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ORCIDNucleic Acids Research, Volume 36
Volume 36, Number Database-Issue, January 2008
- Alex Bateman
:
Editorial. 1
- Michael Y. Galperin:
The Molecular Biology Database Collection: 2008 update. 2-4 - Guy Cochrane, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, James K. Bonfield, Lawrence Bower, Paul Browne, Matias Castro, Tony Cox, Fehmi Demiralp, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Mikyung Jang, Tamara Kulikova, Alberto Labarga, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Sheila Plaister, Stephen Robinson, Siamak Sobhany, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler, Tim J. P. Hubbard, Ewan Birney:
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. 5-12 - David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Michael Feolo, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, Oleg Khovayko, David Landsman, David J. Lipman, Thomas L. Madden, Donna R. Maglott, Vadim Miller, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Martin Shumway, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko:
Database resources of the National Center for Biotechnology Information. 13-21 - Hideaki Sugawara, Osamu Ogasawara, Kousaku Okubo, Takashi Gojobori, Yoshio Tateno:
DDBJ with new system and face. 22-24 - Dennis A. Benson, Ilene Karsch-Mizrachi, David J. Lipman, James Ostell, David L. Wheeler:
GenBank. 25-30 - Yu Zhou, Chen Lu, Qi-Jia Wu, Yu Wang, Zhi-Tao Sun, Jia-Cong Deng, Yi Zhang:
GISSD: Group I Intron Sequence and Structure Database. 31-37 - Carlos Lloréns, Ricardo Futami, Daniela Bezemer, Andrés Moya:
The Gypsy Database (GyDB) of mobile genetic elements. 38-46 - Asaf Levy, Noa Sela, Gil Ast:
TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates. 47-52 - Veenu Aishwarya, Prakash C. Sharma:
UgMicroSatdb: database for mining microsatellites from unigenes. 53-56 - Marco Mangone, Philip MacMenamin, Charles Zegar, Fabio Piano, Kristin C. Gunsalus:
UTRome.org: a platform for 3'UTR biology in C. elegans. 57-62 - Fabian Birzele, Robert Küffner, Franziska Meier, Florian Oefinger, Christian Potthast, Ralf Zimmer:
ProSAS: a database for analyzing alternative splicing in the context of protein structures. 63-68 - Amrita Pati, Ying Jin, Karsten Klage, Richard F. Helm, Lenwood S. Heath, Naren Ramakrishnan:
CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining. 69-76 - Takeshi Obayashi, Shinpei Hayashi, Masayuki Shibaoka, Motoshi Saeki, Hiroyuki Ohta, Kengo Kinoshita:
COXPRESdb: a database of coexpressed gene networks in mammals. 77-82 - Lei Bao, Mi Zhou, Yan Cui:
CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators. 83-87 - Derek Wilson, Varodom Charoensawan, Sarah K. Kummerfeld, Sarah A. Teichmann:
DBD--taxonomically broad transcription factor predictions: new content and functionality. 88-92 - Nicolas Sierro, Yuko Makita, Michiel J. L. de Hoon, Kenta Nakai:
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information. 93-96 - Hiroyuki Wakaguri, Riu Yamashita, Yutaka Suzuki, Sumio Sugano, Kenta Nakai:
DBTSS: database of transcription start sites, progress report 2008. 97-101 - Jan Christian Bryne, Eivind Valen, Man-Hung Eric Tang, Troels Torben Marstrand, Ole Winther, Isabelle da Piedade, Anders Krogh, Boris Lenhard, Albin Sandelin:
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update. 102-106 - Obi L. Griffith, Stephen B. Montgomery, Bridget Bernier, Bryan Chu, Katayoon Kasaian, Stein Aerts, Shaun Mahony, Monica C. Sleumer, Mikhail Bilenky, Maximilian Haeussler, Malachi Griffith, Steven M. Gallo, Belinda Giardine, Bart Hooghe, Peter Van Loo, Enrique Blanco, Amy Ticoll, Stuart Lithwick, Elodie Portales-Casamar, Ian J. Donaldson, Gordon Robertson, Claes Wadelius, Pieter J. De Bleser, Dominique Vlieghe, Marc S. Halfon, Wyeth W. Wasserman, Ross C. Hardison, Casey M. Bergman, Steven J. M. Jones:
ORegAnno: an open-access community-driven resource for regulatory annotation. 107-113 - Gang-Qing Hu, Xiaobin Zheng, Yi-Fan Yang, Philippe Ortet, Zhen-Su She, Huaiqiu Zhu:
ProTISA: a comprehensive resource for translation initiation site annotation in prokaryotic genomes. 114-119 - Socorro Gama-Castro, Verónica Jiménez-Jacinto, Martín Peralta-Gil, Alberto Santos-Zavaleta, Mónica I. Peñaloza-Spínola, Bruno Contreras-Moreira, Juan Segura-Salazar, Luis Muñiz-Rascado, Irma Martínez-Flores, Heladia Salgado, César Bonavides-Martínez, Cei Abreu-Goodger, Carlos Rodríguez Penagos, Juan Miranda-Ríos, Enrique Morett, Enrique Merino, Araceli M. Huerta, Luis Treviño-Quintanilla, Julio Collado-Vides:
RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. 120-124 - Barrett C. Foat, Ronald G. Tepper, Harmen J. Bussemaker:
TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors. 125-131 - Pedro T. Monteiro, Nuno D. Mendes, Miguel C. Teixeira, Sofia d'Orey, Sandra Tenreiro, Nuno P. Mira, Hélio Pais, Alexandre P. Francisco, Alexandra M. Carvalho, Artur B. Lourenço, Isabel Sá-Correia, Arlindo L. Oliveira, Ana T. Freitas:
YEASTRACT-DISCOVERER: new tools to improve the analysis of transcriptional regulatory associations in Saccharomyces cerevisiae. 132-136 - Anason S. Halees, Rashad El-Badrawi, Khalid S. A. Khabar:
ARED Organism: expansion of ARED reveals AU-rich element cluster variations between human and mouse. 137-140 - Oleg Kikin, Zachary Zappala, Lawrence D'Antonio, Paramjeet Singh Bagga:
GRSDB2 and GRS_UTRdb: databases of quadruplex forming G-rich sequences in pre-mRNAs and mRNAs. 141-148 - Doron Betel, Manda Wilson, Aaron Gabow, Debora S. Marks, Chris Sander:
The microRNA.org resource: targets and expression. 149-153 - Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright:
miRBase: tools for microRNA genomics. 154-158 - Seungyoon Nam, Bumjin Kim, Seokmin Shin, Sanghyuk Lee:
miRGator: an integrated system for functional annotation of microRNAs. 159-164 - Sheng-Da Hsu, Chia-Huei Chu, Ann-Ping Tsou, Shu-Jen Chen, Hua-Chien Chen, Paul Wei-Che Hsu, Yung-Hao Wong, Yi-Hsuan Chen, Gian-Hung Chen, Hsien-Da Huang:
miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes. 165-169 - Shunmin He, Changning Liu, Geir Skogerbø, Haitao Zhao, Jie Wang, Tao Liu, Baoyan Bai, Yi Zhao, Runsheng Chen:
NONCODE v2.0: decoding the non-coding. 170-172 - Sai Lakshmi Subramanian, Shipra Agrawal:
piRNABank: a web resource on classified and clustered Piwi-interacting RNAs. 173-177 - Dorota Piekna-Przybylska, Wayne A. Decatur, Maurille J. Fournier:
The 3D rRNA modification maps database: with interactive tools for ribosome analysis. 178-183 - Sung-Chou Li, Cheng-Kai Shiau, Wen-Chang Lin:
Vir-Mir db: prediction of viral microRNA candidate hairpins. 184-189 - The UniProt Consortium: The Universal Protein Resource (UniProt). 190-195
- Hans-Werner Mewes, Sabine Dietmann, Dmitrij Frishman, Richard Gregory, Gertrud Mannhaupt, Klaus F. X. Mayer, Martin Münsterkötter, Andreas Ruepp, Manuel Spannagl, Volker Stümpflen, Thomas Rattei:
MIPS: analysis and annotation of genome information in 2007. 196-201 - Shuichi Kawashima, Piotr Pokarowski, Maria Pokarowska, Andrzej Kolinski, Toshiaki Katayama, Minoru Kanehisa:
AAindex: amino acid index database, progress report 2008. 202-205 - Conan K. L. Wang, Quentin Kaas, Laurent Chiche, David J. Craik:
CyBase: a database of cyclic protein sequences and structures, with applications in protein discovery and engineering. 206-210 - Hua Cheng, Bong-Hyun Kim, Nick V. Grishin:
MALISAM: a database of structurally analogous motifs in proteins. 211-217 - Ganesan Pugalenthi, Ponnuthurai N. Suganthan, Ramanathan Sowdhamini, Saikat Chakrabarti:
MegaMotifBase: a database of structural motifs in protein families and superfamilies. 218-221 - David S. Wishart, David Arndt, Mark V. Berjanskii, Anchi Guo, Yi Shi, Savita Shrivastava, Jianjun Zhou, You Zhou, Guohui Lin:
PPT-DB: the protein property prediction and testing database. 222-229 - Josefine Sprenger, J. Lynn Fink, Seetha Karunaratne, Kelly Hanson, Nicholas A. Hamilton, Rohan D. Teasdale:
LOCATE: a mammalian protein subcellular localization database. 230-233 - Gábor E. Tusnády, Lajos Kalmár, István Simon:
TOPDB: topology data bank of transmembrane proteins. 234-239 - Francesca Diella, Cathryn M. Gould, Claudia Chica, Allegra Via, Toby J. Gibson:
Phospho.ELM: a database of phosphorylation sites - update 2008. 240-244 - Nicolas Hulo, Amos Bairoch, Virginie Bulliard, Lorenzo Cerutti, Béatrice A. Cuche, Edouard De Castro, Corinne Lachaize, Petra S. Langendijk-Genevaux, Christian J. A. Sigrist:
The 20 years of PROSITE. 245-249 - Lars Juhl Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork:
eggNOG: automated construction and annotation of orthologous groups of genes. 250-254 - Guohui Ding, Yan Sun, Hong Li, Zhen Wang, Haiwei Fan, Chuan Wang, Dan Yang, Yixue Li:
EPGD: a comprehensive web resource for integrating and displaying eukaryotic paralog/paralogon information. 255-262 - Ann-Charlotte Berglund, Erik Sjölund, Gabriel Östlund, Erik L. L. Sonnhammer:
InParanoid 6: eukaryotic ortholog clusters with inparalogs. 263-266 - Andreas Heger, Chris P. Ponting:
OPTIC: orthologous and paralogous transcripts in clades. 267-270 - Evgenia V. Kriventseva, Nazim Rahman, Octavio Espinosa, Evgeni M. Zdobnov:
OrthoDB: the hierarchical catalog of eukaryotic orthologs. 271-275 - Andreas Heger, Eija Korpelainen, Taavi Hupponen, Kimmo Mattila, Vesa Ollikainen, Liisa Holm:
PairsDB atlas of protein sequence space. 276-280 - Robert D. Finn, John G. Tate, Jaina Mistry, Penny C. Coggill, Stephen John Sammut, Hans-Rudolf Hotz, Goran Ceric, Kristoffer Forslund, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman:
The Pfam protein families database. 281-288 - Thomas Rattei, Patrick Tischler, Roland Arnold, Franz Hamberger, Jörg Krebs, Jan Krumsiek, Benedikt Wachinger, Volker Stümpflen, Hans-Werner Mewes:
SIMAP - structuring the network of protein similarities. 289-292 - Quan-Yuan He, Quan-Ze He, Xing-Can Deng, Lei Yao, Er Meng, Zhong-Hua Liu, Song-Ping Liang:
ATDB: a uni-database platform for animal toxins. 293-297 - Karla Gendler, Tara Paulsen, Carolyn Napoli:
ChromDB: The Chromatin Database. 298-302 - Jianwen Fang, Yinghua Dong, Nazila Salamat-Miller, C. Russell Middaugh:
DB-PABP: a database of polyanion-binding proteins. 303-306 - Charles J. Reedy, Margaret M. Elvekrog, Brian R. Gibney:
Development of a heme protein structure-electrochemical function database. 307-313 - Jérôme Gracy, Dung Le-Nguyen, Jean-Christophe Gelly, Quentin Kaas, Annie Heitz, Laurent Chiche:
KNOTTIN: the knottin or inhibitor cystine knot scaffold in 2007. 314-319 - Neil D. Rawlings, Fraser R. Morton, Chai Yin Kok, Jun Kong, Alan J. Barrett:
MEROPS: the peptidase database. 320-325 - Ségolène Caboche, Maude Pupin, Valérie Leclère, Arnaud Fontaine, Philippe Jacques, Gregory Kucherov:
NORINE: a database of nonribosomal peptides. 326-331 - Sergi Castellano, Vadim N. Gladyshev, Roderic Guigó, Marla J. Berry:
SelenoDB 1.0 : a database of selenoprotein genes, proteins and SECIS elements. 332-338 - Joshua D. Podlevsky, Christopher J. Bley, Rebecca V. Omana, Xiaodong Qi, Julian J.-L. Chen:
The Telomerase Database. 339-343 - Kirill Degtyarenko, Paula de Matos, Marcus Ennis, Janna Hastings, Martin Zbinden, Alan McNaught, Rafael Alcántara, Michael Darsow, Mickaël Guedj, Michael Ashburner:
ChEBI: a database and ontology for chemical entities of biological interest. 344-350 - Kathleen Petri Seiler, Gregory A. George, Mary Pat Happ, Nicole E. Bodycombe, Hyman A. Carrinski, Stephanie Norton, Steve Brudz, John P. Sullivan, Jeremy Muhlich, Martin Serrano, Paul Ferraiolo, Nicola J. Tolliday, Stuart L. Schreiber, Paul A. Clemons:
ChemBank: a small-molecule screening and cheminformatics resource database. 351-359 - François-Yves Dupradeau, Christine Cézard, Rodolphe Lelong, Élodie Stanislawiak, Julien Pêcher, Jean Charles Delepine, Piotr Cieplak:
R.E.DD.B.: A database for RESP and ESP atomic charges, and force field libraries. 360-367 - Taku Nakahara, Ryo Hashimoto, Hiroaki Nakagawa, Kenji Monde, Nobuaki Miura, Shin-Ichiro Nishimura:
Glycoconjugate Data Bank: Structures - an annotated glycan structure database and N-glycan primary structure verification service. 368-371 - Ren Zhang, Yan Lin, Chun-Ting Zhang:
Greglist: a database listing potential G-quadruplex regulated genes. 372-376 - Christian Selig, Matthias Wolf, Tobias Müller, Thomas Dandekar, Jörg Schultz:
The ITS2 Database II: homology modelling RNA structure for molecular systematics. 377-380 - Vinod Kumar Yadav, James Kappukalayil Abraham, Prithvi Mani, Rashi Kulshrestha, Shantanu Chowdhury:
QuadBase: genome-wide database of G4 DNA - occurrence and conservation in human, chimpanzee, mouse and rat promoters and 146 microbes. 381-385 - Mariusz Popenda, Marek Blazewicz, Marta Szachniuk, Ryszard W. Adamiak:
RNA FRABASE version 1.0: an engine with a database to search for the three-dimensional fragments within RNA structures. 386-391 - Eckart Bindewald, Robert Hayes, Yaroslava G. Yingling, Wojciech Kasprzak, Bruce A. Shapiro:
RNAJunction: a database of RNA junctions and kissing loops for three-dimensional structural analysis and nanodesign. 392-397 - Fabian Birzele, Jan E. Gewehr, Ralf Zimmer:
AutoPSI: a database for automatic structural classification of protein sequences and structures. 398-401 - Eldon L. Ulrich, Hideo Akutsu, Jurgen F. Doreleijers, Yoko Harano, Yannis E. Ioannidis, Jundong Lin, Miron Livny, Steve Mading, Dimitri Maziuk, Zachary Miller, Eiichi Nakatani, Christopher F. Schulte, David E. Tolmie, R. Kent Wenger, Hongyang Yao, John L. Markley:
BioMagResBank. 402-408 - Hidetoshi Kono, Tomo Yuasa, Shinya Nishiue, Kei Yura:
coliSNP database server mapping nsSNPs on protein structures. 409-413 - Corin Yeats, Jonathan G. Lees, Adam James Reid, Paul Kellam, Nigel J. Martin, Xinhui Liu, Christine A. Orengo:
Gene3D: comprehensive structural and functional annotation of genomes. 414-418 - Antonina Andreeva, Dave Howorth, John-Marc Chandonia, Steven E. Brenner, Tim J. P. Hubbard, Cyrus Chothia, Alexey G. Murzin:
Data growth and its impact on the SCOP database: new developments. 419-425 - Kim Henrick, Zukang Feng, Wolfgang Bluhm, Dimitris Dimitropoulos, Jurgen F. Doreleijers, Shuchismita Dutta, Judith L. Flippen-Anderson, John M. C. Ionides, Chisa Kamada, Eugene Krissinel, Catherine L. Lawson, John L. Markley, Haruki Nakamura, Richard H. Newman, Yukiko Shimizu, Jawahar Swaminathan, Sameer Velankar, Jeramia Ory, Eldon L. Ulrich, Wim F. Vranken, John D. Westbrook, Reiko Yamashita, Huanwang Yang, Jasmine Young, Muhammed Yousufuddin, Helen M. Berman:
Remediation of the protein data bank archive. 426-433 - Andreas Schlicker, Mario Albrecht:
FunSimMat: a comprehensive functional similarity database. 434-439 - The Gene Ontology project in 2008. 440-444
- Elspeth A. Bruford, Michael J. Lush, Mathew W. Wright, Tam P. Sneddon, Sue Povey, Ewan Birney:
The HGNC Database in 2008: a resource for the human genome. 445-448 - Shulamit Avraham, Chih-Wei Tung, Katica Ilic, Pankaj Jaiswal, Elizabeth A. Kellogg, Susan McCouch, Anuradha Pujar, Leonore Reiser, Seung Yon Rhee, Martin M. Sachs, Mary L. Schaeffer, Lincoln Stein, Peter F. Stevens, Leszek Vincent, Felipe Zapata, Doreen Ware:
The Plant Ontology Database: a community resource for plant structure and developmental stages controlled vocabulary and annotations. 449-454 - In Seok Yang, Chunsun Ryu, Ki Joon Cho, Jin Kwang Kim, Swee Hoe Ong, Wayne P. Mitchell, Bong Su Kim, Hee-Bok Oh, Kyung Hyun Kim:
IDBD: Infectious Disease Biomarker Database. 455-460 - Nicolas J. Tourasse, Anne-Brit Kolstø:
SuperCAT: a supertree database for combined and integrative multilocus sequence typing analysis of the Bacillus cereus group of bacteria (including B. cereus, B. anthracis and B. thuringiensis). 461-468 - Pierre Lechat, Laurence Hummel, Sandrine Rousseau, Ivan Moszer:
GenoList: an integrated environment for comparative analysis of microbial genomes. 469-474 - Konstantinos Liolios, Konstantinos Mavrommatis, Nektarios Tavernarakis, Nikos Kyrpides:
The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. 475-479 - Minoru Kanehisa, Michihiro Araki, Susumu Goto, Masahiro Hattori, Mika Hirakawa, Masumi Itoh, Toshiaki Katayama, Shuichi Kawashima, Shujiro Okuda, Toshiaki Tokimatsu, Yoshihiro Yamanishi:
KEGG for linking genomes to life and the environment. 480-484 - Emmanuel Courcelle, Yoann Beausse, Sébastien Letort, Olivier Stahl, Romain Fremez, Catherine Ngom-Bru, Jérôme Gouzy, Thomas Faraut:
Narcisse: a mirror view of conserved syntenies. 485-490 - Jaime Huerta-Cepas, Anibal Bueno, Joaquín Dopazo, Toni Gabaldón:
PhylomeDB: a database for genome-wide collections of gene phylogenies. 491-496 - R. Burke Squires, Catherine Macken, Adolfo Garcia-Sastre, Shubhada Godbole, Jyothi Noronha, Victoria Hunt, Roger L. Chang, Christopher N. Larsen, Edward B. Klem, Kevin Biersack, Richard H. Scheuermann:
BioHealthBase: informatics support in the elucidation of influenza virus host-pathogen interactions and virulence. 497-503 - Yi Huang, Susanna K. P. Lau, Patrick C. Y. Woo, Kwok-Yung Yuen:
CoVDB: a comprehensive database for comparative analysis of coronavirus genes and genomes. 504-511 - Carla Kuiken, Peter T. Hraber, James Thurmond, Karina Yusim:
The hepatitis C sequence database in Los Alamos. 512-516 - Inti Pedroso, Gustavo Rivera, Felipe Lazo, Max Chacón, Francisco Ossandón, Felipe A. Veloso, David S. Holmes:
AlterORF: a database of alternate open reading frames. 517-518 - Jeremy D. Glasner, Guy Plunkett III, Bradley D. Anderson, David J. Baumler, Bryan S. Biehl, Valerie Burland, Eric L. Cabot, Aaron E. Darling, Bob Mau, Eric C. Neeno-Eckwall, David Pot, Yu Qiu, Anna I. Rissman, Sara Worzella, Sam Zaremba, Joel Fedorko, Thomas Hampton, Paul Liss, Michael Rusch, Matthew Shaker, Lorie Shaull, Panna Shetty, Silpa Thotakura, Jon Whitmore, Frederick R. Blattner, John M. Greene, Nicole T. Perna:
Enteropathogen Resource Integration Center (ERIC): bioinformatics support for research on biodefense-relevant enterobacteria. 519-523 - Pere Puigbò, Antoni Romeu, Santiago Garcia-Vallvé:
HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection. 524-527 - Victor M. Markowitz, Ernest Szeto, Krishna Palaniappan, Yuri Grechkin, Ken Chu, I-Min A. Chen, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Natalia Ivanova, Nikos Kyrpides:
The integrated microbial genomes (IMG) system in 2007: data content and analysis tool extensions. 528-533 - Victor M. Markowitz, Natalia Ivanova, Ernest Szeto, Krishna Palaniappan, Ken Chu, Daniel Dalevi, I-Min A. Chen, Yuri Grechkin, Inna Dubchak, Iain Anderson, Athanasios Lykidis, Konstantinos Mavrommatis, Philip Hugenholtz, Nikos Kyrpides:
IMG/M: a data management and analysis system for metagenomes. 534-538 - Jian Yang, Lihong Chen, Lilian Sun, Jun Yu, Qi Jin:
VFDB 2008 release: an enhanced web-based resource for comparative pathogenomics. 539-542 - Roy R. Chaudhuri, Nicholas J. Loman, Lori A. S. Snyder, Christopher M. Bailey, Dov J. Stekel, Mark J. Pallen:
xBASE2: a comprehensive resource for comparative bacterial genomics. 543-546 - Alberto M. R. Dávila, Pablo N. Mendes, Glauber Wagner, Diogo A. Tschoeke, Rafael R. C. Cuadrat, Felipe Liberman, Luciana Matos, Thiago S. Satake, Kary A. C. S. Ocaña, Omar Triana, Sérgio Manuel Serra da Cruz, Henrique C. L. Jucá, Juliano C. Cury, Fabrício Nogueira da Silva, Guilherme A. Geronimo, Margarita Ruiz, Eduardo Ruback, Floriano P. Silva Jr., Christian M. Probst, Edmundo C. Grisard, Marco A. Krieger, Samuel Goldenberg, Maria Cláudia Reis Cavalcanti, Milton O. Moraes, Maria Luiza Machado Campos, Marta Mattoso:
ProtozoaDB: dynamic visualization and exploration of protozoan genomes. 547-552 - Bindu Gajria, Amit Bahl, John Brestelli, Jennifer Dommer, Steve Fischer, Xin Gao, Mark Heiges, John Iodice, Jessica C. Kissinger, Aaron J. Mackey, Deborah F. Pinney, David S. Roos, Christian J. Stoeckert Jr., Haiming Wang, Brian P. Brunk:
ToxoDB: an integrated Toxoplasma gondii database resource. 553-556 - Tristan Rossignol, Pierre Lechat, Christina Cuomo, Qiandong Zeng, Ivan Moszer, Christophe d'Enfert:
CandidaDB: a multi-genome database for Candida species and related Saccharomycotina. 557-561 - Jongsun Park, Bongsoo Park, Kyongyong Jung, Suwang Jang, Kwangyul Yu, Jaeyoung Choi, Sunghyung Kong, Jaejin Park, Seryun Kim, Hyojeong Kim, Soonok Kim, Jihyun F. Kim, Jaime E. Blair, Kwangwon Lee, Seogchan Kang, Yong-Hwan Lee:
CFGP: a web-based, comparative fungal genomics platform. 562-571 - Rainer Winnenburg, Martin Urban, Andrew M. Beacham, Thomas K. Baldwin, Sabrina Holland, Magdalen Lindeberg, Hilde Hansen, Christopher J. Rawlings, Kim E. Hammond-Kosack, Jacob Köhler:
PHI-base update: additions to the pathogen-host interaction database. 572-576 - Eurie L. Hong, Rama Balakrishnan, Qing Dong, Karen R. Christie, Julie Park, Gail Binkley, Maria C. Costanzo, Selina S. Dwight, Stacia R. Engel, Dianna G. Fisk, Jodi E. Hirschman, Benjamin C. Hitz, Cynthia J. Krieger, Michael S. Livstone, Stuart R. Miyasato, Robert S. Nash, Rose Oughtred, Marek S. Skrzypek, Shuai Weng, Edith D. Wong, Kathy K. Zhu, Kara Dolinski, David Botstein, J. Michael Cherry:
Gene Ontology annotations at SGD: new data sources and annotation methods. 577-581 - Alexie Papanicolaou, Steffi Gebauer-Jung, Mark L. Blaxter, W. Owen McMillan, Chris D. Jiggins:
ButterflyBase: a platform for lepidopteran genomics. 582-587 - Robert J. Wilson, Joshua L. Goodman, Victor B. Strelets:
FlyBase: integration and improvements to query tools. 588-593 - Marc S. Halfon, Steven M. Gallo, Casey M. Bergman:
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila. 594-598 - Sofia M. C. Robb, Eric Ross, Alejandro Sánchez Alvarado:
SmedGD: the Schmidtea mediterranea genome database. 599-606 - James C. Sullivan, Adam M. Reitzel, John R. Finnerty:
Upgrades to StellaBase facilitate medical and genetic studies on the starlet sea anemone, Nematostella vectensis. 607-611 - Anthony Rogers, Igor Antoshechkin, Tamberlyn Bieri, Darin Blasiar, Carol Bastiani, Payan Canaran, Juancarlos Chan, Wen J. Chen, Paul Davis, Jolene Fernandes, Tristan J. Fiedler, Michael Han, Todd W. Harris, Ranjana Kishore, Raymond Y. N. Lee, Sheldon J. McKay, Hans-Michael Müller, Cecilia Nakamura, Philip Ozersky,