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ORCIDLinda J. Broadbelt
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Journal Articles
- 2023
[j13]Kevin M. Shebek, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo
:
Pickaxe: a Python library for the prediction of novel metabolic reactions. BMC Bioinform. 24(1): 106 (2023)- 2022
- [j12]Jonathan Strutz, Kevin M. Shebek, Linda J. Broadbelt, Keith E. J. Tyo:
MINE 2.0: enhanced biochemical coverage for peak identification in untargeted metabolomics. Bioinform. 38(13): 3484-3487 (2022) - 2019
- [j11]Beatriz Peñalver Bernabé, Ines Thiele, Eugene Galdones, Anaar Siletz, Sriram Chandrasekaran, Teresa K. Woodruff, Linda J. Broadbelt, Lonnie D. Shea:
Dynamic genome-scale cell-specific metabolic models reveal novel inter-cellular and intra-cellular metabolic communications during ovarian follicle development. BMC Bioinform. 20(1): 307:1-307:16 (2019) - [j10]Peter C. St. John, Jonathan Strutz, Linda J. Broadbelt, Keith E. J. Tyo, Yannick J. Bomble:
Bayesian inference of metabolic kinetics from genome-scale multiomics data. PLoS Comput. Biol. 15(11) (2019) - 2018
- [j9]Hanyu Gao, Andreas Wächter, Ivan A. Konstantinov, Steven G. Arturo, Linda J. Broadbelt:
Application and comparison of derivative-free optimization algorithms to control and optimize free radical polymerization simulated using the kinetic Monte Carlo method. Comput. Chem. Eng. 108: 268-275 (2018) - 2015
- [j8]Dante A. Pertusi, Andrew E. Stine, Linda J. Broadbelt, Keith E. J. Tyo:
Efficient searching and annotation of metabolic networks using chemical similarity. Bioinform. 31(7): 1016-1024 (2015) - [j7]James G. Jeffryes, Ricardo L. Colastani, Mona Elbadawi-Sidhu, Tobias Kind, Thomas D. Niehaus, Linda J. Broadbelt, Andrew D. Hanson, Oliver Fiehn, Keith E. J. Tyo, Christopher S. Henry:
MINEs: open access databases of computationally predicted enzyme promiscuity products for untargeted metabolomics. J. Cheminformatics 7: 44:1-44:8 (2015) - 2011
- [j6]Di Wu, Qin Wang, Rajeev S. Assary, Linda J. Broadbelt, Goran Krilov:
A Computational Approach To Design and Evaluate Enzymatic Reaction Pathways: Application to 1-Butanol Production from Pyruvate. J. Chem. Inf. Model. 51(7): 1634-1647 (2011) - 2010
- [j5]Stacey D. Finley, Linda J. Broadbelt, Vassily Hatzimanikatis:
In silico feasibility of novel biodegradation pathways for 1, 2, 4-trichlorobenzene. BMC Syst. Biol. 4: 7 (2010) - 2005
- [j4]Vassily Hatzimanikatis, Chunhui Li, Justin A. Ionita, Christopher S. Henry, Matthew D. Jankowski, Linda J. Broadbelt:
Exploring the diversity of complex metabolic networks. Bioinform. 21(8): 1603-1609 (2005) - 2003
- [j3]Ned C. Haubein, Scott A. McMillan, Linda J. Broadbelt:
Many-Body Optimization Using an Ab Initio Monte Carlo Method. J. Chem. Inf. Comput. Sci. 43(1): 68-74 (2003) - [j2]Hsi-Wu Wong, Xuegeng Li, Mark T. Swihart, Linda J. Broadbelt:
Encoding of Polycyclic Si-Containing Molecules for Determining Species Uniqueness in Automated Mechanism Generation. J. Chem. Inf. Comput. Sci. 43(3): 735-742 (2003) - [j1]Scott A. McMillan, Ned C. Haubein, Randall Q. Snurr, Linda J. Broadbelt:
Ab Initio Stochastic Optimization of Conformational and Many-Body Degrees of Freedom. J. Chem. Inf. Comput. Sci. 43(6): 1820-1828 (2003)
Coauthor Index
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