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ORCIDAndrew R. Jones
- > Home > Persons > Andrew R. Jones
Publications
- 2022
[j19]Beatrice Amos, Cristina Aurrecoechea, Matthieu Barba
, Ana Barreto, Evelina Y. Basenko, Wojciech Bazant, Robert Belnap, Ann S. Blevins, Ulrike Böhme, John Brestelli, Brian P. Brunk, Mark J. Caddick, Danielle Callan, Lahcen I. Campbell, Mikkel B. Christensen, George K. Christophides, Kathryn Crouch, Kristina Davis, Jeremy D. DeBarry, Ryan Doherty, Yikun Duan, Michael Dunn, Dave Falke, Steve Fisher, Paul Flicek, Brett Fox, Bindu Gajria, Gloria I. Giraldo-Calderón, Omar S. Harb, Elizabeth Harper, Christiane Hertz-Fowler, Mark J. Hickman, Connor Howington, Sufen Hu, Jay C. Humphrey, John Iodice, Andrew R. Jones, John Judkins, Sarah A. Kelly, Jessica C. Kissinger, Dae Kun Kwon, Kristopher Lamoureux, Daniel Lawson, Wei Li, Kallie Lies, Disha Lodha, Jamie Long, Robert M. MacCallum, Gareth Maslen, Mary Ann McDowell, Jaroslaw Nabrzyski, David S. Roos, Samuel S. C. Rund, Stephanie wever Schulman, Achchuthan Shanmugasundram, Vasily Sitnik, Drew Spruill, David Starns, Christian J. Stoeckert Jr., Sheena Shah Tomko, Haiming Wang, Susanne Warrenfeltz, Robert Wieck, Paul A. Wilkinson, Lin Xu, Jie Zheng:
VEuPathDB: the eukaryotic pathogen, vector and host bioinformatics resource center. Nucleic Acids Res. 50(D1): 898-911 (2022)- [j18]Shengbo Wang, David García-Seisdedos, Ananth Prakash, Deepti Jaiswal Kundu, Andrew Collins, Nancy George, Silvie Fexova, Pablo A. Moreno, Irene Papatheodorou, Andrew R. Jones, Juan Antonio Vizcaíno:
Integrated view and comparative analysis of baseline protein expression in mouse and rat tissues. PLoS Comput. Biol. 18(6) (2022) - 2021
- [j17]Ashleigh C. Myall, Simon Perkins, David Rushton, Jonathan David, Phillippa Spencer, Andrew R. Jones, Philipp Antczak:
An OMICs-based meta-analysis to support infection state stratification. Bioinform. 37(16): 2347-2355 (2021) - 2020
- [j15]Faviel F. Gonzalez-Galarza, Antony McCabe, Eduardo José Melo dos Santos, James Jones, Louise Y. C. Takeshita, Nestor D. Ortega-Rivera, Glenda M. Del Cid-Pavon, Kerry Ramsbottom, Gurpreet S. Ghattaoraya, Ana Alfirevic, Derek Middleton, Andrew R. Jones:
Allele frequency net database (AFND) 2020 update: gold-standard data classification, open access genotype data and new query tools. Nucleic Acids Res. 48(Database-Issue): D783-D788 (2020) - 2016
- [j14]Gurpreet S. Ghattaoraya, Yenal Dundar, Faviel F. Gonzalez-Galarza, Maria Helena Thomaz Maia, Eduardo José Melo dos Santos, Andrea Luciana Soares da Silva, Antony McCabe, Derek Middleton, Ana Alfirevic, Rumona Dickson, Andrew R. Jones:
A web resource for mining HLA associations with adverse drug reactions: HLA-ADR. Database J. Biol. Databases Curation 2016 (2016) - [p4]Juan Antonio Vizcaíno, Simon Perkins, Andrew R. Jones, Eric W. Deutsch:
Chapter 11. Data Formats of the Proteomics Standards Initiative. Proteome Informatics 2016: 229-258 - 2015
- [j13]Eric W. Deutsch, Juan P. Albar, Pierre-Alain Binz, Martin Eisenacher, Andrew R. Jones, Gerhard Mayer, Gilbert S. Omenn, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob:
Development of data representation standards by the human proteome organization proteomics standards initiative. J. Am. Medical Informatics Assoc. 22(3): 495-506 (2015) - [j12]Faviel F. Gonzalez-Galarza, Louise Y. C. Takeshita, Eduardo José Melo dos Santos, Felicity Kempson, Maria Helena Thomaz Maia, Andrea Luciana Soares da Silva, André Luiz Teles e Silva, Gurpreet S. Ghattaoraya, Ana Alfirevic, Andrew R. Jones, Derek Middleton:
Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations. Nucleic Acids Res. 43(Database-Issue): 784-788 (2015) - 2014
- [j11]Achchuthan Shanmugasundram, Faviel F. Gonzalez-Galarza, Jonathan M. Wastling, Olga Vasieva, Andrew R. Jones:
An integrated approach to understand apicomplexan metabolism from their genomes. BMC Bioinform. 15(S-3): A3 (2014) - 2013
- [j10]Gerhard Mayer, Luisa Montecchi-Palazzi, David Ovelleiro, Andrew R. Jones, Pierre-Alain Binz, Eric W. Deutsch, Matthew Chambers, Marius Kallhardt, Fredrik Levander, James Shofstahl, Sandra E. Orchard, Juan Antonio Vizcaíno, Henning Hermjakob, Christian Stephan, Helmut E. Meyer, Martin Eisenacher:
The HUPO proteomics standards initiative- mass spectrometry controlled vocabulary. Database J. Biol. Databases Curation 2013 (2013) - [j9]Louise Y. C. Takeshita, Faviel F. Gonzalez-Galarza, Eduardo José Melo dos Santos, Maria Helena Thomaz Maia, Mushome M. Rahman, Syed M. S. Zain, Derek Middleton, Andrew R. Jones:
A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations. Database J. Biol. Databases Curation 2013 (2013) - [j8]Achchuthan Shanmugasundram, Faviel F. Gonzalez-Galarza, Jonathan M. Wastling, Olga Vasieva, Andrew R. Jones:
Library of Apicomplexan Metabolic Pathways: a manually curated database for metabolic pathways of apicomplexan parasites. Nucleic Acids Res. 41(Database-Issue): 706-713 (2013) - 2011
- [j7]Faviel F. Gonzalez-Galarza, Stephen Christmas, Derek Middleton, Andrew R. Jones:
Allele frequency net: a database and online repository for immune gene frequencies in worldwide populations. Nucleic Acids Res. 39(Database-Issue): 913-919 (2011) - 2010
- [p2]Andrew R. Jones, Simon J. Hubbard:
An Introduction to Proteome Bioinformatics. Proteome Bioinformatics 2010: 1-5 - [p1]Andrew R. Jones, Allyson L. Lister:
Managing Experimental Data Using FuGE. Proteome Bioinformatics 2010: 333-343 - [e1]Simon J. Hubbard, Andrew R. Jones:
Proteome Bioinformatics. Springer 2010, ISBN 978-1-60761-443-2 [contents] - 2009
- [j6]Yu Qian, Olga Tchuvatkina, Josef Spidlen, Peter Wilkinson, Maura Gasparetto, Andrew R. Jones, Frank J. Manion, Richard H. Scheuermann, Rafick-Pierre Sekaly, Ryan Remy Brinkman:
FuGEFlow: data model and markup language for flow cytometry. BMC Bioinform. 10 (2009) - 2008
- [j5]Khalid Belhajjame, Andrew R. Jones, Norman W. Paton:
A toolkit for capturing and sharing FuGE experiments. Bioinform. 24(22): 2647-2649 (2008) - 2007
- [j4]Neil Swainston, Jennifer A. Siepen, Andrew R. Jones, Sarah R. Hart, Henning Hermjakob, Philip Jones, Simon J. Hubbard:
Pride Wizard: generation of standards compliant quantitative proteomics data. BMC Syst. Biol. 1(S-1): P27 (2007) - 2006
- [c1]Lucas Zamboulis, Hao Fan, Khalid Belhajjame, Jennifer A. Siepen, Andrew R. Jones, Nigel J. Martin, Alexandra Poulovassilis, Simon J. Hubbard, Suzanne M. Embury, Norman W. Paton:
Data Access and Integration in the ISPIDER Proteomics Grid. DILS 2006: 3-18 - 2005
- [j3]Andrew R. Jones, Norman W. Paton:
An analysis of extensible modelling for functional genomics data. BMC Bioinform. 6: 235 (2005) - 2004
- [j2]Andrew R. Jones, Ela Hunt, Jonathan M. Wastling, Angel D. Pizarro, Christian J. Stoeckert Jr.:
An object model and database for functional genomics. Bioinform. 20(10): 1583-1590 (2004)
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