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Adam A. Margolin
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2020 – today
- 2021
- [j10]Gonzalo López
, Laura E. Egolf
, Federico M. Giorgi
, Sharon J. Diskin, Adam A. Margolin:
svpluscnv: analysis and visualization of complex structural variation data. Bioinform. 37(13): 1912-1914 (2021)
2010 – 2019
- 2018
- [j9]Dorota H. Sendorek, Cristian Caloian, Kyle Ellrott
, J. Christopher Bare, Takafumi N. Yamaguchi
, Adam D. Ewing
, Kathleen E. Houlahan, Thea C. Norman, Adam A. Margolin, Joshua M. Stuart
, Paul C. Boutros
:
Germline contamination and leakage in whole genome somatic single nucleotide variant detection. BMC Bioinform. 19(1): 28:1-28:9 (2018) - [j8]Christopher I Cooper, Delia Yao, Dorota H. Sendorek, Takafumi N. Yamaguchi
, Christine P'ng, Kathleen E. Houlahan, Cristian Caloian, Michael Fraser, Kyle Ellrott
, Adam A. Margolin, Robert G. Bristow
, Joshua M. Stuart
, Paul C. Boutros
:
Valection: design optimization for validation and verification studies. BMC Bioinform. 19(1): 339:1-339:11 (2018) - [c13]Erik A. Burlingame
, Adam A. Margolin, Joe W. Gray, Young Hwan Chang
:
SHIFT: speedy histopathological-to-immunofluorescent translation of whole slide images using conditional generative adversarial networks. Medical Imaging: Digital Pathology 2018: 1058105 - 2017
- [j7]Olga Nikolova, Russell Moser, Christopher Kemp, Mehmet Gönen
, Adam A. Margolin:
Modeling gene-wise dependencies improves the identification of drug response biomarkers in cancer studies. Bioinform. 33(9): 1362-1369 (2017) - [c12]Young Hwan Chang
, Guillaume Thibault, Owen Madin
, Vahid Azimi, Cole Meyers, Brett Johnson, Jason Link, Adam A. Margolin, Joe W. Gray:
Deep learning based Nucleus Classification in pancreas histological images. EMBC 2017: 672-675 - [c11]Young Hwan Chang
, Takahiro Tsujikawa
, Adam A. Margolin, Lisa M. Coussens, Joe W. Gray:
Multiplexed immunohistochemistry image analysis using sparse coding. EMBC 2017: 4046-4049 - [c10]Vahid Azimi, Young Hwan Chang
, Guillaume Thibault, Jaclyn Smith, Takahiro Tsujikawa
, Benjamin Kukull, Bradden Jensen, Christopher Corless, Adam A. Margolin, Joe W. Gray:
Breast cancer histopathology image analysis pipeline for tumor purity estimation. ISBI 2017: 1137-1140 - [c9]Young Hwan Chang
, Guillaume Thibault, Brett Johnson, Adam A. Margolin, Joe W. Gray:
Integrative analysis on histopathological image for identifying cellular heterogeneity. Medical Imaging: Digital Pathology 2017: 101400T - 2016
- [c8]Young Hwan Chang
, Guillaume Thibault, Vahid Azimi, Brett Johnson, Danielle Jorgens
, Jason Link, Adam A. Margolin, Joe W. Gray:
Quantitative analysis of histological tissue image based on cytological profiles and spatial statistics. EMBC 2016: 1175-1178 - 2015
- [j6]Benedict Paten, Mark Diekhans
, Brian J. Druker
, Stephen H. Friend, Justin Guinney
, Nadine Gassner, Mitchell Guttman, W. James Kent, Patrick Mantey, Adam A. Margolin, Matt Massie, Adam M. Novak
, Frank A. Nothaft, Lior Pachter
, David A. Patterson, Maciej Smuga-Otto, Joshua M. Stuart
, Laura J. van't Veer, Barbara J. Wold, David Haussler:
The NIH BD2K center for big data in translational genomics. J. Am. Medical Informatics Assoc. 22(6): 1143-1147 (2015) - [c7]Søren Brunak, Francisco M. de la Vega, Adam A. Margolin, Benjamin J. Raphael, Gunnar Rätsch, Joshua M. Stuart:
Session Introduction. Pacific Symposium on Biocomputing 2015: 8-9 - [c6]In Sock Jang, Rodrigo Dienstmann, Adam A. Margolin, Justin Guinney:
Stepwise Group Sparse Regression (SGSR): Gene-Set-Based Pharmacogenomic Predictive Models with Stepwise Selection of Functional Priors. Pacific Symposium on Biocomputing 2015: 32-43 - 2014
- [j5]Mehmet Gönen
, Adam A. Margolin:
Drug susceptibility prediction against a panel of drugs using kernelized Bayesian multitask learning. Bioinform. 30(17): 556-563 (2014) - [c5]Mehmet Gönen, Adam A. Margolin:
Kernelized Bayesian Transfer Learning. AAAI 2014: 1831-1839 - [c4]Mehmet Gönen, Adam A. Margolin:
Localized Data Fusion for Kernel k-Means Clustering with Application to Cancer Biology. NIPS 2014: 1305-1313 - [c3]Elias Chaibub Neto, In Sock Jang, Stephen H. Friend, Adam A. Margolin:
The Stream Algorithm: Computationally Efficient Ridge-Regression via Bayesian Model Averaging, and Applications to Pharmacogenomic Prediction of Cancer Cell Line Sensitivity. Pacific Symposium on Biocomputing 2014: 27-38 - [c2]In Sock Jang, Elias Chaibub Neto, Justin Guinney, Stephen H. Friend, Adam A. Margolin:
Systematic Assessment of Analytical Methods for Drug Sensitivity Prediction from Cancer Cell Line Data. Pacific Symposium on Biocomputing 2014: 63-74 - 2013
- [j4]Erhan Bilal, Janusz Dutkowski, Justin Guinney
, In Sock Jang
, Benjamin A. Logsdon, Gaurav Pandey, Benjamin A. Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H. Mecham, Oscar M. Rueda, Jorg Tost
, Christina Curtis
, Mariano J. Alvarez, Vessela N. Kristensen, Samuel Aparicio
, Anne-Lise Børresen-Dale, Carlos Caldas
, Andrea Califano
, Stephen H. Friend, Trey Ideker
, Eric E. Schadt, Gustavo A. Stolovitzky, Adam A. Margolin:
Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling. PLoS Comput. Biol. 9(5) (2013)
2000 – 2009
- 2007
- [j3]Adam A. Margolin, Teresa Palomero, Adolfo A. Ferrando, Andrea Califano
, Gustavo Stolovitzky:
ChIP-on-chip significance analysis reveals ubiquitous transcription factor binding. BMC Bioinform. 8(S-8) (2007) - 2006
- [j2]Adam A. Margolin, Ilya Nemenman
, Katia Basso, Chris Wiggins, Gustavo Stolovitzky, Riccardo Dalla Favera, Andrea Califano
:
ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context. BMC Bioinform. 7(S-1) (2006) - [c1]Kai Wang, Ilya Nemenman
, Nilanjana Banerjee, Adam A. Margolin, Andrea Califano:
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes. RECOMB 2006: 348-362 - 2005
- [j1]Adam A. Margolin, Joel Greshock, Tara L. Naylor, Yael Mosse, John M. Maris, Graham Bignell, Alexander I. Saeed, John Quackenbush
, Barbara L. Weber:
CGHAnalyzer: a stand-alone software package for cancer genome analysis using array-based DNA copy number data. Bioinform. 21(15): 3308-3311 (2005)
Coauthor Index
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last updated on 2024-08-15 23:49 CEST by the dblp team
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