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ORCIDMarc A. Martí-Renom
- > Home > Persons > Marc A. Martí-Renom
Publications
- 2017
[j24]François Serra
, Davide Baù, Mike Goodstadt, David Castillo, Guillaume J. Filion, Marc A. Martí-Renom:
Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors. PLoS Comput. Biol. 13(7) (2017)- 2015
- [j23]Francisco Martínez-Jiménez, Marc A. Martí-Renom:
Ligand-Target Prediction by Structural Network Biology Using nAnnoLyze. PLoS Comput. Biol. 11(3) (2015) - 2013
- [j22]Carsten Kemena, Giovanni Bussotti, Emidio Capriotti, Marc A. Martí-Renom, Cédric Notredame:
Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package. Bioinform. 29(9): 1112-1119 (2013) - [j21]Francisco Martínez-Jiménez, George Papadatos, Lun Yang, Iain M. Wallace, Vinod Kumar, Ursula Pieper, Andrej Sali, James R. Brown, John P. Overington, Marc A. Martí-Renom:
Target Prediction for an Open Access Set of Compounds Active against Mycobacterium tuberculosis. PLoS Comput. Biol. 9(10) (2013) - 2011
- [j20]Emidio Capriotti, Tomás Norambuena, Marc A. Martí-Renom, Francisco Melo:
All-atom knowledge-based potential for RNA structure prediction and assessment. Bioinform. 27(8): 1086-1093 (2011) - 2010
- [j18]Emidio Capriotti, Marc A. Martí-Renom:
Quantifying the relationship between sequence and three-dimensional structure conservation in RNA. BMC Bioinform. 11: 322 (2010) - 2009
- [j17]Oriol Fornes, Ramon Aragues, Jordi Espadaler, Marc A. Martí-Renom, Andrej Sali, Baldo Oliva:
ModLink+: improving fold recognition by using protein-protein interactions. Bioinform. 25(12): 1506-1512 (2009) - [j16]Ursula Pieper, Narayanan Eswar, Ben M. Webb, David Eramian, Libusha Kelly, David T. Barkan, Hannah Carter, Parminder Mankoo, Rachel Karchin, Marc A. Martí-Renom, Fred P. Davis, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 37(Database-Issue): 347-354 (2009) - [j15]Emidio Capriotti, Marc A. Martí-Renom:
SARA: a server for function annotation of RNA structures. Nucleic Acids Res. 37(Web-Server-Issue): 260-265 (2009) - 2008
- [j14]Jordi Espadaler, Narayanan Eswar, Enrique Querol, Francesc X. Avilés, Andrej Sali, Marc A. Martí-Renom, Baldomero Oliva:
Prediction of enzyme function by combining sequence similarity and protein interactions. BMC Bioinform. 9 (2008) - [c1]Emidio Capriotti, Marc A. Martí-Renom:
RNA structure alignment by a unit-vector approach. ECCB 2008: 112-118 - 2007
- [j13]Marc A. Martí-Renom, Andrea Rossi, Fátima Al-Shahrour, Fred P. Davis, Ursula Pieper, Joaquín Dopazo, Andrej Sali:
The AnnoLite and AnnoLyze programs for comparative annotation of protein structures. BMC Bioinform. 8(S-4) (2007) - [j12]Marc A. Martí-Renom, Ursula Pieper, Mallur S. Madhusudhan, Andrea Rossi, Narayanan Eswar, Fred P. Davis, Fátima Al-Shahrour, Joaquín Dopazo, Andrej Sali:
DBAli tools: mining the protein structure space. Nucleic Acids Res. 35(Web-Server-Issue): 393-397 (2007) - [j11]Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A. Martí-Renom, Baldo Oliva:
Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions. PLoS Comput. Biol. 3(9) (2007) - 2006
- [j10]Ursula Pieper, Narayanan Eswar, Fred P. Davis, Hannes Braberg, Mallur S. Madhusudhan, Andrea Rossi, Marc A. Martí-Renom, Rachel Karchin, Ben M. Webb, David Eramian, Min-Yi Shen, Libusha Kelly, Francisco Melo, Andrej Sali:
MODBASE: a database of annotated comparative protein structure models and associated resources. Nucleic Acids Res. 34(Database-Issue): 291-295 (2006) - 2004
- [j9]Ursula Pieper, Narayanan Eswar, Hannes Braberg, Mallur S. Madhusudhan, Fred P. Davis, Ashley C. Stuart, Nebojsa Mirkovic, Andrea Rossi, Marc A. Martí-Renom, András Fiser, Ben M. Webb, Daniel M. Greenblatt, Conrad C. Huang, Thomas E. Ferrin, Andrej Sali:
MODBASE, a database of annotated comparative protein structure models, and associated resources. Nucleic Acids Res. 32(Database-Issue): 217-222 (2004) - 2003
- [j8]Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Linda McMahan, Andrej Sali:
ModView, visualization of multiple protein sequences and structures. Bioinform. 19(1): 165-166 (2003) - [j7]Ingrid Y. Y. Koh, Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, Narayanan Eswar, Osvaldo Graña, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: evaluation of protein structure prediction servers. Nucleic Acids Res. 31(13): 3311-3315 (2003) - [j6]Narayanan Eswar, Bino John, Nebojsa Mirkovic, András Fiser, Valentin A. Ilyin, Ursula Pieper, Ashley C. Stuart, Marc A. Martí-Renom, Mallur S. Madhusudhan, Bozidar Yerkovich, Andrej Sali:
Tools for comparative protein structure modeling and analysis. Nucleic Acids Res. 31(13): 3375-3380 (2003) - 2001
- [j5]Marc A. Martí-Renom, Valentin A. Ilyin, Andrej Sali:
DBAli: a database of protein structure alignments. Bioinform. 17(8): 746-747 (2001) - [j4]Volker A. Eyrich, Marc A. Martí-Renom, Dariusz Przybylski, Mallur S. Madhusudhan, András Fiser, Florencio Pazos, Alfonso Valencia, Andrej Sali, Burkhard Rost:
EVA: continuous automatic evaluation of protein structure prediction servers. Bioinform. 17(12): 1242-1243 (2001) - [j3]José M. Mas, Patrick Aloy, Marc A. Martí-Renom, Baldomero Oliva, R. de Llorens, Francesc X. Avilés, Enrique Querol:
Classification of protein disulphide-bridge topologies. J. Comput. Aided Mol. Des. 15(5): 477-487 (2001) - 2000
- [j2]Xavier Serra-Hartmann, Xavier Rebordosa, Jaume Piñol, Enrique Querol, Marc A. Martí-Renom:
ASAP: analysis of peptide composition. Bioinform. 16(12): 1153-1154 (2000) - [j1]Patrick Aloy, José M. Mas, Marc A. Martí-Renom, Enrique Querol, Francesc X. Avilés, Baldomero Oliva:
Refinement of modelled structures by knowledge-based energy profiles and secondary structure prediction: Application to the human procarboxypeptidase A2. J. Comput. Aided Mol. Des. 14(1): 83-92 (2000)
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