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ORCIDMehdi Sadeghi
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2020 – today
- 2023
[j42]Seyed Amir Malekpour
, Maryam Shahdoust, Rosa Aghdam, Mehdi Sadeghi:
wpLogicNet: logic gate and structure inference in gene regulatory networks. Bioinform. 39(2) (2023)- 2022
- [j41]Mohammad Reza Karimi, Amir-Hossein Karimi, Shamsozoha Abolmaali, Mehdi Sadeghi, Ulf Schmitz:
Prospects and challenges of cancer systems medicine: from genes to disease networks. Briefings Bioinform. 23(1) (2022) - [j40]Rouhollah Maghsoudi, Mitra Mirzarezaee, Mehdi Sadeghi, Babak Nadjar Araabi:
Determining the adjusted initial treatment dose of warfarin anticoagulant medicine using kernel-based support vector regression. Comput. Methods Programs Biomed. 214: 106589 (2022) - [j39]Ramazan Teimouri Yansari, Mitra Mirzarezaee, Mehdi Sadeghi, Babak Nadjar Araabi:
A new survival analysis model in adjuvant Tamoxifen-treated breast cancer patients using manifold-based semi-supervised learning. J. Comput. Sci. 61: 101645 (2022) - 2020
- [j38]Seyed Amir Malekpour, Amir Reza Alizad-Rahvar, Mehdi Sadeghi:
LogicNet: probabilistic continuous logics in reconstructing gene regulatory networks. BMC Bioinform. 21(1): 318 (2020) - [j37]Sara Salmanian, Hamid Pezeshk, Mehdi Sadeghi:
Inter-protein residue covariation information unravels physically interacting protein dimers. BMC Bioinform. 21(1): 584 (2020) - [j36]Maryam S. Daneshpour, Hossein Mahjub, Hamid Pezeshk, Mehdi Sadeghi:
A Network-Based Comparison Between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1555-1562 (2020)
2010 – 2019
- 2018
- [j35]Farzaneh Salari, Fatemeh Zare-Mirakabad, Mehdi Sadeghi, Hassan Rokni-Zadeh:
Assessing the impact of exact reads on reducing the error rate of read mapping. BMC Bioinform. 19(1): 406:1-406:15 (2018) - [j34]Joan Adler, Sampo Kulju, Jari Hyväluoma, Keijo Mattila, Kit Choi, Ioannis Tziakos, Didrik Pinte, G. A. García, Y. Makushok, V. Makushok, J. Lama, G. Román-Pérez, Adham Hashibon, Mehdi Sadeghi, Nathan Franklin, Amihai Silverman:
Visualization in the integrated SimPhoNy multiscale simulation framework. Comput. Phys. Commun. 231: 45-61 (2018) - [j33]Seyed Amir Malekpour, Parsa Pakzad, Mohammad-Hadi Foroughmand-Araabi, Sama Goliaei, Ruzbeh Tusserkani, Bahram Goliaei, Mehdi Sadeghi:
Modeling the probability distribution of the bacterial burst size via a game-theoretic approach. J. Bioinform. Comput. Biol. 16(4): 1850012:1-1850012:22 (2018) - 2017
- [j32]Seyed Amir Malekpour, Hamid Pezeshk, Mehdi Sadeghi:
PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities. BMC Bioinform. 18(1): 30:1-30:11 (2017) - [j31]Fereshteh Chitsazian, Mehdi Sadeghi, Elahe Elahi:
Confident gene activity prediction based on single histone modification H2BK5ac in human cell lines. BMC Bioinform. 18(1): 67:1-67:14 (2017) - [j30]Bahareh Khazaei, Javad Salimi Sartakhti, Mohammad Hossein Manshaei, Quanyan Zhu, Mehdi Sadeghi, Seyed Rasoul Mousavi:
HIV-1-infected T-cells dynamics and prognosis: An evolutionary game model. Comput. Methods Programs Biomed. 152: 1-14 (2017) - 2016
- [j29]Naghmeh Pakdel-Lahiji, Morteza Bastami, Mehdi Sadeghi:
Seismic vulnerability assessment and risk modelling of telecommunication systems. Int. J. Crit. Infrastructures 12(4): 295-310 (2016) - [j28]Maryam Pourkamali Anaraki, Mehdi Sadeghi:
Honey bee-inspired algorithms for SNP haplotype reconstruction problem. J. Exp. Theor. Artif. Intell. 28(1-2): 201-214 (2016) - 2015
- [j27]Pegah Khosravi, Vahid H. Gazestani, Leila Pirhaji, Brian Law, Mehdi Sadeghi, Bahram Goliaei, Gary D. Bader:
Inferring interaction type in gene regulatory networks using co-expression data. Algorithms Mol. Biol. 10: 23 (2015) - [j26]Pegah Khosravi, Vahid H. Gazestani, Leila Pirhaji, Brian Law, Mehdi Sadeghi, Gary D. Bader, Bahram Goliaei:
Erratum to: Inferring interaction type in gene regulatory networks using co-expression data. Algorithms Mol. Biol. 10: 25 (2015) - [j25]Mohieddin Jafari, Mehdi Mirzaie, Mehdi Sadeghi:
Interlog protein network: an evolutionary benchmark of protein interaction networks for the evaluation of clustering algorithms. BMC Bioinform. 16: 319:1-319:9 (2015) - [j24]Ali Sharifi-Zarchi, Mehdi Totonchi, Keynoush Khaloughi, Razieh Karamzadeh, Marcos J. Araúzo-Bravo, Hossein Baharvand, Ruzbeh Tusserkani, Hamid Pezeshk, Hamidreza Chitsaz, Mehdi Sadeghi:
Increased robustness of early embryogenesis through collective decision-making by key transcription factors. BMC Syst. Biol. 9: 23 (2015) - [j23]Mohammad-Hadi Foroughmand-Araabi, Bahram Goliaei, Kasra Alishahi, Mehdi Sadeghi, Sama Goliaei:
Codon usage and protein sequence pattern dependency in different organisms: A Bioinformatics approach. J. Bioinform. Comput. Biol. 13(2): 1550002:1-1550002:17 (2015) - 2014
- [j22]Mahdi Heydari, Sayed-Amir Marashi, Ruzbeh Tusserkani, Mehdi Sadeghi:
Reconstruction of phylogenetic trees of prokaryotes using maximal common intervals. Biosyst. 124: 86-94 (2014) - [j21]Milad Gholami, Aryan Arbabi, Ali Sharifi-Zarchi, Hamidreza Chitsaz, Mehdi Sadeghi:
ARYANA: Aligning Reads by Yet Another Approach. BMC Bioinform. 15(S-9): S12 (2014) - [j20]Pegah Khosravi, Vahid H. Gazestani, Yazdan Asgari, Brian Law, Mehdi Sadeghi, Bahram Goliaei:
Network-based approach reveals Y chromosome influences prostate cancer susceptibility. Comput. Biol. Medicine 54: 24-31 (2014) - [j19]Mehdi Sadeghi, Keivan Maghooli, Mohammad Shahram Moein:
Using artificial immunity network for face verification. Int. Arab J. Inf. Technol. 11(4): 354-361 (2014) - [j18]Maryam Pourkamali Anaraki, Mehdi Sadeghi:
Efficient fast heuristic algorithms for minimum error correction haplotyping from SNP fragments. Int. J. Comput. Biol. Drug Des. 7(4): 358-368 (2014) - [j17]Mahdi Pakdaman Naeini, Behzad Moshiri, Babak Nadjar Araabi, Mehdi Sadeghi:
Learning by abstraction: Hierarchical classification model using evidential theoretic approach and Bayesian ensemble model. Neurocomputing 130: 73-82 (2014) - [j16]Alireza Vazifedoost, Maseud Rahgozar, Behzad Moshiri, Mehdi Sadeghi, Hon Nian Chua, See-Kiong Ng, Limsoon Wong:
Using data fusion for scoring reliability of protein-protein interactions. J. Bioinform. Comput. Biol. 12(4) (2014) - 2013
- [j15]Mehdi Sadeghi, Hossein Mirshojaeian Hosseini:
Evaluation of Fuzzy Linear Programming Application in Energy Models. Int. J. Energy Optim. Eng. 2(1): 50-59 (2013) - 2011
- [j14]Kaveh Kavousi, Behzad Moshiri, Mehdi Sadeghi, Babak Nadjar Araabi, Ali Akbar Moosavi-Movahedi:
A protein fold classifier formed by fusing different modes of pseudo amino acid composition via PSSM. Comput. Biol. Chem. 35(1): 1-9 (2011) - [j13]Alireza Meshkin, Nasser Ghasem-Aghaee, Mehdi Sadeghi:
Modeling and implementing an agent-based system for prediction of protein relative solvent accessibility. Expert Syst. Appl. 38(5): 6324-6332 (2011) - 2010
- [j12]Shahriar Arab, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk, Armita Sheari:
A pairwise residue contact area-based mean force potential for discrimination of native protein structure. BMC Bioinform. 11: 16 (2010) - [j11]Mitra Mirzarezaee, Babak Nadjar Araabi, Mehdi Sadeghi:
Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae. BMC Syst. Biol. 4: 172 (2010) - [j10]Ghasem Mahdevar, Javad Zahiri, Mehdi Sadeghi, Abbas Nowzari-Dalini, Hayedeh Ahrabian:
Tag SNP selection via a genetic algorithm. J. Biomed. Informatics 43(5): 800-804 (2010)
2000 – 2009
- 2009
- [j9]Ali Katanforoush, Mehdi Sadeghi, Hamid Pezeshk, Elahe Elahi:
Global haplotype partitioning for maximal associated SNP pairs. BMC Bioinform. 10: 269 (2009) - [j8]Fatemeh Zare-Mirakabad, Hayedeh Ahrabian, Mehdi Sadeghi, Abbas Nowzari-Dalini, Bahram Goliaei:
New scoring schema for finding motifs in DNA Sequences. BMC Bioinform. 10 (2009) - [j7]Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi, Amir Massoud Rahimi, Heydar Maboudi Afkham, Shahriar Arab:
STON: A novel method for protein three-dimensional structure comparison. Comput. Biol. Medicine 39(2): 166-172 (2009) - [c1]M-Hossein Moeinzadeh, Ehsan Asgarian, Morteza Mohammad Noori, Mehdi Sadeghi, Sara Sharifian-R:
F.C.A: Designing a fuzzy clustering algorithm for haplotype assembly. FUZZ-IEEE 2009: 1741-1744 - 2008
- [j6]Amir Momen-Roknabadi, Mehdi Sadeghi, Hamid Pezeshk, Sayed-Amir Marashi:
Impact of residue accessible surface area on the prediction of protein secondary structures. BMC Bioinform. 9 (2008) - [j5]Armita Sheari, Mehdi Kargar, Ali Katanforoush, Shahriar Arab, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Sayed-Amir Marashi:
A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. BMC Bioinform. 9 (2008) - [j4]Sayed-Rzgar Hosseini, Mehdi Sadeghi, Hamid Pezeshk, Changiz Eslahchi, Mahnaz Habibi:
PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive Calpha atoms. Comput. Biol. Chem. 32(6): 406-411 (2008) - 2007
- [j3]Roghayeh Zarei, Shahriar Arab, Mehdi Sadeghi:
A method for protein accessibility prediction based on residue types and conformational states. Comput. Biol. Chem. 31(5-6): 384-388 (2007) - 2006
- [j2]Sayed-Amir Marashi, Changiz Eslahchi, Hamid Pezeshk, Mehdi Sadeghi:
Impact of RNA structure on the prediction of donor and acceptor splice sites. BMC Bioinform. 7: 297 (2006) - [j1]Sayed-Amir Marashi, Hani Goodarzi, Mehdi Sadeghi, Changiz Eslahchi, Hamid Pezeshk:
Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. Comput. Biol. Chem. 30(1): 50-57 (2006)
Coauthor Index
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