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ORCIDArzucan Özgür
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Publications
- 2024
[c54]Hasin Rehana, Benu Bansal, Nur Bengisu Çam, Jie Zheng, Yongqun He, Arzucan Özgür, Junguk Hur:
Nested Named Entity Recognition using Multilayer BERT-based Model. CLEF (Working Notes) 2024: 197-206- 2023
- [i20]Hasin Rehana, Nur Bengisu Çam, Mert Basmaci, Yongqun He, Arzucan Özgür
, Junguk Hur:
Evaluation of GPT and BERT-based models on identifying protein-protein interactions in biomedical text. CoRR abs/2303.17728 (2023) - 2019
- [j22]Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur:
Machine learning-based identification and rule-based normalization of adverse drug reactions in drug labels. BMC Bioinform. 20-S(21): 707 (2019) - 2018
- [j19]Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining and class effect analysis of adverse drug reactions associated with neuropathy-inducing drugs. J. Biomed. Semant. 9(1): 17:1-17:10 (2018) - 2017
- [j15]Junguk Hur, Arzucan Özgür, Yongqun He:
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks. J. Biomed. Semant. 8(1): 12:1-12:10 (2017) - [i1]Mert Tiftikci, Arzucan Özgür, Yongqun He, Junguk Hur:
Extracting Adverse Drug Reactions using Deep Learning and Dictionary Based Approaches. TAC 2017 - 2016
- [j14]Arzucan Özgür, Junguk Hur, Yongqun He:
The Interaction Network Ontology-supported modeling and mining of complex interactions represented with multiple keywords in biomedical literature. BioData Min. 9: 41:1-41:17 (2016) - [c24]Arzucan Özgür, Junguk Hur, Zuoshuang Xiang, Edison Ong, Dragomir R. Radev, Yongqun He:
Ignet: A Centrality and INO-based Web System for Analyzing and Visualizing Literature-mined Networks. ICBO/BioCreative 2016 - 2015
- [j10]Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang:
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations. Bioinform. 31(18): 3035-3042 (2015) - [j9]Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He:
Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions. J. Biomed. Semant. 6: 2 (2015) - [c18]Arzucan Özgür, Junguk Hur, Yongqun He:
Extension of the Interaction Network Ontology for Literature Mining of Gene-gene Interaction Networks from Sentences with Multiple Interaction Keywords. BDM2I@ISWC 2015 - 2012
- [j5]Junguk Hur, Arzucan Özgür, Zuoshuang Xiang, Yongqun He:
Identification of fever and vaccine-associated gene interaction networks using ontology-based literature mining. J. Biomed. Semant. 3: 18 (2012)
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