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Wout Bittremieux
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Books and Theses
- 2017
- [b1]Wout Bittremieux:
Computational solutions for quality control of mass spectrometry-based proteomics. University of Antwerp, Belgium, 2017
Journal Articles
- 2024
- [j6]Issar Arab
, Kristof Egghe, Kris Laukens, Ke Chen, Khaled H. Barakat
, Wout Bittremieux
:
Benchmarking of Small Molecule Feature Representations for hERG, Nav1.5, and Cav1.2 Cardiotoxicity Prediction. J. Chem. Inf. Model. 64(7): 2515-2527 (2024) - 2023
- [j5]Ceder Dens
, Kris Laukens
, Wout Bittremieux
, Pieter Meysman
:
The pitfalls of negative data bias for the T-cell epitope specificity challenge. Nat. Mac. Intell. 5(10): 1060-1062 (2023) - 2021
- [j4]Pieter Moris
, Joey De Pauw, Anna Postovskaya, Sofie Gielis
, Nicolas De Neuter
, Wout Bittremieux
, Benson Ogunjimi
, Kris Laukens
, Pieter Meysman
:
Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification. Briefings Bioinform. 22(4) (2021) - 2019
- [j3]Pieter Meysman
, Yvan Saeys
, Ehsan Sabaghian, Wout Bittremieux
, Yves Van de Peer
, Bart Goethals
, Kris Laukens:
Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph. IEEE ACM Trans. Comput. Biol. Bioinform. 16(5): 1496-1507 (2019) - 2018
- [j2]Aida Mrzic, Pieter Meysman
, Wout Bittremieux
, Pieter Moris
, Boris Cule, Bart Goethals
, Kris Laukens
:
Grasping frequent subgraph mining for bioinformatics applications. BioData Min. 11(1): 20:1-20:24 (2018) - 2015
- [j1]Stefan Naulaerts
, Pieter Meysman
, Wout Bittremieux
, Trung-Nghia Vu
, Wim Vanden Berghe
, Bart Goethals
, Kris Laukens
:
A primer to frequent itemset mining for bioinformatics. Briefings Bioinform. 16(2): 216-231 (2015)
Conference and Workshop Papers
- 2024
- [c3]Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing:
SpecHD: Hyperdimensional Computing Framework for FPGA-Based Mass Spectrometry Clustering. DATE 2024: 1-6 - 2022
- [c2]Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing:
Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing. PACT 2022: 536-537 - [c1]Melih Yilmaz, William Fondrie, Wout Bittremieux, Sewoong Oh, William S. Noble:
De novo mass spectrometry peptide sequencing with a transformer model. ICML 2022: 25514-25522
Informal and Other Publications
- 2023
- [i2]Sumukh Pinge, Weihong Xu, Jaeyoung Kang, Tianqi Zhang, Niema Moshiri, Wout Bittremieux, Tajana Rosing:
SpecHD: Hyperdimensional Computing Framework for FPGA-based Mass Spectrometry Clustering. CoRR abs/2311.12874 (2023) - 2022
- [i1]Jaeyoung Kang, Weihong Xu, Wout Bittremieux, Tajana Rosing:
Massively Parallel Open Modification Spectral Library Searching with Hyperdimensional Computing. CoRR abs/2211.16422 (2022)
Coauthor Index
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