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Samik Ghosh
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2010 – 2019
- 2019
- [r2]Ayako Yachie-Kinoshita, Sucheendra K. Palaniappan
, Samik Ghosh:
Computational Systems Biology Applications. Encyclopedia of Bioinformatics and Computational Biology (3) 2019: 66-73 - [r1]Sucheendra K. Palaniappan
, Ayako Yachie-Kinoshita, Samik Ghosh:
Computational Systems Biology. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 789-795 - 2017
- [i3]Stéphanie Boué, Thomas E. Exner, Samik Ghosh, Vincenzo Belcastro
, Joh Dokler, David Page, Akash R. Boda, Filipe Bonjour, Barry J. Hardy, Patrick Vanscheeuwijck, Julia Hoeng, Manuel C. Peitsch:
Supporting evidence-based analysis for modified risk tobacco products through a toxicology data-sharing infrastructure. F1000Research 6: 12- (2017) - 2016
- [c15]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. BioNLP@ACL 2016: 119-127 - [i2]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Extracting Biological Pathway Models From NLP Event Representations. CoRR abs/1608.03764 (2016) - [i1]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Measuring the State of the Art of Automated Pathway Curation Using Graph Algorithms - A Case Study of the mTOR Pathway. CoRR abs/1608.03767 (2016) - 2015
- [c14]Michael Spranger, Sucheendra K. Palaniappan, Samik Ghosh:
Extracting Biological Pathway Models From NLP Event Representations. BioNLP@IJCNLP 2015: 42-51 - 2014
- [j10]Takeshi Hase, Kaito Kikuchi
, Samik Ghosh, Hiroaki Kitano, Hiroshi Tanaka:
Identification of drug-target modules in the human protein-protein interaction network. Artif. Life Robotics 19(4): 406-413 (2014) - 2013
- [j9]Yukiko Matsuoka, Hiromi Matsumae, Manami Katoh, Amie J. Eisfeld
, Gabriele Neumann, Takeshi Hase, Samik Ghosh, Jason E. Shoemaker
, Tiago J. S. Lopes, Tokiko Watanabe, Shinji Watanabe, Satoshi Fukuyama, Hiroaki Kitano, Yoshihiro Kawaoka:
A comprehensive map of the influenza A virus replication cycle. BMC Syst. Biol. 7: 97 (2013) - [j8]Takeshi Hase, Samik Ghosh, Ryota Yamanaka, Hiroaki Kitano:
Harnessing Diversity towards the Reconstructing of Large Scale Gene Regulatory Networks. PLoS Comput. Biol. 9(11) (2013) - [c13]Yoshiyuki Asai, Takeshi Abe
, Hideki Oka, Masao Okita, Tomohiro Okuyama, Kenichi Hagihara, Samik Ghosh, Yukiko Matsuoka, Yoshihisa Kurachi, Hiroaki Kitano:
A versatile platform for multilevel modeling of physiological systems: Template/instance framework for large-scale modeling and simulation. EMBC 2013: 5529-5532 - 2012
- [j7]Satoshi Mizuno, Risa Iijima, Soichi Ogishima, Masataka Kikuchi, Yukiko Matsuoka, Samik Ghosh, Tadashi Miyamoto, Akinori Miyashita, Ryozo Kuwano, Hiroshi Tanaka:
AlzPathway: a comprehensive map of signaling pathways of Alzheimer's disease. BMC Syst. Biol. 6: 52 (2012) - 2010
- [j6]Yukiko Matsuoka, Samik Ghosh, Norihiro Kikuchi, Hiroaki Kitano:
Payao: a community platform for SBML pathway model curation. Bioinform. 26(10): 1381-1383 (2010)
2000 – 2009
- 2009
- [j5]Preetam Ghosh
, Samik Ghosh, Kalyan Basu, Sajal K. Das
:
Parametric modeling of protein-DNA binding kinetics: A discrete event based simulation approach. Discret. Appl. Math. 157(10): 2395-2415 (2009) - 2008
- [j4]Preetam Ghosh
, Samik Ghosh, Kalyan Basu, Sajal K. Das
:
Holding time estimation for reactions in stochastic event-based simulation of complex biological systems. Simul. Model. Pract. Theory 16(10): 1615-1639 (2008) - 2007
- [j3]Samik Ghosh, Kalyan Basu, Sajal K. Das
:
"MeshUp": Self-organizing mesh-based topologies for next generation radio access networks. Ad Hoc Networks 5(6): 652-679 (2007) - [j2]Habiba Skalli, Samik Ghosh, Sajal K. Das
, Luciano Lenzini:
Channel Assignment Strategies for Multiradio Wireless Mesh Networks: Issues and Solutions. IEEE Commun. Mag. 45(11): 86-95 (2007) - [j1]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
A Computationally Fast and Parametric Model to Estimate Protein-Ligand Docking Time for Stochastic Event Based Simulation. Trans. Comp. Sys. Biology 8: 14-41 (2007) - [c12]Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. Das:
Modeling the Stochastic Dynamics of Gene Expression in Single Cells: A Birth and Death Markov Chain Analysis. BIBM 2007: 308-316 - [c11]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das:
Modeling protein-DNA binding time in Stochastic Discrete Event Simulation of Biological Processes. CIBCB 2007: 439-446 - [c10]Samik Ghosh, Huan Li, Hee Lee, Prabir Das, Kalyan Basu, Sajal K. Das:
Revisiting the Optimal Partitioning of Zones in Next Generation Cellular Networks: A Network Capacity Impact Perspective. ITC 2007: 1011-1023 - 2006
- [c9]Samik Ghosh, Preetam Ghosh
, Kalyan Basu, Sajal K. Das
, Simon Daefler:
iSimBioSys: A Discrete Event Simulation Platform for 'in silico' study of biological systems. Annual Simulation Symposium 2006: 204-213 - [c8]Preetam Ghosh
, Samik Ghosh, Kalyan Basu, Sajal K. Das
, Simon Daefler:
A Stochastic model to estimate the time taken for Protein-Ligand Docking. CIBCB 2006: 1-8 - [c7]Preetam Ghosh, Samik Ghosh, Kalyan Basu, Sajal K. Das, Simon Daefler:
An analytical model to estimate the time taken for cytoplasmic reactions for stochastic simulation of complex biological systems. GrC 2006: 79-84 - [c6]Preetam Ghosh
, Samik Ghosh, Kalyan Basu, Sajal K. Das
, Simon Daefler:
Stochastic Modeling of Cytoplasmic Reactions in Complex Biological Systems. ICCSA (1) 2006: 566-576 - 2005
- [c5]Preetam Ghosh
, Samik Ghosh, Kalyan Basu, Sajal K. Das
:
A Diffusion Model to Estimate the Inter-arrival Time of Charged Molecules in Stochastic Event based Modeling of Complex Biological Networks. CSB Workshops 2005: 19-22 - [c4]Samik Ghosh, Preetam Ghosh
, Kalyan Basu, Sajal K. Das
:
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems. CSB Workshops 2005: 170-171 - [c3]Samik Ghosh, Kalyan Basu, Sajal K. Das:
FraNtiC: A Fractal Geometric Framework for Mesh-Based Wireless Access Networks. ICDCS 2005: 481-490 - [c2]Samik Ghosh, Preetam Ghosh
, Kalyan Basu, Sajal K. Das
:
GaMa : An Evolutionary Algorithmic Approach for the Design of Mesh-Based Radio Access Networks. LCN 2005: 374-381 - 2004
- [c1]Samik Ghosh, Pradip De, Kalyan Basu, Sajal K. Das
:
PeterNet: An Emergent Technology Based Radio Access Network Architecture for Next Generation Cellular Wireless Systems. BROADNETS 2004: 641-650
Coauthor Index
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