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BMC Bioinformatics, Volume 18
Volume 18, Number 1, December 2017
- Dongmei Li
, Zidian Xie, Martin S. Zand, Thomas Fogg, Timothy D. Dye
:
Bon-EV: an improved multiple testing procedure for controlling false discovery rates. 1:1-1:10 - Annika Röhl, Alexander Bockmayr
:
A mixed-integer linear programming approach to the reduction of genome-scale metabolic networks. 2:1-2:10 - Johannes W. R. Martini
, Ning Gao, Diercles F. Cardoso
, Valentin Wimmer, Malena Erbe, Rodolfo J. C. Cantet, Henner Simianer:
Genomic prediction with epistasis models: on the marker-coding-dependent performance of the extended GBLUP and properties of the categorical epistasis model (CE). 3:1-3:16 - Xinyan Zhang
, Himel Mallick
, Zaixiang Tang, Lei Zhang, Xiangqin Cui, Andrew K. Benson
, Nengjun Yi:
Negative binomial mixed models for analyzing microbiome count data. 4:1-4:10 - Davoud Torkamaneh
, Jérôme Laroche, Maxime Bastien, Amina Abed, François Belzile
:
Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data. 5:1-5:7 - Fabio Cumbo
, Giulia Fiscon
, Stefano Ceri, Marco Masseroli, Emanuel Weitschek
:
TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas. 6:1-6:9 - Michael Piechotta, Emanuel Wyler
, Uwe Ohler, Markus Landthaler
, Christoph Dieterich
:
JACUSA: site-specific identification of RNA editing events from replicate sequencing data. 7:1-7:15 - Ariane L. Hofmann, Jonas Behr, Jochen Singer, Jack Kuipers
, Christian Beisel
, Peter Schraml, Holger Moch, Niko Beerenwinkel:
Detailed simulation of cancer exome sequencing data reveals differences and common limitations of variant callers. 8:1-8:15 - Milos D. Radovic, Mohamed F. Ghalwash
, Nenad Filipovic
, Zoran Obradovic:
Minimum redundancy maximum relevance feature selection approach for temporal gene expression data. 9:1-9:14 - Shirin Taghipour, Peyman Zarrineh, Mohammad Ganjtabesh, Abbas Nowzari-Dalini:
Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources. 10:1-10:9 - Robin Kobus, Christian Hundt, André Müller
, Bertil Schmidt
:
Accelerating metagenomic read classification on CUDA-enabled GPUs. 11:1-11:10 - Fabian Grandke
, Soumya Ranganathan, Nikkie van Bers, Jorn R. de Haan, Dirk Metzler
:
PERGOLA: fast and deterministic linkage mapping of polyploids. 12:1-12:9 - Michail Tsimpidis, Georgios Bachoumis, Kalliopi Mimouli, Zaharoula Kyriakopoulou, David L. Robertson
, Panayotis Markoulatos, Grigoris D. Amoutzias
:
T-RECs: rapid and large-scale detection of recombination events among different evolutionary lineages of viral genomes. 13:1-13:8 - Thomas S. Wingo
, Alex Kotlar, David J. Cutler:
MPD: multiplex primer design for next-generation targeted sequencing. 14:1-14:5 - Jinyu Li, Jörg Vervoorts
, Paolo Carloni
, Giulia Rossetti
, Bernhard Lüscher
:
Structural prediction of the interaction of the tumor suppressor p27KIP1 with cyclin A/CDK2 identifies a novel catalytically relevant determinant. 15:1-15:9 - Sameh Eid
, Samo Turk, Andrea Volkamer
, Friedrich Rippmann, Simone Fulle:
KinMap: a web-based tool for interactive navigation through human kinome data. 16:1-16:6 - Nicolas Bosc
, Christophe Meyer
, Pascal Bonnet
:
The use of novel selectivity metrics in kinase research. 17:1-17:12 - Wen Zhang
, Yanlin Chen, Feng Liu, Fei Luo, Gang Tian, Xiaohong Li:
Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data. 18:1-18:12 - Katrin Tebel, Vivien Boldt, Anne Steininger, Matthias Port, Grit Ebert, Reinhard Ullmann:
GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants. 19:1-19:8 - Hashem A. Shihab, Mark F. Rogers, Michael Ferlaino, Colin Campbell, Tom R. Gaunt
:
GTB - an online genome tolerance browser. 20:1-20:6 - Reedik Mägi
, Yury V. Suleimanov, Geraldine M. Clarke, Marika Kaakinen, Krista Fischer, Inga Prokopenko
, Andrew P. Morris:
SCOPA and META-SCOPA: software for the analysis and aggregation of genome-wide association studies of multiple correlated phenotypes. 25:1-25:8 - Roberto A. Barrero
, Kathryn R. Napier
, James Cunnington, Lia Liefting, Sandi Keenan, Rebekah A. Frampton
, Tamás O. Szabó, Simon Bulman
, Adam Hunter, Lisa Ward, Mark Whattam, Matthew I. Bellgard
:
An internet-based bioinformatics toolkit for plant biosecurity diagnosis and surveillance of viruses and viroids. 26:1-26:12 - Zhi-Ping Liu, Shutang Liu, Ruitang Chen, Xiaopeng Huang, Ling-Yun Wu
:
Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces. 27:1-27:13 - Seyed Amir Malekpour, Hamid Pezeshk, Mehdi Sadeghi:
PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities. 30:1-30:11 - Wei-Sheng Wu, Meng-Jhun Jhou:
MVIAeval: a web tool for comprehensively evaluating the performance of a new missing value imputation algorithm. 31:1-31:10 - Nikhil Cheerla
, Olivier Gevaert
:
MicroRNA based Pan-Cancer Diagnosis and Treatment Recommendation. 32:1-32:11 - Marco Albrecht
, Damian Stichel, Benedikt Müller, Ruth Merkle, Carsten Sticht, Norbert Gretz, Ursula Klingmüller
, Kai Breuhahn
, Franziska Matthäus
:
TTCA: an R package for the identification of differentially expressed genes in time course microarray data. 33:1-33:11 - Sylvester Olubolu Orimaye
, Jojo Sze-Meng Wong
, Karen Jennifer Golden, Chee Piau Wong, Ireneous N. Soyiri
:
Predicting probable Alzheimer's disease using linguistic deficits and biomarkers. 34:1-34:13 - Yi-Pin Lai, Liang-Bo Wang
, Wei-An Wang, Liang-Chuan Lai
, Mong-Hsun Tsai, Tzu-Pin Lu
, Eric Y. Chuang:
iGC - an integrated analysis package of gene expression and copy number alteration. 35:1-35:9 - Carles Hernandez-Ferrer
, Carlos Ruiz-Arenas
, Alba Beltran-Gomila, Juan R. González
:
MultiDataSet: an R package for encapsulating multiple data sets with application to omic data integration. 36:1-36:7 - Rashmi R. Hazarika
, Barbara De Coninck
, Lidia R. Yamamoto, Laura R. Martin, Bruno P. A. Cammue, Vera van Noort
:
ARA-PEPs: a repository of putative sORF-encoded peptides in Arabidopsis thaliana. 37:1-37:9 - Claire R. Williams
, Alyssa Baccarella
, Jay Z. Parrish, Charles C. Kim
:
Empirical assessment of analysis workflows for differential expression analysis of human samples using RNA-Seq. 38:1-38:12 - Yiding Lu, Yufan Guo, Anna Korhonen:
Link prediction in drug-target interactions network using similarity indices. 39:1-39:9 - Noah Eyal-Altman
, Mark Last, Eitan Rubin
:
PCM-SABRE: a platform for benchmarking and comparing outcome prediction methods in precision cancer medicine. 40:1-40:7 - N. Ari Wijetunga, Andrew D. Johnston
, Ryo Maekawa
, Fabien Delahaye
, Netha Ulahannan, Kami Kim
, John M. Greally:
SMITE: an R/Bioconductor package that identifies network modules by integrating genomic and epigenomic information. 41:1-41:13 - Fan Zhang, Patrick Flaherty
:
Variational inference for rare variant detection in deep, heterogeneous next-generation sequencing data. 45:1-45:10 - Tsukasa Fukunaga
, Wataru Iwasaki
:
Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants. 46:1-46:9 - Jiaoyun Yang, Haipeng Wang, Huitong Ding
, Ning An
, Gil Alterovitz:
Nonlinear dimensionality reduction methods for synthetic biology biobricks' visualization. 47:1-47:10 - Hatem Elshazly
, Yassine Souilmi
, Peter J. Tonellato, Dennis P. Wall, Mohamed Abouelhoda:
MC-GenomeKey: a multicloud system for the detection and annotation of genomic variants. 49:1-49:14 - Ying Li
, Xiaohu Shi, Yanchun Liang, Juan Xie, Yu Zhang, Qin Ma
:
RNA-TVcurve: a Web server for RNA secondary structure comparison based on a multi-scale similarity of its triple vector curve representation. 51:1-51:11 - David R. Penas
, Patricia González, Jose A. Egea
, Ramón Doallo, Julio R. Banga
:
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy. 52:1-52:24 - Virginie Stanislas
, Cyril Dalmasso, Christophe Ambroise:
Eigen-Epistasis for detecting gene-gene interactions. 54:1-54:14 - Victor Alexandre Padilha
, Ricardo J. G. B. Campello
:
A systematic comparative evaluation of biclustering techniques. 55:1-55:25 - Michal Jablonski
, Jana Starcuková
, Zenon Starcuk Jr.
:
Processing tracking in jMRUI software for magnetic resonance spectra quantitation reproducibility assurance. 56:1-56:11 - Onur Erbilgin, Benjamin P. Bowen, Suzanne M. Kosina
, Stefan Jenkins, Rebecca K. Lau
, Trent R. Northen:
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium. 57:1-57:12 - Giulia Paciello, Elisa Ficarra
:
FuGePrior: A novel gene fusion prioritization algorithm based on accurate fusion structure analysis in cancer RNA-seq samples. 58:1-58:12 - Yasir Rahmatallah
, Boris L. Zybailov
, Frank Emmert-Streib
, Galina V. Glazko:
GSAR: Bioconductor package for Gene Set analysis in R. 61:1-61:12 - Fereshteh Chitsazian, Mehdi Sadeghi, Elahe Elahi:
Confident gene activity prediction based on single histone modification H2BK5ac in human cell lines. 67:1-67:14 - Rob Eisinga
, Tom Heskes
, Ben Pelzer, Manfred te Grotenhuis:
Exact p-values for pairwise comparison of Friedman rank sums, with application to comparing classifiers. 68:1-68:18 - Xiaoke Ma, Zaiyi Liu, Zhongyuan Zhang, Xiao-Tai Huang
, Wanxin Tang:
Multiple network algorithm for epigenetic modules via the integration of genome-wide DNA methylation and gene expression data. 72:1-72:13 - Orsolya Pipek
, Dezso Ribli, János Molnár, Ádam Póti, Marcin Krzystanek, András Bodor, Gábor E. Tusnády, Zoltan Szallasi
, István Csabai
, David Szüts
:
Fast and accurate mutation detection in whole genome sequences of multiple isogenic samples with IsoMut. 73:1-73:11 - Shupeng Gui, Andrew P. Rice
, Rui Chen, Liang Wu, Ji Liu, Hongyu Miao
:
A scalable algorithm for structure identification of complex gene regulatory network from temporal expression data. 74:1-74:13 - Wutao Lin, Donghong Ji, Yanan Lu:
Disorder recognition in clinical texts using multi-label structured SVM. 75:1-75:11 - Zohar Zafrir, Tamir Tuller
:
Unsupervised detection of regulatory gene expression information in different genomic regions enables gene expression ranking. 77:1-77:10 - Govind Nair
, Christian Jungreuthmayer, Jürgen Zanghellini
:
Optimal knockout strategies in genome-scale metabolic networks using particle swarm optimization. 78:1-78:9 - Sinjini Sikdar, Susmita Datta:
A novel statistical approach for identification of the master regulator transcription factor. 79:1-79:11 - Cristiano Lacerda Nunes Pinto
, Cristiane Neri Nobre
, Luis Enrique Zárate
:
Transductive learning as an alternative to translation initiation site identification. 81:1-81:15 - Rui Henriques
, Francisco L. Ferreira, Sara C. Madeira
:
BicPAMS: software for biological data analysis with pattern-based biclustering. 82:1-82:16 - Mari van Reenen
, Johan A. Westerhuis, Carolus J. Reinecke, J. Hendrik Venter:
Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp. 83:1-83:13 - Anna C. Reisetter, Michael J. Muehlbauer, James R. Bain
, Michael Nodzenski, Robert D. Stevens, Olga Ilkayeva, Boyd E. Metzger, Christopher B. Newgard, William L. Lowe Jr., Denise M. Scholtens:
Mixture model normalization for non-targeted gas chromatography/mass spectrometry metabolomics data. 84:1-84:17 - James C. Wilgenbusch
, Wen Huang
, Kyle A. Gallivan:
Visualizing phylogenetic tree landscapes. 85:1-85:12 - Daniel Ian McSkimming, Khaled Rasheed, Natarajan Kannan:
Classifying kinase conformations using a machine learning approach. 86:1-86:15 - Jiapeng Zhou, Jing Xin, Yayun Niu, Shiwen Wu
:
DMDtoolkit: a tool for visualizing the mutated dystrophin protein and predicting the clinical severity in DMD. 87:1-87:10 - Vitaly A. Selivanov, Adrián Benito
, Anibal Miranda, Esther Aguilar
, Ibrahim Halil Polat
, Josep J. Centelles
, Anusha Jayaraman
, Paul W.-N. Lee, Silvia Marin
, Marta Cascante
:
MIDcor, an R-program for deciphering mass interferences in mass spectra of metabolites enriched in stable isotopes. 88:1-88:9 - Weiwei Ouyang, Qiang An, Jinying Zhao, Huaizhen Qin:
Erratum to: Integrating mean and variance heterogeneities to identify differentially expressed genes. 89:1 - Yanhui Fan
, You-Qiang Song
:
PyHLA: tests for the association between HLA alleles and diseases. 90:1-90:5 - Seung Hoan Choi, Adam Labadorf
, Richard H. Myers, Kathryn L. Lunetta
, Josée Dupuis
, Anita L. DeStefano
:
Evaluation of logistic regression models and effect of covariates for case-control study in RNA-Seq analysis. 91:1-91:13 - Quan Zhang, Yuzhen Ye
:
Not all predicted CRISPR-Cas systems are equal: isolated cas genes and classes of CRISPR like elements. 92:1-92:12 - Hirokazu Chiba
, Ikuo Uchiyama
:
SPANG: a SPARQL client supporting generation and reuse of queries for distributed RDF databases. 93:1-93:6 - W. Duncan Wadsworth, Raffaele Argiento
, Michele Guindani
, Jessica Galloway-Pena
, Samuel A. Shelburne, Marina Vannucci
:
An integrative Bayesian Dirichlet-multinomial regression model for the analysis of taxonomic abundances in microbiome data. 94:1-94:12 - Georgios A. Dalkas
, Marianne Rooman:
SEPIa, a knowledge-driven algorithm for predicting conformational B-cell epitopes from the amino acid sequence. 95:1-95:12 - Beatriz Serrano-Solano
, Antonio Díaz Ramos
, Jean-Karim Hériché
, Juan A. G. Ranea
:
How can functional annotations be derived from profiles of phenotypic annotations? 96:1-96:12 - Raja Ali
, Mikael Bark, Jorge Miró, Sayyed Muhammad
, Joel Sjöstrand, Syed M. Zubair, Raja M. Abbas, Lars Arvestad
:
VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces. 97:1-97:8 - Yanhui Hu
, Aram Comjean, Norbert Perrimon, Stephanie E. Mohr
:
The Drosophila Gene Expression Tool (DGET) for expression analyses. 98:1-98:9 - Yiming Zuo, Yi Cui, Guoqiang Yu, Ruijiang Li
, Habtom W. Ressom
:
Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO. 99:1-99:14 - Tran Tuan Anh, Le Thi Ly, Ngo Quoc Viet, Pham The Bao
:
Novel methods to optimize gene and statistic test for evaluation - an application for Escherichia coli. 100:1-100:10 - Yanglan Gan, Han Tao, Jihong Guan, Shuigeng Zhou:
iHMS: a database integrating human histone modification data across developmental stages and tissues. 103:1-103:9 - Gabriela F. Rodrigues-Luiz
, Mariana S. Cardoso, Hugo O. Valdivia
, Edward V. Ayala
, Célia M. F. Gontijo
, Thiago de S. Rodrigues, Ricardo T. Fujiwara
, Robson S. Lopes, Daniella C. Bartholomeu
:
TipMT: Identification of PCR-based taxon-specific markers. 104:1-104:8 - Andrew E. Teschendorff, Charles E. Breeze, Shijie C. Zheng
, Stephan Beck:
A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies. 105:1-105:14 - Muhammad Rizwan, Anam Naz
, Jamil Ahmad, Kanwal Naz, Ayesha Obaid, Tamsila Parveen, Muhammad Ahsan, Amjad Ali
:
VacSol: a high throughput in silico pipeline to predict potential therapeutic targets in prokaryotic pathogens using subtractive reverse vaccinology. 106:1-106:7 - Seyed Ziaeddin Alborzi, Marie-Dominique Devignes
, David W. Ritchie:
ECDomainMiner: discovering hidden associations between enzyme commission numbers and Pfam domains. 107:1-107:11 - Kosuke Yoshida
, Junichiro Yoshimoto
, Kenji Doya:
Sparse kernel canonical correlation analysis for discovery of nonlinear interactions in high-dimensional data. 108:1-108:11 - Chunwei Ma
, Shaohang Xu
, Geng Liu, Xin Liu
, Xun Xu
, Bo Wen
, Siqi Liu:
Improvement of peptide identification with considering the abundance of mRNA and peptide. 109:1-109:8 - Marika Kaakinen
, Reedik Mägi
, Krista Fischer, Jani Heikkinen
, Marjo-Riitta Järvelin, Andrew P. Morris, Inga Prokopenko
:
MARV: a tool for genome-wide multi-phenotype analysis of rare variants. 110:1-110:8 - Malte Petersen
, Karen Meusemann, Alexander Donath
, Daniel Dowling, Shanlin Liu
, Ralph S. Peters, Lars Podsiadlowski
, Alexandros Vasilikopoulos
, Xin Zhou, Bernhard Misof, Oliver Niehuis:
Orthograph: a versatile tool for mapping coding nucleotide sequences to clusters of orthologous genes. 111:1-111:10 - Francesco Napolitano
:
repo: an R package for data-centered management of bioinformatic pipelines. 112:1-112:9 - Yuri Bento Marques, Alcione de Paiva Oliveira, Ana Tereza Ribeiro de Vasconcelos
, Fabio Ribeiro Cerqueira:
Erratum to: Mirnacle: machine learning with SMOTE and random forest for improving selectivity in pre-miRNA ab initio prediction. 113:1 - Jasmit S. Shah
, Shesh N. Rai, Andrew P. DeFilippis
, Bradford G. Hill
, Aruni Bhatnagar, Guy N. Brock
:
Distribution based nearest neighbor imputation for truncated high dimensional data with applications to pre-clinical and clinical metabolomics studies. 114:1-114:13 - Julia Koehler Leman, Sergey Lyskov, Richard Bonneau:
Computing structure-based lipid accessibility of membrane proteins with mp_lipid_acc in RosettaMP. 115:1-115:9 - Matthias Barann
, Ralf Zimmer
, Fabian Birzele:
Manananggal - a novel viewer for alternative splicing events. 120:1-120:13 - Sergio Gonzalez
, Bernardo J. Clavijo, Máximo Rivarola
, Patricio Moreno, Paula Fernandez, Joaquín Dopazo, Norma Paniego
:
ATGC transcriptomics: a web-based application to integrate, explore and analyze de novo transcriptomic data. 121:1-121:9 - Lina Yao
, Kenneth Wei Min Tan, Tin Wee Tan, Yuan Kun Lee:
Exploring the transcriptome of non-model oleaginous microalga Dunaliella tertiolecta through high-throughput sequencing and high performance computing. 122:1-122:11 - Diego Pasqualin
, Marcos Barbeitos
, Fabiano Silva:
SFREEMAP - A simulation-free tool for stochastic mapping. 123:1-123:8 - Massimo Narizzano, Gabriele Arnulfo
, Serena Ricci
, Benedetta Toselli, Martin Tisdall
, Andrea Canessa
, Marco Massimo Fato
, Francesco Cardinale
:
SEEG assistant: a 3DSlicer extension to support epilepsy surgery. 124:1-124:13 - Ilya Zhbannikov
, Konstantin G. Arbeev, Igor Akushevich, Eric Stallard, Anatoliy I. Yashin:
stpm: an R package for stochastic process model. 125:1-125:12 - Damoon Nashta-ali, Ali Aliyari, Ahmad Ahmadian Moghadam, Mohammad Amin Edrisi
, Abolfazl Seyed Motahari, Babak Hossein Khalaj:
Meta-aligner: long-read alignment based on genome statistics. 126:1-126:9 - Joshua L. Cherry:
A practical exact maximum compatibility algorithm for reconstruction of recent evolutionary history. 127:1-127:12 - Florian Rohart
, Aida Eslami, Nicholas Matigian
, Stéphanie Bougeard
, Kim-Anh Lê Cao
:
MINT: a multivariate integrative method to identify reproducible molecular signatures across independent experiments and platforms. 128:1-128:13 - Li Zhang
, Jason Cham, Alan Paciorek, James Trager, Nadeem Sheikh, Lawrence Fong:
3D: diversity, dynamics, differential testing - a proposed pipeline for analysis of next-generation sequencing T cell repertoire data. 129:1-129:14 - Min Oh, Jaegyoon Ahn, Taekeon Lee, Giup Jang, Chihyun Park, Youngmi Yoon:
Drug voyager: a computational platform for exploring unintended drug action. 131:1-131:13 - Yu-Chiao Chiu, Li-Ju Wang, Tzu-Pin Lu
, Tzu-Hung Hsiao, Eric Y. Chuang, Yidong Chen:
Differential correlation analysis of glioblastoma reveals immune ceRNA interactions predictive of patient survival. 132:1-132:11 - Sarah Sandmann
, Aniek O. de Graaf, Martin Dugas
:
BBCAnalyzer: a visual approach to facilitate variant calling. 133:1-133:6 - Xiaoyong Pan, Hong-Bin Shen:
RNA-protein binding motifs mining with a new hybrid deep learning based cross-domain knowledge integration approach. 136:1-136:14 - Saghi Nojoomi, Patrice Koehl
:
String kernels for protein sequence comparisons: improved fold recognition. 137:1-137:15 - Philip L. Tzou
, Xiaoqiu Huang, Robert W. Shafer:
NucAmino: a nucleotide to amino acid alignment optimized for virus gene sequences. 138:1-138:6 - M.-H. Elsensohn, N. Leblay, Sarra Dimassi, Amandine Campan-Fournier, A. Labalme, Florence Roucher Boulez
, D. Sanlaville, Gaetan Lesca
, C. Bardel, Pascal Roy
:
Statistical method to compare massive parallel sequencing pipelines. 139:1-139:11 - Pathima Nusrath Hameed
, Karin Verspoor
, Snezana Kusljic, Saman K. Halgamuge:
Positive-Unlabeled Learning for inferring drug interactions based on heterogeneous attributes. 140:1-140:15 - Martin Nettling, Hendrik Treutler, Jesús Cerquides
, Ivo Grosse:
Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies. 141:1-141:10 - Antonio Fabregat
, Konstantinos Sidiropoulos
, Guilherme Viteri, Oscar Forner-Martinez, Pablo Marín-García
, Vicente Arnau
, Peter D'Eustachio, Lincoln Stein, Henning Hermjakob
:
Reactome pathway analysis: a high-performance in-memory approach. 142:1-142:9 - Pratyaydipta Rudra, W. Jenny Shi, Brian Vestal, Pamela H. Russell, Aaron Odell, Robin D. Dowell
, Richard Radcliffe
, Laura M. Saba, Katerina J. Kechris:
Model based heritability scores for high-throughput sequencing data. 143:1-143:16 - Aidi Zhang, Libo He, Yaping Wang:
Prediction of GCRV virus-host protein interactome based on structural motif-domain interactions. 145:1-145:13 - Richard J. Cotton
, Birgit Ploier, Michael A. Goren, Anant K. Menon
, Johannes Graumann
:
flippant-An R package for the automated analysis of fluorescence-based scramblase assays. 146:1-146:7 - Yong Chen, Li Zhao, Yi Wang, Ming Cao, Violet Gelowani, Mingchu Xu, Smriti A. Agrawal, Yumei Li, Stephen P. Daiger, Richard A. Gibbs, Fei Wang
, Rui Chen:
SeqCNV: a novel method for identification of copy number variations in targeted next-generation sequencing data. 147:1-147:9 - Vera Rieder
, Bernhard Blank-Landeshammer
, Marleen Stuhr
, Tilman Schell
, Karsten Biß, Laxmikanth Kollipara, Achim Meyer
, Markus Pfenninger,