response to Plasmodium chabaudi. 1-4 - Alain B. Tchagang, Hugo Bérubé, Ziying Liu, Sieu Phan, Fazel Famili, Youlian Pan:
Towards the reconstruction of Brassica napus seed development FA metabolism dynamic regulatory map. 1-4
Stochastic Modeling and Simulation of Genomic Data
- Abdullah K. Alqallaf, Ahmed H. Tewfik, Paula Krakowiak, Flora Tassone, Ryan Davis, Robin Hansen, Irva Hertz-Picciotto, Isaac Pessah, Jeff Gregg, Scott B. Selleck:
Identifying patterns of copy number variants in case-control studies of human genetic disorders. 1-4 - Abdullah K. Alqallaf, Ahmed H. Tewfik, Scott B. Selleck:
Genetic variation detection using maximum likelihood estimator. 1-4 - Sang Hyun Lee, Haris Vikalo, Sriram Vishwanath:
Message-passing for motif finding. 1-4 - Sahar M. Monfared, Vikram Krishnamurthy, Bruce Cornell:
Stochastic modeling and signal processing of nano-scale protein-based biosensors. 1-6 - Shreepriya Das, Haris Vikalo, Arjang Hassibi:
Stochastic modeling of reaction kinetics in biosensors using the Fokker Planck equation. 1-4
Data mining and machine learning applications in bioinformatics and systems biology
- Matthew A. Hibbs:
The effects of pre-processing and parameter choices on searches through large gene expression data collections. 1-4 - Jeremy Bellay, Benjamin VanderSluis, Yungil Kim, Sunayan Bandyopadhyay, Chad L. Myers:
Characterization of systems-level organization through mining large-scale genetic interaction networks. 1-4 - Gaurav Pandey, Gowtham Atluri, Gang Fang, Rohit Gupta, Michael S. Steinbach, Vipin Kumar:
Association analysis techniques for analyzing complex biological data sets. 1-4 - Thanh T. Ngo, Rui Kuang:
Partial profile alignment kernels for protein classification. 1-4 - Ze Tian, TaeHyun Hwang, Rui Kuang:
A hypergraph-based learning algorithm for classifying arraycgh data with spatial prior. 1-4
Static & Dynamic Disease Modeling
- Stephanie Tscherneck, Sarah Strunk, Christian Schmidt, Paul Hammer, Ronny Amberg, Chong Wang, Rainer Gillert, Antje Krause, Gabriele Petznick, Peter Beyerlein:
On the mutual information between interaction perplexity and function of proteins. 1-4 - Herman M. J. Sontrop, René van den Ham, Perry D. Moerland, Marcel J. T. Reinders, Wim F. J. Verhaegh:
A sensitivity analysis of microarray feature selection and classification under measurement noise. 1-4 - Christian Schmidt, Carsten Krumbiegel, Katja Waterstradt, Gabriele Petznick, Holger Schäfer, Kerstin Schnurr:
Expectation-maximization-estimation of mixture densities for Electron-Spin-Resonance-analysis of albumin. 1-4
Dynamic Pathway Modeling in Biological Systems: A Crossroad for Drug Discovery and Disease Mechanisms
- Sivaraman Balakrishnan, Öznur Tastan, Jaime G. Carbonell, Judith Klein-Seetharaman:
Communication interception of human signal transduction pathways by Human Immunodeficiency Virus-1. 1-4 - Smita Mohanty, Narayanaswamy Srinivasan:
How effective is the data on co-occurrence of domains in multi-domain proteins in prediction of protein-protein interactions? 1-4 - Urmi Sengupta, Sanchaita Ukil, Nevenka Dimitrova, Shipra Agrawal:
Identification of altered regulatory pathways in diabetes type II and complications through expression networks. 1-4 - Arun Miduthuri, Ting Wu, Haris Vikalo:
Target estimation in real-time polymerase chain reaction using sequential Monte Carlo. 1-4
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