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Lina Fatima Soualmia

Lina Soualmia

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affiliation: Université de Rouen Normandie, France

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2020 – today

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2024
[c61]
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Safaa Menad, Saïd Abdeddaïm, Lina Fatima Soualmia:
SiMHOMer: Siamese Models for Health Ontologies Merging and Validation Through Large Language Models. IWBBIO (1) 2024: 117-129
2023
[j19]
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Laura Gosselin, Catherine Letord, Romain Leguillon, Lina Fatima Soualmia, Badisse Dahamna, Abdelmalek Mouazer, Flavien Disson, Stéfan Jacques Darmoni, Julien Grosjean:
Modeling and integrating interactions involving the CYP450 enzyme system in a multi-terminology server: Contribution to information extraction from a clinical data warehouse. Int. J. Medical Informatics 170: 104976 (2023)
[j18]
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Ali Ayadi, Claudia S. Frydman, Wissame Laddada, Isabelle Imbert, Cecilia Zanni-Merk, Lina Fatima Soualmia:
Combining DEVS simulation and ontological modeling for hierarchical analysis of the SARS-CoV-2 replication. Simul. 99(10): 1011-1039 (2023)
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Safaa Menad, Wissame Laddada, Saïd Abdeddaïm, Lina Fatima Soualmia:
New Siamese Neural Networks for Text Classification and Ontologies Alignment. CCE 2023: 16-29
[c59]
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Safaa Menad, Saïd Abdeddaïm, Lina Fatima Soualmia:
BioSTransformers: Modèles de langage pour l'apprentissage sans exemple dans des textes biomédicaux. EGC 2023: 409-416
[c58]
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Safaa Menad, Wissame Laddada, Saïd Abdeddaïm, Lina Fatima Soualmia:
Nouveaux réseaux neuronaux profonds pour l'alignement d'ontologies. IC 2023: 110-115
[c57]
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Safaa Menad, Saïd Abdeddaïm, Lina Fatima Soualmia:
Flexible Classification, Question-Answering and Retrieval with Siamese Neural Networks for Biomedical Texts. FQAS 2023: 27-38
[c56]
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Safaa Menad, Wissame Laddada, Saïd Abdeddaïm, Lina Fatima Soualmia:
BioSTransformers for Biomedical Ontologies Alignment. KEOD 2023: 73-84
2022
[c55]
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Thibaut Pressat Laffouilhère, Julien Grosjean, Jean Pinson, Stéfan Jacques Darmoni, Emilie Leveque, Emilie Lanoy, Jacques Benichou, Lina Fatima Soualmia:
Ontological Representation of Causal Relations for a Deep Understanding of Associations Between Variables in Epidemiology. AIME 2022: 47-56
[c54]
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Wissame Laddada, Cecilia Zanni-Merk, Lina Fatima Soualmia:
Analyzing SARS-CoV-2 Sequence Patterns by Semantic Trajectories. ICIMTH 2022: 197-200
[c53]
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Gabriel H. A. Medeiros, Lina Fatima Soualmia, Cecilia Zanni-Merk, Ramiz Hagverdiyev:
Tracing and analyzing COVID-19 dissemination using knowledge graphs. KES 2022: 2172-2181
[c52]
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Thibaut Pressat Laffouilhère, Julien Grosjean, Jacques Benichou, Stéfan Jacques Darmoni, Lina Fatima Soualmia:
OntoBioStat: Supporting Causal Diagram Design and Analysis. MIE 2022: 302-306
2021
[j17]
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Maksim Koptelov, Albrecht Zimmermann, Bruno Crémilleux, Lina Fatima Soualmia:
LPbyCD: a new scalable and interpretable approach for Link Prediction via Community Detection in bipartite networks. Appl. Netw. Sci. 6(1): 72 (2021)
[c51]
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Ali Ayadi, Claudia S. Frydman, Wissame Laddada, Lina Fatima Soualmia, Cecilia Zanni-Merk, India L'Hote, Emeline Grellet, Isabelle Imbert:
Combining Devs and Semantic Technologies for Modeling the SARS-CoV-2 Replication Machinery. ANNSIM 2021: 1-12
[c50]
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Abdelmalek Mouazer, Romain Leguillon, Bertille Leroy, Karima Sedki, Christian Simon, Hector Falcoff, Matthieu Schuers, Sophie Dubois, Cédric Bousquet, Lina Soualmia, Catherine Letord, Stéfan Jacques Darmoni, Jacques Bouaud, Brigitte Séroussi, Rosy Tsopra, Jean-Baptiste Lamy:
ABiMed: Towards an Innovative Clinical Decision Support System for Medication Reviews and Polypharmacy Management. ICIMTH 2021: 61-64
[c49]
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Romain Lelong, Badisse Dahamna, Romain Leguillon, Julien Grosjean, Catherine Letord, Stéfan Jacques Darmoni, Lina Fatima Soualmia:
Assisting Data Retrieval with a Drug Knowledge Graph. ICIMTH 2021: 260-263
[c48]
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Wissame Laddada, Lina Fatima Soualmia, Cecilia Zanni-Merk, Ali Ayadi, Claudia S. Frydman, India L'Hote, Isabelle Imbert:
OntoRepliCov: an Ontology-Based Approach for Modeling the SARS-CoV-2 Replication Process. KES 2021: 487-496
[c47]
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Lina Fatima Soualmia, Vincent Lafon, Stéfan Jacques Darmoni:
Patient and Graph Embeddings for Predictive Diagnosis of Drug Iatrogenesis. MIE 2021: 482-483
[c46]
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Thibaut Pressat Laffouilhère, Julien Grosjean, Jacques Benichou, Stéfan Jacques Darmoni, Lina Fatima Soualmia:
Ontological Models Supporting Covariates Selection in Observational Studies. MIE 2021: 1095-1096
2020
[c45]
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Maksim Koptelov, Albrecht Zimmermann, Bruno Crémilleux, Lina Soualmia:
Link prediction via community detection in bipartite multi-layer graphs. SAC 2020: 430-439

2010 – 2019

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2019
[j16]
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Chloé Cabot, Stéfan Jacques Darmoni, Lina Fatima Soualmia:
Cimind: A phonetic-based tool for multilingual named entity recognition in biomedical texts. J. Biomed. Informatics 94 (2019)
[c44]
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Saïd Abdeddaïm, Sylvestre Vimard, Lina Fatima Soualmia:
The MeSH-Gram Neural Network Model: Extending Word Embedding Vectors with MeSH Concepts for Semantic Similarity. MedInfo 2019: 5-9
2018
[c43]
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Wiem Chebil, Lina Fatima Soualmia, Mohamed Nazih Omri:
Possibilistic Information Retrieval Model Based on a Multi-terminology. ADMA 2018: 66-79
[i1]
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Saïd Abdeddaïm, Sylvestre Vimard, Lina Fatima Soualmia:
The MeSH-gram Neural Network Model: Extending Word Embedding Vectors with MeSH Concepts for UMLS Semantic Similarity and Relatedness in the Biomedical Domain. CoRR abs/1812.02309 (2018)
2017
[j15]
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Jean-Baptiste Lamy, Lina Fatima Soualmia:
Formalization of the semantics of iconic languages: An ontology-based method and four semantic-powered applications. Knowl. Based Syst. 135: 159-179 (2017)
[c42]
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Mélissa Mary, Lina Fatima Soualmia, Xavier Gansel, Stéfan Jacques Darmoni, Daniel Karlsson, Stefan Schulz:
Ontological Representation of Laboratory Test Observables: Challenges and Perspectives in the SNOMED CT Observable Entity Model Adoption. AIME 2017: 14-23
[c41]
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Chloé Cabot, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
SIBM at CLEF eHealth Evaluation Lab 2017: Multilingual Information Extraction with CIM-IND. CLEF (Working Notes) 2017
[c40]
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Mélissa Mary, Lina Fatima Soualmia, Xavier Gansel:
Formalisation de la terminologie LOINC et évaluation de ses avantages pour la classification des tests de laboratoire. IC 2017: 2-13
[c39]
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Wiem Chebil, Lina Fatima Soualmia, Mohamed Nazih Omri, Stéfan Jacques Darmoni:
Indexing biomedical documents with Bayesian networks and terminologies. ISKE 2017: 1-6
2016
[j14]
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Mélissa Mary, Lina Fatima Soualmia, Xavier Gansel:
Interopérabilité sémantique entre vocabulaires contrôlés. Évaluation de la qualité des alignements sur des données de standards du diagnostic in vitro. Ingénierie des Systèmes d Inf. 21(5-6): 55-83 (2016)
[j13]
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Wiem Chebil, Lina Fatima Soualmia, Mohamed Nazih Omri, Stéfan Jacques Darmoni:
Indexing biomedical documents with a possibilistic network. J. Assoc. Inf. Sci. Technol. 67(4): 928-941 (2016)
[j12]
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Jean-Baptiste Lamy, Lina Fatima Soualmia, Catherine Duclos, Alain Venot:
Formalisation de la sémantique des langages iconiques. Méthode à base d'ontologie et applications. Rev. d'Intelligence Artif. 30(5): 579-606 (2016)
[c38]
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Chloé Cabot, Lina Fatima Soualmia, Badisse Dahamna, Stéfan Jacques Darmoni:
SIBM at CLEF eHealth Evaluation Lab 2016: Extracting Concepts in French Medical Texts with ECMT and CIMIND. CLEF (Working Notes) 2016: 47-60
[c37]
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Mélissa Mary, Lina Fatima Soualmia, Xavier Gansel:
Usability and Improvement of Existing Alignments: The LOINC-SNOMED CT Case Study. EKAW (Satellite Events) 2016: 145-148
[c36]
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Mélissa Mary, Lina Fatima Soualmia, Xavier Gansel:
Interopérabilité sémantique dans le domaine du diagnostic in vitro : évaluation d'algorithmes sur LOINC et l'ontologie SNOMED CT. IC 2016: 255-258
2015
[c35]
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Wiem Chebil, Lina Fatima Soualmia, Mohamed Nazih Omri, Stéfan Jacques Darmoni:
Biomedical Concepts Extraction Based on Possibilistic Network and Vector Space Model. AIME 2015: 227-231
[c34]
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Lina Fatima Soualmia, Chloé Cabot, Badisse Dahamna, Stéfan Jacques Darmoni:
SIBM at CLEF e-Health Evaluation Lab 2015. CLEF (Working Notes) 2015
[c33]
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Lina Fatima Soualmia, Romain Lelong, Badisse Dahamna, Stéfan Jacques Darmoni:
Rewriting Natural Language Queries Using Patterns. MRDM@ECIR 2015: 40-53
[c32]
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Chloé Cabot, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Intégration de données cliniques et omiques pour la recherche d'information dans le Dossier Patient Informatisé. IC 2015
2014
[j11]
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Nicolas Griffon, Gaétan Kerdelhué, Lina Fatima Soualmia, Tayeb Merabti, Julien Grosjean, Jean-Baptiste Lamy, Alain Venot, Catherine Duclos, Stéfan Jacques Darmoni:
Evaluating alignment quality between iconic language and reference terminologies using similarity metrics. BMC Medical Informatics Decis. Mak. 14: 17 (2014)
[j10]
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Wiem Chebil, Lina Fatima Soualmia, Mohamed Nazih Omri, Stéfan Jacques Darmoni:
Extraction possibiliste de concepts MeSH à partir de documents biomédicaux. Rev. d'Intelligence Artif. 28(6): 729-752 (2014)
[c31]
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Jean-Baptiste Lamy, Lina Fatima Soualmia, Alain Venot, Catherine Duclos:
Validation de la sémantique d'un langage iconique médical à l'aide d'une ontologie : méthodes et applications. IC 2014: 51-62
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Adila Merabti, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Detecting Noun Phrases in Biomedical Terminologies: The First Step in Managing the Evolution of Knowledge. HIS 2014: 109-120
[c29]
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Adila Merabti, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Using Biomedical Terminologies to extract Noun Phrases for managing knowledge evolution. IWBBIO 2014: 205-216
[c28]
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Julien Grosjean, Lina Fatima Soualmia, Khedidja Bouarech, Clément Jonquet, Stéfan Jacques Darmoni:
Comparing BioPortal and HeTOP: towards a unique biomedical ontology portal ? IWBBIO 2014: 227-237
[c27]
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Chloé Cabot, Julien Grosjean, Romain Lelong, Arnaud Lefebvre, Thierry Lecroq, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Omic Data Modelling for Information Retrieval. IWBBIO 2014: 415-424
[c26]
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Marie Hélène Metzger, Quentin Gicquel, Domoina Rabarijaona, Frédérique Segond, André Bittar, Luca Dini, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Usage secondaire du dossier médical informatisé à des fins épidémiologiques et d'évaluation de la qualité des soins : le projet SYNODOS. JFIM 2014: 152-161
[c25]
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Julien Grosjean, Lina Fatima Soualmia, Khedidja Bouarech, Clément Jonquet, Stéfan Jacques Darmoni:
An Approach to Compare Bio-Ontologies Portals. MIE 2014: 1008-1012
2013
[j9]
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Lina Fatima Soualmia, Saoussen Sakji, Catherine Letord, Laetitia Rollin, Philippe Massari, Stéfan Jacques Darmoni:
Improving information retrieval with multiple health terminologies in a quality-controlled gateway. Health Inf. Sci. Syst. 1(1): 8 (2013)
[j8]
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Jean-Baptiste Lamy, Lina Fatima Soualmia, Gaétan Kerdelhué, Alain Venot, Catherine Duclos:
Validating the semantics of a medical iconic language using ontological reasoning. J. Biomed. Informatics 46(1): 56-67 (2013)
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Wiem Chebil, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
BioDI: A New Approach to Improve Biomedical Documents Indexing. DEXA (1) 2013: 78-87
[c23]
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Tayeb Merabti, Lina Fatima Soualmia, Julien Grosjean, Catherine Letord, Stéfan Jacques Darmoni:
Assisting the Translation of SNOMED CT into French. MedInfo 2013: 47-51
[c22]
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Julien Grosjean, Tayeb Merabti, Lina Fatima Soualmia, Catherine Letord, Jean Charlet, Peter N. Robinson, Stéfan Jacques Darmoni:
Integrating the Human Phenotype Ontology into HeTOP Terminology-Ontology Server. MedInfo 2013: 961
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Stéfan Jacques Darmoni, Lina Fatima Soualmia, Nicolas Griffon, Julien Grosjean, Gaétan Kerdelhué, Ivan Kergourlay, Badisse Dahamna:
Multi-lingual Search Engine to Access PubMed Monolingual Subsets: A Feasibility Study. MedInfo 2013: 966
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Lina Fatima Soualmia, Catherine Letord, Tayeb Merabti, Nicolas Griffon, Jacques Manel, Stéfan Jacques Darmoni:
Translating MeSH Concepts. MedInfo 2013: 1007
2012
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Lina Fatima Soualmia, Élise Prieur-Gaston, Zied Moalla, Thierry Lecroq, Stéfan Jacques Darmoni:
Matching health information seekers' queries to medical terms. BMC Bioinform. 13(S-14): S11 (2012)
[c19]
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Julien Grosjean, Tayeb Merabti, Nicolas Griffon, Badisse Dahamna, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Multi-terminology cross-lingual modeling in the Health Terminology/Ontology Portal. AMIA 2012
[c18]
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Julien Grosjean, Lina Fatima Soualmia, Tayeb Merabti, Nicolas Griffon, Badisse Dahamna, Stéfan Jacques Darmoni:
Cross-lingual Access to Biomedical Terminologies and Ontologies. SWAT4LS 2012
2011
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Tayeb Merabti, Lina Fatima Soualmia, Julien Grosjean, Olivier Palombi, Jean-Michel Müller, Stéfan Jacques Darmoni:
Translating the foundational model of anatomy into french using knowledge-based and lexical methods. BMC Medical Informatics Decis. Mak. 11: 65 (2011)
[j5]
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Lina Fatima Soualmia:
Introduction. Rev. d'Intelligence Artif. 25(4): 443-444 (2011)
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Lina Fatima Soualmia, Nicolas Griffon, Julien Grosjean, Stéfan Jacques Darmoni:
Improving Information Retrieval by Meta-modelling Medical Terminologies. AIME 2011: 215-219
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Nicolas Griffon, Lina Fatima Soualmia, Aurélie Névéol, Philippe Massari, Benoît Thirion, Badisse Dahamna, Stéfan Jacques Darmoni:
Evaluation of Multi-Terminology Super-Concepts for Information Retrieval. MIE 2011: 492-496
2010
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Catherine Duclos, Lina Fatima Soualmia, Sonia Krivine, Anne Jamet, Agnès Lillo-Le Louët:
Modeling, building and evaluating an ontology for the automatic characterization of adverse drug effects during pharmacovigilance. MedInfo 2010: 1005-1009
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Lina Fatima Soualmia:
Proceedings of the Web Sémantique Médical workshop, affiliated to the 21emes Journées Francophones d'Ingénierie des Connaissances, WSM@IC 2010, Nîmes, France, June 8, 2010. CEUR Workshop Proceedings 600, CEUR-WS.org 2010 [contents]

2000 – 2009

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2009
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Sonia Krivine, Jérôme Nobécourt, Lina Fatima Soualmia, Farid Cerbah, Catherine Duclos:
Construction automatique d'ontologies à partir d'une base de données relationnelles : application au médicament dans le domaine de la pharmacovigilance. Actes d'IC 2009: 73-84
2008
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Lina Fatima Soualmia, Badisse Dahamna, Stéfan Jacques Darmoni:
Mining Knowledge from Corpora: an Application to Retrieval and Indexing. MIE 2008: 467-472
2007
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Marc Cuggia, Stéfan Jacques Darmoni, Nicolas Garcelon, Lina Fatima Soualmia, Annabel Bourde:
Doc'UMVF: Two search tools to provide quality-controlled teaching resources in French to students and teachers. Int. J. Medical Informatics 76(5-6): 357-362 (2007)
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Lina Fatima Soualmia, Badisse Dahamna:
Knowledge Acquisition from a Medical Corpus: Use and Return on Experiences. AIME 2007: 160-164
2006
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Stéfan Jacques Darmoni, Aurélie Névéol, Jean-Marie Renard, Jean-François Gehanno, Lina Fatima Soualmia, Badisse Dahamna, Benoît Thirion:
A MEDLINE categorization algorithm. BMC Medical Informatics Decis. Mak. 6: 7 (2006)
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Lina Fatima Soualmia, Badisse Dahamna, Benoît Thirion, Stéfan Jacques Darmoni:
Strategies for Health Information Retrieval. MIE 2006: 595-600
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Aurélie Névéol, Suzanne Pereira, Lina Fatima Soualmia, Benoît Thirion, Stéfan Jacques Darmoni:
A method of cross-lingual consumer health information retrieval. MIE 2006: 601-608
2005
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Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Combining different standards and different approaches for health information retrieval in a quality-controlled gateway. Int. J. Medical Informatics 74(2-4): 141-150 (2005)
2004
[b1]
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Lina Fatima Soualmia:
Etude et Evaluation d'Approches Multiples d'Expansion de Requêtes pour une Recherche d'Information Intelligente : Application au Domaine de la Santé sur l'Internet. (Study and Evaluation of Multiple Query Expansion Method for an Intelligent Information Retrieval / Study and Evaluation of Multiple Query Expansion Method for an Intelligent Information Retrieval : Application to the Health Domain on the Internet). INSA de Rouen, France, 2004
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Aurélie Névéol, Lina Fatima Soualmia, Magaly Douyère, Alexandrina Rogozan, Benoît Thirion, Stéfan Jacques Darmoni:
Using CISMeF MeSH "Encapsulated" terminology and a categorization algorithm for health resources. Int. J. Medical Informatics 73(1): 57-64 (2004)
[c9]
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Benoît Thirion, Magaly Douyère, Lina Fatima Soualmia, Badisse Dahamna, Jean-Philippe Leroy, Stéfan Jacques Darmoni:
Metadata element sets in the CISMeF Quality-Controlled Health Gateway. Dublin Core Conference 2004
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Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Combining Knowledge-Based Methods to Refine and Expand Queries in Medicine. FQAS 2004: 243-255
[c7]
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Lina Fatima Soualmia, Christine Golbreich, Stéfan Jacques Darmoni:
Representing the MeSH in OWL: Towards a semi-automatic migration. KR-MED 2004: 81-87
2003
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Lina Fatima Soualmia, Catherine Barry, Stéfan Jacques Darmoni:
Knowledge-Based Query Expansion. AIME 2003: 209-213
[c5]
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Natalia Grabar, Pierre Zweigenbaum, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
Matching controlled vocabulary words. MIE 2003: 445-450
[c4]
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Lina Fatima Soualmia, Stéfan Jacques Darmoni, Magaly Douyère, Benoît Thirion:
Modelisation of Consumer Health Information in a Quality-Controlled Gateway. MIE 2003: 701-706
2002
[c3]
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Natalia Grabar, Pierre Zweigenbaum, Lina Fatima Soualmia, Stéfan Jacques Darmoni:
A Study of the Adequacy of User and Indexing Vocabularies in Natural Language Queries to a MeSH-indexed Health Gateway. AMIA 2002
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Lina Fatima Soualmia, Stéfan Jacques Darmoni, Benoît Thirion, Magaly Douyère:
Health Consumer Information in a Quality-controlled Gateway. AMIA 2002
2000
[c1]
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Mohand-Said Hacid, Lina Fatima Soualmia, Farouk Toumani:
Schema Extraction for Semi-Structured Data. Description Logics 2000: 133-142

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