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ORCIDPierre Larmande
Person information
- affiliation: French National Research Institute of Research for Sustainable Development (IRD)
- affiliation (former): Institute of Computational Biology (IBC), Montpellier, France
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Books and Theses
- 2019
[b2]Pierre Larmande:
Intégration de données multi-échelles et extraction de connaissances en agronomie : exemples et perspectives. (Multi-scale Data Integration and Knowledge Extraction in Agronomy: Examples and Prospects). Montpellier 2 University, France, 2019- 2007
- [b1]Pierre Larmande:
Mutualiser et partager, un défi pour la génomique fonctionnelle végétale. (Data integration challenges for plant functional genomics). Montpellier 2 University, France, 2007
Journal Articles
- 2021
- [j12]Quan Do, Bich Hai Ho, Pierre Larmande
:
PyRice: a Python package for querying Oryza sativa databases. Bioinform. 37(7): 1037-1038 (2021) - 2019
- [j11]Armin Scheben, Chon-Kit Kenneth Chan, Locedie Mansueto, Ramil Mauleon, Pierre Larmande, Nickolai Alexandrov, Rod A. Wing, Kenneth L. McNally, Hadi Quesneville, David Edwards:
Progress in single-access information systems for wheat and rice crop improvement. Briefings Bioinform. 20(2): 565-571 (2019) - [j10]Yaw Nti-Addae, Dave Matthews, Victor Jun M. Ulat, Raza Syed, Guilhem Sempéré, Adrien Pétel, Jon Renner, Pierre Larmande, Valentin Guignon, Elizabeth Jones, Kelly Robbins:
Benchmarking database systems for Genomic Selection implementation. Database J. Biol. Databases Curation 2019: baz096 (2019) - [j9]Peter Selby, Rafael Abbeloos, Jan Erik Backlund, Martin Basterrechea Salido, Guillaume Bauchet, Omar E. Benites-Alfaro, Clayton L. Birkett, Viana C. Calaminos, Pierre Carceller, Guillaume Cornut, Bruno Vasques Costa, Jeremy D. Edwards, Richard Finkers, Star Yanxin Gao, Mehmood Ghaffar, Philip Glaser, Valentin Guignon, Puthick Hok, Andrzej Kilian, Patrick König, Jack Elendil B. Lagare, Matthias Lange, Marie-Angélique Laporte, Pierre Larmande, David S. LeBauer, David A Lyon, David F. Marshall, Dave Matthews, Iain Milne, Naymesh Mistry, Nicolas Morales, Lukas A. Mueller, Pascal Neveu, Evangelia Papoutsoglou, Brian Pearce, Ivan Perez-Masias, Cyril Pommier, Ricardo H. Ramirez-Gonzalez, Abhishek Rathore, Angel Manica Raquel, Sebastian Raubach, Trevor Rife, Kelly Robbins, Mathieu Rouard, Chaitanya Sarma, Uwe Scholz, Guilhem Sempéré, Paul D. Shaw, Reinhard Simon, Nahuel Soldevilla, Gordon Stephen, Qi Sun, Clarysabel Tovar, Grzegorz Uszynski, Maikel Verouden, The BrAPI consortium:
BrAPI - an application programming interface for plant breeding applications. Bioinform. 35(20): 4147-4155 (2019) - 2018
- [j8]Lisa C. Harper, Jacqueline D. Campbell, Ethalinda K. S. Cannon, Sook Jung, Monica Poelchau, Ramona L. Walls, Carson M. Andorf, Elizabeth Arnaud, Tanya Z. Berardini, Clayton L. Birkett, Steven B. Cannon, James D. Carson, Bradford Condon, Laurel Cooper, Nathan A. Dunn, Christine G. Elsik, Andrew D. Farmer, Stephen P. Ficklin, David M. Grant, Emily S. Grau, Nic Herndon, Zhi-Liang Hu, Jodi L. Humann, Pankaj Jaiswal, Clément Jonquet, Marie-Angélique Laporte, Pierre Larmande, Gerard R. Lazo, Fiona McCarthy, Naama Menda, Christopher J. Mungall, Monica C. Munoz-Torres, Sushma Naithani, Rex T. Nelson, Daureen Nesdill, Carissa A. Park, James M. Reecy, Leonore Reiser, Lacey-Anne Sanderson, Taner Z. Sen, Margaret Staton, Sabarinath Subramaniam, Marcela Karey Tello-Ruiz, Victor Unda, Deepak R. Unni, Liya Wang, Doreen Ware, Jill L. Wegrzyn, Jason Williams, Margaret Woodhouse, Jing Yu, Doreen Main:
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture. Database J. Biol. Databases Curation 2018: bay088 (2018) - [j7]Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Marie-Angélique Laporte, Mark A. Musen, Valeria Pesce, Pierre Larmande:
AgroPortal: A vocabulary and ontology repository for agronomy. Comput. Electron. Agric. 144: 126-143 (2018) - 2017
- [j6]Sarah Cohen Boulakia, Khalid Belhajjame, Olivier Collin, Jérôme Chopard, Christine Froidevaux, Alban Gaignard, Konrad Hinsen, Pierre Larmande, Yvan Le Bras, Frédéric Lemoine, Fabien Mareuil, Hervé Ménager, Christophe Pradal, Christophe Blanchet:
Scientific workflows for computational reproducibility in the life sciences: Status, challenges and opportunities. Future Gener. Comput. Syst. 75: 284-298 (2017) - 2016
- [j5]Gildas Tagny Ngompé, Aravind Venkatesan, Nordine El Hassouni, Manuel Ruiz, Pierre Larmande:
AgroLD APIAgroLD API. Une architecture orientée services pour l'extraction de connaissances dans la base de données liées AgroLD. Ingénierie des Systèmes d Inf. 21(5-6): 133-157 (2016) - 2013
- [j4]Julien Wollbrett, Pierre Larmande, Frédéric de Lamotte, Manuel Ruiz:
Clever generation of rich SPARQL queries from annotated relational schema: application to Semantic Web Service creation for biological databases. BMC Bioinform. 14: 126 (2013) - 2009
- [j3]Gaëtan Droc, Christophe Périn, Sébastien Fromentin, Pierre Larmande:
OryGenesDB 2008 update: database interoperability for functional genomics of rice. Nucleic Acids Res. 37(Database-Issue): 992-995 (2009) - 2008
- [j2]Pierre Larmande, Céline Gay, Mathias Lorieux, Christophe Périn, Matthieu Bouniol, Gaëtan Droc, Christophe Sallaud, Pascual Perez, Isabelle Barnola, Corinne Biderre-Petit, Jérôme Martin, Jean Benoît Morel, Alexander A. T. Johnson, Fabienne Bourgis, Alain Ghesquière, Manuel Ruiz, Brigitte Courtois, Emmanuel Guiderdoni:
Oryza Tag Line, a phenotypic mutant database for the Génoplante rice insertion line library. Nucleic Acids Res. 36(Database-Issue): 1022-1027 (2008) - 2006
- [j1]Gaëtan Droc, Manuel Ruiz, Pierre Larmande, Andy Pereira, P. Piffanelli, Jean Benoît Morel, Anne Dievart, Brigitte Courtois, Emmanuel Guiderdoni, Christophe Périn:
OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res. 34(Database-Issue): 736-740 (2006)
Conference and Workshop Papers
- 2023
- [c15]Bill Gates Happi Happi, Géraud Fokou Pelap, Danai Symeonidou, Pierre Larmande:
Tutoriel sur DLinker : Un outil rapide de découverte d'entités similaires entre deux graphes de connaissances. IC 2023: 185-186 - [c14]Pierre Larmande, Bertrand Pitollat, Ndomassi Tando, Yann Pomie, Bill Happi, Valentin Guignon, Manuel Ruiz:
AgroLD: a Knowledge Graph for the Plant Sciences. SWAT4HCLS 2023: 167-168 - 2022
- [c13]Bill Gates Happi Happi, Géraud Fokou Pelap, Danai Symeonidou, Pierre Larmande:
DLinker results for OAEI 2022. OM@ISWC 2022: 166-173 - 2021
- [c12]Pierre Larmande, Gildas Tagny Ngompé, Manuel Ruiz:
AgroLD : une base de connaissances pour l'étude du phénome des plantes cultivées. EGC 2021: 461-468 - [c11]Pierre Larmande, Konstantin Todorov:
AgroLD: A Knowledge Graph for the Plant Sciences. ISWC 2021: 496-510 - 2020
- [c10]Quan Do, Pierre Larmande:
Candidate gene prioritization using graph embedding. RIVF 2020: 1-6 - 2019
- [c9]Pierre Larmande, Gildas Tagny Ngompé, Manuel Ruiz:
AgroLD: un graphe de connaissances pour la caractérisation des mécanismes moléculaires complexes impactant le phénome des plantes. IC 2019: 217-218 - 2018
- [c8]Huy Do, Khoat Than, Pierre Larmande:
Evaluating Named-Entity Recognition Approaches in Plant Molecular Biology. MIWAI 2018: 219-225 - 2016
- [c7]Imène Chentli, Pierre Larmande, Konstantin Todorov:
Construction d'un gold standard pour des données agronomiques. IC 2016: 251-254 - [c6]Clément Jonquet, Anne Toulet, Elizabeth Arnaud, Sophie Aubin, Esther Dzalé Yeumo Kaboré, Vincent Emonet, John Graybeal, Mark A. Musen, Cyril Pommier, Pierre Larmande:
Reusing the NCBO BioPortal Technology for Agronomy to Build AgroPortal. ICBO/BioCreative 2016 - [c5]Stella Zevio, Nordine El Hassouni, Manuel Ruiz, Pierre Larmande:
AgroLD Indexing Tools with Ontological Annotations. SWAT4LS 2016 - [c4]Ngoc Luyên Lê, Anne Tireau, Aravind Venkatesan, Pascal Neveu, Pierre Larmande:
Development of a knowledge system for Big Data: Case study to plant phenotyping data. WIMS 2016: 27:1-27:9 - 2015
- [c3]Aravind Venkatesan, Nordine El Hassouni, Florian Philippe, Cyril Pommier, Hadi Quesneville, Manuel Ruiz, Pierre Larmande:
Exposing French Agronomic Resources as Linked Open Data. SWAT4LS 2015: 205-207 - 2012
- [c2]Julien Wollbrett, Pierre Larmande, Manuel Ruiz:
Semi-automatic Generation of Semantic Web Services for Relational Biological Databases. SWAT4LS 2012 - 2006
- [c1]Pierre Larmande, Christine Tranchant-Dubreuil, L. Regnier, Isabelle Mougenot, Thérèse Libourel:
Integration of Data Sources for Plant Genomics. ICEIS (1) 2006: 314-318
Coauthor Index
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