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2020 – today
- 2022
[j10]Marion F. S. Fischer
, James E. Crowe Jr., Jens Meiler:
Computational epitope mapping of class I fusion proteins using low complexity supervised learning methods. PLoS Comput. Biol. 18(12): 1010230 (2022)- 2021
- [j9]Taylor Jones, Samuel B. Day, Luke Myers, James E. Crowe Jr., Cinque S. Soto:
ClonoMatch: a tool for identifying homologous immunoglobulin and T-cell receptor sequences in large databases. Bioinform. 36(24): 5695-5697 (2021) - 2020
- [j8]Cinque S. Soto, Jessica A. Finn, Jordan R. Willis, Samuel B. Day, Robert S. Sinkovits, Taylor Jones, Samuel Schmitz, Jens Meiler, Andre Branchizio, James E. Crowe Jr.:
PyIR: a scalable wrapper for processing billions of immunoglobulin and T cell receptor sequences using IgBLAST. BMC Bioinform. 21(1): 314 (2020) - [j7]Marion F. Sauer, Alexander M. Sevy, James E. Crowe Jr., Jens Meiler:
Multi-state design of flexible proteins predicts sequences optimal for conformational change. PLoS Comput. Biol. 16(2) (2020)
2010 – 2019
- 2019
- [j6]Alexander M. Sevy, Cinque S. Soto, Robin G. Bombardi, Jens Meiler, James E. Crowe Jr.:
Immune repertoire fingerprinting by principal component analysis reveals shared features in subject groups with common exposures. BMC Bioinform. 20(1): 629 (2019) - 2018
- [j5]Alexander M. Sevy, Swetasudha Panda, James E. Crowe Jr., Jens Meiler, Yevgeniy Vorobeychik:
Integrating linear optimization with structural modeling to increase HIV neutralization breadth. PLoS Comput. Biol. 14(2) (2018) - 2015
- [j4]Alexander M. Sevy, Tim M. Jacobs, James E. Crowe Jr., Jens Meiler:
Design of Protein Multi-specificity Using an Independent Sequence Search Reduces the Barrier to Low Energy Sequences. PLoS Comput. Biol. 11(7) (2015) - 2014
- [j3]Bruno E. Correia, John T. Bates, Rebecca J. Loomis, Gretchen Baneyx, Chris Carrico, Joseph G. Jardine, Peter Rupert, Colin E. Correnti, Oleksandr Kalyuzhniy, Vinayak Vittal, Mary J. Connell, Eric Stevens, Alexandria Schroeter, Man Chen, Skye MacPherson, Andreia M. Serra, Yumiko Adachi, Margaret A. Holmes, Yuxing Li, Rachel E. Klevit, Barney S. Graham, Richard T. Wyatt, David Baker, Roland K. Strong, James E. Crowe Jr., Philip R. Johnson, William R. Schief:
Proof of principle for epitope-focused vaccine design. Nat. 507(7491): 201-206 (2014) - 2013
- [j2]Jordan R. Willis, Bryan S. Briney, Samuel L. DeLuca, James E. Crowe Jr., Jens Meiler:
Human Germline Antibody Gene Segments Encode Polyspecific Antibodies. PLoS Comput. Biol. 9(4) (2013)
2000 – 2009
- 2007
- [j1]Brett A. McKinney, David M. Reif, Bill C. White, James E. Crowe Jr., Jason H. Moore:
Evaporative cooling feature selection for genotypic data involving interactions. Bioinform. 23(16): 2113-2120 (2007) - 2006
- [c1]David M. Reif, Alison A. Motsinger, Brett A. McKinney, James E. Crowe Jr., Jason H. Moore:
Feature Selection using a Random Forests Classifier for the Integrated Analysis of Multiple Data Types. CIBCB 2006: 1-8
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