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2020 – today
- 2023
[j35]Marwan Abdellah
, Juan Jose Garcia-Cantero, Nadir Román Guerrero, Alessandro Foni, Jay S. Coggan, Corrado Calì, Marco Agus, Eleftherios Zisis, Daniel Keller, Markus Hadwiger, Pierre J. Magistretti, Henry Markram, Felix Schürmann:
Ultraliser: a framework for creating multiscale, high-fidelity and geometrically realistic 3D models for in silico neuroscience. Briefings Bioinform. 24(1) (2023)- [j34]James B. Aimone, Omar Awile, Markus Diesmann, James C. Knight, Thomas Nowotny, Felix Schürmann:
Editorial: Neuroscience, computing, performance, and benchmarks: Why it matters to neuroscience how fast we can compute. Frontiers Neuroinformatics 17 (2023) - [j33]Luca Leonardo Bologna, Antonino Tocco, Roberto Smiriglia, Armando Romani, Felix Schürmann, Michele Migliore:
Online interoperable resources for building hippocampal neuron models via the Hippocampus Hub. Frontiers Neuroinformatics 17 (2023) - [j32]Shailesh Appukuttan, Luca Leonardo Bologna, Felix Schürmann, Michele Migliore, Andrew P. Davison:
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience. Neuroinformatics 21(1): 101-113 (2023) - [c33]George Mitenkov, Ioannis Magkanaris, Omar Awile, Pramod S. Kumbhar, Felix Schürmann, Alastair F. Donaldson:
MOD2IR: High-Performance Code Generation for a Biophysically Detailed Neuronal Simulation DSL. CC 2023: 203-215 - 2022
- [j31]Omar Awile, Pramod S. Kumbhar, Nicolas Cornu, Salvador Dura-Bernal, James Gonzalo King, Olli Lupton, Ioannis Magkanaris, Robert A. McDougal, Adam J. H. Newton, Fernando Pereira, Alexandru Savulescu, Nicholas T. Carnevale, William W. Lytton, Michael L. Hines, Felix Schürmann:
Modernizing the NEURON Simulator for Sustainability, Portability, and Performance. Frontiers Neuroinformatics 16 (2022) - [j30]Weiliang Chen, Tristan Carel, Omar Awile, Nicola Cantarutti, Giacomo Castiglioni, Alessandro Cattabiani, Baudouin Del Marmol, Iain Hepburn, James G. King, Christos Kotsalos, Pramod S. Kumbhar, Jules Lallouette, Samuel Melchior, Felix Schürmann, Erik De Schutter:
STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale. Frontiers Neuroinformatics 16 (2022) - 2021
- [j29]Marwan Abdellah, Alessandro Foni, Eleftherios Zisis, Nadir Román Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Henry Markram, Felix Schürmann:
Metaball skinning of synthetic astroglial morphologies into realistic mesh models for in silico simulations and visual analytics. Bioinform. 37(Supplement): 426-433 (2021) - [j28]Jan Krepl, Francesco Casalegno, Emilie Delattre, Csaba Erö, Huanxiang Lu, Daniel Keller, Dimitri Rodarie, Henry Markram, Felix Schürmann:
Supervised Learning With Perceptual Similarity for Multimodal Gene Expression Registration of a Mouse Brain Atlas. Frontiers Neuroinformatics 15: 691918 (2021) - 2020
- [j27]Marwan Abdellah, Nadir Román Guerrero, Samuel Lapere, Jay S. Coggan, Daniel Keller, Benoit Coste, Snigdha Dagar, Jean-Denis Courcol, Henry Markram, Felix Schürmann:
Interactive visualization and analysis of morphological skeletons of brain vasculature networks with VessMorphoVis. Bioinform. 36(Supplement-1): i534-i541 (2020) - [j26]Francesco Cremonesi, Georg Hager, Gerhard Wellein, Felix Schürmann:
Analytic performance modeling and analysis of detailed neuron simulations. Int. J. High Perform. Comput. Appl. 34(4) (2020) - [j25]Francesco Cremonesi, Felix Schürmann:
Understanding Computational Costs of Cellular-Level Brain Tissue Simulations Through Analytical Performance Models. Neuroinformatics 18(3): 407-428 (2020) - [j24]Timothée Ewart, Francesco Cremonesi, Felix Schürmann, Fabien Delalondre:
Polynomial Evaluation on Superscalar Architecture, Applied to the Elementary Function ex. ACM Trans. Math. Softw. 46(3): 28:1-28:22 (2020) - [c32]Pramod S. Kumbhar, Omar Awile, Liam Keegan, Jorge Blanco Alonso, James Gonzalo King, Michael L. Hines, Felix Schürmann:
An Optimizing Multi-platform Source-to-source Compiler Framework for the NEURON MODeling Language. ICCS (1) 2020: 45-58 - [c31]Bruno R. C. Magalhães, Michael L. Hines, Thomas Sterling, Felix Schürmann:
Fully-Asynchronous Fully-Implicit Variable-Order Variable-Timestep Simulation of Neural Networks. ICCS (5) 2020: 94-108 - [i7]Bruno R. C. Magalhães, Felix Schürmann:
Efficient Distributed Transposition Of Large-Scale Multigraphs And High-Cardinality Sparse Matrices. CoRR abs/2012.06012 (2020)
2010 – 2019
- 2019
- [j23]Bruno R. C. Magalhães, Thomas Sterling, Michael L. Hines, Felix Schürmann:
Asynchronous Branch-Parallel Simulation of Detailed Neuron Models. Frontiers Neuroinformatics 13: 54 (2019) - [j22]Pramod S. Kumbhar, Michael L. Hines, Jeremy Fouriaux, Aleksandr Ovcharenko, James Gonzalo King, Fabien Delalondre, Felix Schürmann:
CoreNEURON : An Optimized Compute Engine for the NEURON Simulator. Frontiers Neuroinformatics 13: 63 (2019) - [c30]Bruno R. C. Magalhães, Thomas Sterling, Michael L. Hines, Felix Schürmann:
Fully-Asynchronous Cache-Efficient Simulation of Detailed Neural Networks. ICCS (3) 2019: 421-434 - [c29]Bruno R. C. Magalhães, Thomas Sterling, Felix Schürmann, Michael L. Hines:
Exploiting Flow Graph of System of ODEs to Accelerate the Simulation of Biologically-Detailed Neural Networks. IPDPS 2019: 176-187 - [c28]Marwan Abdellah, Cyrille Favreau, Juan Hernando, Samuel Lapere, Felix Schürmann:
Generating High Fidelity Surface Meshes of Neocortical Neurons using Skin Modifiers. CGVC 2019: 45-53 - [c27]Jonas Karlsson, Marwan Abdellah, Sébastien Speierer, Alessandro Foni, Samuel Lapere, Felix Schürmann:
High Fidelity Visualization of Large Scale Digitally Reconstructed Brain Circuitry with Signed Distance Functions. IEEE VIS (Short Papers) 2019: 176-180 - [i6]Francesco Cremonesi, Georg Hager, Gerhard Wellein, Felix Schürmann:
Analytic Performance Modeling and Analysis of Detailed Neuron Simulations. CoRR abs/1901.05344 (2019) - [i5]Pramod S. Kumbhar, Omar Awile, Liam Keegan, Jorge Blanco Alonso, James Gonzalo King, Michael L. Hines, Felix Schürmann:
An optimizing multi-platform source-to-source compiler framework for the NEURON MODeling Language. CoRR abs/1905.02241 (2019) - [i4]Bruno R. C. Magalhães, Michael L. Hines, Thomas Sterling, Felix Schürmann:
Fully-Asynchronous Fully-Implicit Variable-Order Variable-Timestep Simulation of Neural Networks. CoRR abs/1907.00670 (2019) - 2018
- [j21]Marwan Abdellah, Juan Hernando, Stefan Eilemann, Samuel Lapere, Nicolas Antille, Henry Markram, Felix Schürmann:
NeuroMorphoVis: a collaborative framework for analysis and visualization of neuronal morphology skeletons reconstructed from microscopy stacks. Bioinform. 34(13): i574-i582 (2018) - [j20]Rosanna Migliore, Carmen Alina Lupascu, Luca Leonardo Bologna, Armando Romani, Jean-Denis Courcol, Stefano Antonel, Werner Van Geit, Alex M. Thomson, Audrey Mercer, Sigrun Lange, Joanne Falck, Christian Rössert, Ying Shi, Olivier Hagens, Maurizio Pezzoli, Tamás F. Freund, Szabolcs Káli, Eilif B. Müller, Felix Schürmann, Henry Markram, Michele Migliore:
The physiological variability of channel density in hippocampal CA1 pyramidal cells and interneurons explored using a unified data-driven modeling workflow. PLoS Comput. Biol. 14(9) (2018) - [c26]Judit Planas, Fabien Delalondre, Felix Schürmann:
Accelerating Data Analysis in Simulation Neuroscience with Big Data Technologies. ICCS (1) 2018: 363-377 - 2017
- [j19]Marwan Abdellah, Juan Hernando, Nicolas Antille, Stefan Eilemann, Henry Markram, Felix Schürmann:
Reconstruction and visualization of large-scale volumetric models of neocortical circuits for physically-plausible in silico optical studies. BMC Bioinform. 18(S-10): 39-50 (2017) - [j18]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Julian C. Shillcock, Henry Markram, Felix Schürmann:
Bio-physically plausible visualization of highly scattering fluorescent neocortical models for in silico experimentation. BMC Bioinform. 18(S-2): 62:1-62:14 (2017) - [c25]Timothée Ewart, Judit Planas, Francesco Cremonesi, Kai Langen, Felix Schürmann, Fabien Delalondre:
Neuromapp: A Mini-application Framework to Improve Neural Simulators. ISC 2017: 181-198 - [c24]Stefan Eilemann, Marwan Abdellah, Nicolas Antille, Ahmet Bilgili, Grigory Chevtchenko, Raphael Dumusc, Cyrille Favreau, Juan Hernando, Daniel Nachbaur, Pawel Podhajski, Jafet Villafranca, Felix Schürmann:
From Big Data to Big Displays High-Performance Visualization at Blue Brain. ISC Workshops 2017: 662-675 - [i3]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
A Physically Plausible Model for Rendering Highly Scattering Fluorescent Participating Media. CoRR abs/1706.03024 (2017) - [i2]Stefan Eilemann, Marwan Abdellah, Nicolas Antille, Ahmet Bilgili, Grigory Chevtchenko, Raphael Dumusc, Cyrille Favreau, Juan Hernando, Daniel Nachbaur, Pawel Podhajski, Jafet Villafranca, Felix Schürmann:
From Big Data to Big Displays: High-Performance Visualization at Blue Brain. CoRR abs/1706.10098 (2017) - 2016
- [j17]Werner Van Geit, Michael Gevaert, Giuseppe Chindemi, Christian Rössert, Jean-Denis Courcol, Eilif B. Müller, Felix Schürmann, Idan Segev, Henry Markram:
BluePyOpt: Leveraging Open Source Software and Cloud Infrastructure to Optimise Model Parameters in Neuroscience. Frontiers Neuroinformatics 10: 17 (2016) - [j16]William W. Lytton, Alexandra Seidenstein, Salvador Dura-Bernal, Robert A. McDougal, Felix Schürmann, Michael L. Hines:
Simulation Neurotechnologies for Advancing Brain Research: Parallelizing Large Networks in NEURON. Neural Comput. 28(10): 2063-2090 (2016) - [c23]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
Physically-based Rendering of Highly Scattering Fluorescent Solutions using Path Tracing. Eurographics (Posters) 2016: 17-18 - [c22]Stefan Eilemann, Fabien Delalondre, Jon Bernard, Judit Planas, Felix Schürmann, John Biddiscombe, Costas Bekas, Alessandro Curioni, Bernard Metzler, Peter Kaltstein, Peter Morjan, Joachim Fenkes, Ralph Bellofatto, Lars Schneidenbach, T. J. Christopher Ward, Blake G. Fitch:
Key/Value-Enabled Flash Memory for Complex Scientific Workflows with On-Line Analysis and Visualization. IPDPS 2016: 608-617 - [c21]Bruno R. C. Magalhães, Farhan Tauheed, Thomas Heinis, Anastasia Ailamaki, Felix Schürmann:
An Efficient Parallel Load-Balancing Framework for Orthogonal Decomposition of Geometrical Data. ISC 2016: 81-97 - [c20]Pramod S. Kumbhar, Michael L. Hines, Aleksandr Ovcharenko, Damián A. Mallón, James Gonzalo King, Florentino Sainz, Felix Schürmann, Fabien Delalondre:
Leveraging a Cluster-Booster Architecture for Brain-Scale Simulations. ISC 2016: 363-380 - 2015
- [j15]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
Physically-based in silico light sheet microscopy for visualizing fluorescent brain models. BMC Bioinform. 16(S11): S8 (2015) - [j14]Daniel Keller, Norbert Babai, Olexiy Kochubey, Yunyun Han, Henry Markram, Felix Schürmann, Ralf Schneggenburger:
An Exclusion Zone for Ca2+ Channels around Docked Vesicles Explains Release Control by Multiple Channels at a CNS Synapse. PLoS Comput. Biol. 11(5) (2015) - [c19]Marwan Abdellah, Ahmet Bilgili, Stefan Eilemann, Henry Markram, Felix Schürmann:
A Computational Model of Light-Sheet Fluorescence Microscopy using Physically-based Rendering. Eurographics (Posters) 2015: 15-16 - [c18]Aleksandr Ovcharenko, Pramod S. Kumbhar, Michael L. Hines, Francesco Cremonesi, Timothée Ewart, Stuart Yates, Felix Schürmann, Fabien Delalondre:
Simulating Morphologically Detailed Neuronal Networks at Extreme Scale. PARCO 2015: 787-796 - [c17]Timothée Ewart, Stuart Yates, Francesco Cremonesi, Pramod S. Kumbhar, Felix Schürmann, Fabien Delalondre:
Performance evaluation of the IBM POWER8 architecture to support computational neuroscientific application using morphologically detailed neurons. PMBS@SC 2015: 1:1-1:11 - [c16]Adrien Devresse, Fabien Delalondre, Felix Schürmann:
Nix based fully automated workflows and ecosystem to guarantee scientific result reproducibility across software environments and systems. SE-HPCCSE@SC 2015: 25-31 - 2014
- [c15]Farhan Tauheed, Thomas Heinis, Felix Schürmann, Henry Markram, Anastasia Ailamaki:
OCTOPUS: Efficient query execution on dynamic mesh datasets. ICDE 2014: 1000-1011 - [c14]Felix Schürmann, Fabien Delalondre, Pramod S. Kumbhar, John Biddiscombe, Miguel Gila, Davide Tacchella, Alessandro Curioni, Bernard Metzler, Peter Morjan, Joachim Fenkes, Michele Franceschini, Robert S. Germain, Lars Schneidenbach, T. J. Christopher Ward, Blake G. Fitch:
Rebasing I/O for Scientific Computing: Leveraging Storage Class Memory in an IBM BlueGene/Q Supercomputer. ISC 2014: 331-347 - [c13]Timothée Ewart, Fabien Delalondre, Felix Schürmann:
Cyme: A Library Maximizing SIMD Computation on User-Defined Containers. ISC 2014: 440-449 - 2013
- [c12]Juan Hernando, John Biddiscombe, Bidur Bohara, Stefan Eilemann, Felix Schürmann:
Practical Parallel Rendering of Detailed Neuron Simulations. EGPGV@Eurographics 2013: 49-56 - 2012
- [j13]Farhan Tauheed, Thomas Heinis, Felix Schürmann, Henry Markram, Anastasia Ailamaki:
SCOUT: Prefetching for Latent Feature Following Queries. Proc. VLDB Endow. 5(11): 1531-1542 (2012) - [j12]Sebastien Lasserre, Juan Hernando, Sean L. Hill, Felix Schürmann, Pedro de Miguel Anasagasti, Georges Abou Jaoudé, Henry Markram:
A Neuron Membrane Mesh Representation for Visualization of Electrophysiological Simulations. IEEE Trans. Vis. Comput. Graph. 18(2): 214-227 (2012) - [c11]Juan Hernando, Felix Schürmann, Luis Pastor:
Towards real-time visualization of detailed neural tissue models: View frustum culling for parallel rendering. BioVis 2012: 25-32 - [c10]Stefan Eilemann, Ahmet Bilgili, Marwan Abdellah, Juan Hernando, Maxim Makhinya, Renato Pajarola, Felix Schürmann:
Parallel Rendering on Hybrid Multi-GPU Clusters. EGPGV@Eurographics 2012: 109-117 - [c9]Farhan Tauheed, Laurynas Biveinis, Thomas Heinis, Felix Schürmann, Henry Markram, Anastasia Ailamaki:
Accelerating Range Queries for Brain Simulations. ICDE 2012: 941-952 - [c8]Jean Gonnord, Felix Schürmann, James C. Sexton, Jesús Labarta:
HPCS 2012 keynotes: Tuesday keynote: Europe back in the HPC race: Building a European ecosystem to recover and maintain the capacity of designing and building large computers. HPCS 2012 - [i1]Farhan Tauheed, Thomas Heinis, Felix Schürmann, Henry Markram, Anastasia Ailamaki:
SCOUT: Prefetching for Latent Feature Following Queries. CoRR abs/1208.0276 (2012) - 2011
- [j11]Michael L. Hines, Sameer Kumar, Felix Schürmann:
Comparison of neuronal spike exchange methods on a Blue Gene/P supercomputer. Frontiers Comput. Neurosci. 5: 49 (2011) - [j10]Rajnish Ranjan, Georges Khazen, Luca Gambazzi, Srikanth Ramaswamy, Sean L. Hill, Felix Schürmann, Henry Markram:
Channelpedia: An Integrative and Interactive Database for Ion Channels. Frontiers Neuroinformatics 5: 36 (2011) - [j9]Etay Hay, Sean L. Hill, Felix Schürmann, Henry Markram, Idan Segev:
Models of Neocortical Layer 5b Pyramidal Cells Capturing a Wide Range of Dendritic and Perisomatic Active Properties. PLoS Comput. Biol. 7(7) (2011) - [j8]Shaul Druckmann, Thomas K. Berger, Felix Schürmann, Sean L. Hill, Henry Markram, Idan Segev:
Effective Stimuli for Constructing Reliable Neuron Models. PLoS Comput. Biol. 7(8) (2011)
2000 – 2009
- 2009
- [j7]James Gonzalo King, Michael L. Hines, Sean L. Hill, Philip H. Goodman, Henry Markram, Felix Schürmann:
A component-based extension framework for large-scale parallel simulations in NEURON. Frontiers Neuroinformatics 3: 10 (2009) - 2008
- [j6]Renaud Jolivet, Arnd Roth, Felix Schürmann, Wulfram Gerstner, Walter Senn:
Special issue on quantitative neuron modeling. Biol. Cybern. 99(4-5): 237-239 (2008) - [j5]Shaul Druckmann, Thomas K. Berger, Sean L. Hill, Felix Schürmann, Henry Markram, Idan Segev:
Evaluating automated parameter constraining procedures of neuron models by experimental and surrogate data. Biol. Cybern. 99(4-5): 371-379 (2008) - [j4]Renaud Jolivet, Felix Schürmann, Thomas K. Berger, Richard Naud, Wulfram Gerstner, Arnd Roth:
The quantitative single-neuron modeling competition. Biol. Cybern. 99(4-5): 417-426 (2008) - [j3]James R. Kozloski, Konstantinos Sfyrakis, Sean L. Hill, Felix Schürmann, Charles C. Peck, Henry Markram:
Identifying, tabulating, and analyzing contacts between branched neuron morphologies. IBM J. Res. Dev. 52(1-2): 43-56 (2008) - [j2]Michael L. Hines, Hubert Eichner, Felix Schürmann:
Neuron splitting in compute-bound parallel network simulations enables runtime scaling with twice as many processors. J. Comput. Neurosci. 25(1): 203-210 (2008) - [j1]Michael L. Hines, Henry Markram, Felix Schürmann:
Fully implicit parallel simulation of single neurons. J. Comput. Neurosci. 25(3): 439-448 (2008) - 2007
- [c7]Charles C. Peck, James R. Kozloski, Guillermo A. Cecchi, Sean L. Hill, Felix Schürmann, Henry Markram, Ravi Rao:
Network-Related Challenges and Insights from Neuroscience. BIOWIRE 2007: 67-78 - [c6]Adnan Abid, Asif Jan, Laurent Francioli, Konstantinos Sfyrakis, Felix Schürmann:
Keyword Based Indexing and Searching over Storage Resource Broker. OTM Conferences (2) 2007: 1233-1243 - 2005
- [b1]Felix Schürmann:
Exploring liquid computing in a hardware adaptation: construction and operation of a neural network experiment. University of Heidelberg, Germany, 2005, pp. 1- - 2004
- [c5]Felix Schürmann, Karlheinz Meier, Johannes Schemmel:
Edge of Chaos Computation in Mixed-Mode VLSI - A Hard Liquid. NIPS 2004: 1201-1208 - 2003
- [c4]Tillmann Schmitz, Steffen G. Hohmann, Karlheinz Meier, Johannes Schemmel, Felix Schürmann:
Speeding up Hardware Evolution: A Coprocessor for Evolutionary Algorithms. ICES 2003: 274-285 - 2002
- [c3]Felix Schürmann, Steffen G. Hohmann, Johannes Schemmel, Karlheinz Meier:
Towards an Artificial Neural Network Framework. Evolvable Hardware 2002: 266-273 - [c2]Steffen G. Hohmann, Johannes Schemmel, Felix Schürmann, Karlheinz Meier:
Exploring The Parameter Space Of A Genetic Algorithm For Training An Analog Neural Network. GECCO 2002: 375-382 - 2001
- [c1]Johannes Schemmel, Karlheinz Meier, Felix Schürmann:
A VLSI Implementation of an Analog Neural Network Suited for Genetic Algorithms. ICES 2001: 50-61
Coauthor Index
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