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Sriram P. Chockalingam
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Journal Articles
- 2023
- [j7]Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru:
A Parallel Framework for Constraint-Based Bayesian Network Learning via Markov Blanket Discovery. IEEE Trans. Parallel Distributed Syst. 34(6): 1699-1715 (2023) - 2022
- [j6]Maneesha Aluru, Harsh Shrivastava, Sriram P. Chockalingam, Shruti Shivakumar, Srinivas Aluru:
EnGRaiN: a supervised ensemble learning method for recovery of large-scale gene regulatory networks. Bioinform. 38(5): 1312-1319 (2022) - 2020
- [j5]Sriram P. Chockalingam, Jodh Pannu, Sahar Hooshmand, Sharma V. Thankachan, Srinivas Aluru:
An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction. BMC Bioinform. 21-S(6): 404 (2020) - [j4]Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru:
Sequential and parallel algorithms for all-pair k-mismatch maximal common substrings. J. Parallel Distributed Comput. 144: 68-79 (2020) - 2017
- [j3]Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru:
A greedy alignment-free distance estimator for phylogenetic inference. BMC Bioinform. 18(8): 238:1-238:8 (2017) - 2016
- [j2]Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Alberto Apostolico, Srinivas Aluru:
ALFRED: A Practical Method for Alignment-Free Distance Computation. J. Comput. Biol. 23(6): 452-460 (2016) - 2013
- [j1]Xiao Yang, Sriram P. Chockalingam, Srinivas Aluru:
A survey of error-correction methods for next-generation sequencing. Briefings Bioinform. 14(1): 56-66 (2013)
Conference and Workshop Papers
- 2021
- [c16]Ankit Srivastava, Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru:
Parallel construction of module networks. SC 2021: 26 - 2020
- [c15]Ankit Srivastava, Sriram P. Chockalingam, Srinivas Aluru:
A parallel framework for constraint-based bayesian network learning via markov blanket discovery. SC 2020: 7 - 2018
- [c14]Jodh Pannu, Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru:
An Alignment-free Heuristic for Fast Sequence Comparisons with Applications to Phylogeny Reconstruction. BCB 2018: 540 - [c13]Md. Vasimuddin, Sriram P. Chockalingam, Srinivas Aluru:
A Parallel Algorithm for Bayesian Network Inference Using Arithmetic Circuits. IPDPS 2018: 34-43 - [c12]Sharma V. Thankachan, Chaitanya Aluru, Sriram P. Chockalingam, Srinivas Aluru:
Algorithmic Framework for Approximate Matching Under Bounded Edits with Applications to Sequence Analysis. RECOMB 2018: 211-224 - 2017
- [c11]Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru:
Distributed Memory Partitioning of High-Throughput Sequencing Datasets for Enabling Parallel Genomics Analyses. BCB 2017: 417-424 - [c10]Sriram P. Chockalingam, Maneesha Aluru, Hongqing Guo, Yanhai Yin, Srinivas Aluru:
Reverse Engineering Gene Networks: A Comparative Study at Genome-scale. BCB 2017: 480-490 - [c9]Rahul Nihalani, Sriram P. Chockalingam, Shaowei Zhu, Vijay V. Vazirani, Srinivas Aluru:
Probabilistic estimation of overlap graphs for large sequence datasets. BIBM 2017: 247-252 - 2016
- [c8]Sharma V. Thankachan, Sriram P. Chockalingam, Srinivas Aluru:
An Efficient Algorithm for Finding All Pairs k-Mismatch Maximal Common Substrings. ISBRA 2016: 3-14 - [c7]Sriram P. Chockalingam, Sharma V. Thankachan, Srinivas Aluru:
A parallel algorithm for finding all pairs k-mismatch maximal common substrings. SC 2016: 784-794 - 2015
- [c6]Nagakishore Jammula, Sriram P. Chockalingam, Srinivas Aluru:
Parallel Read Error Correction for Big Genomic Datasets. HiPC 2015: 446-455 - [c5]Sriram P. Chockalingam, Maneesha Aluru, Srinivas Aluru:
Information Theory Based Genome-Scale Gene Networks Construction Using MapReduce. HiPC 2015: 464-473 - [c4]Inna Rytsareva, Seth Sims, Sriram P. Chockalingam, Srinivas Aluru, David S. Campo, Cansu Tetik, Sharma V. Thankachan, Yury Khudyakov, Yueli Zheng, Chirag Jain, Amanda Sue:
Efficient detection of viral transmission with threshold-based methods. ICCABS 2015: 1-6 - [c3]Sharma V. Thankachan, Sriram P. Chockalingam, Yongchao Liu, Ambujam Krishnan, Srinivas Aluru:
A greedy alignment-free distance estimator for phylogenetic inference (extended abstract). ICCABS 2015: 1 - 2014
- [c2]Sanchit Misra, Md. Vasimuddin, Kiran Pamnany, Sriram P. Chockalingam, Yong Dong, Min Xie, Maneesha R. Aluru, Srinivas Aluru:
Parallel Bayesian Network Structure Learning for Genome-Scale Gene Networks. SC 2014: 461-472 - 2012
- [c1]Ankit Shah, Sriram P. Chockalingam, Srinivas Aluru:
A Parallel Algorithm for Spectrum-based Short Read Error Correction. IPDPS 2012: 60-70
Coauthor Index
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