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M. Gonzalo Claros

Manuel Gonzalo Claros

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Journal Articles

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2018
[j9]
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Pedro Seoane, Marina Espigares, Rosario Carmona, Álvaro Polonio, Julia Quintana, Enrico Cretazzo, Josefina Bota, Alejandro Pérez-García, Juan de Dios Alché, Luis Gómez, M. Gonzalo Claros:
TransFlow: a modular framework for assembling and assessing accurate de novo transcriptomes in non-model organisms. BMC Bioinform. 19-S(14): 97-114 (2018)
[j8]
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Daniel Urda, Francisco Aragón, Rocío Bautista, Leonardo Franco, Francisco J. Veredas, Manuel Gonzalo Claros, José Manuel Jerez:
BLASSO: integration of biological knowledge into a regularized linear model. BMC Syst. Biol. 12(5): 13-26 (2018)
2014
[j7]
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Rafael Marcos Luque Baena, Daniel Urda, M. Gonzalo Claros, Leonardo Franco, José M. Jerez:
Robust gene signatures from microarray data using genetic algorithms enriched with biological pathway keywords. J. Biomed. Informatics 49: 32-44 (2014)
2010
[j6]
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Darío Guerrero-Fernández, Rocío Bautista, David P. Villalobos, Francisco R. Cantón, M. Gonzalo Claros:
AlignMiner: a Web-based tool for detection of divergent regions in multiple sequence alignments of conserved sequences. Algorithms Mol. Biol. 5: 24 (2010)
[j5]
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Juan Falgueras, Antonio J. Lara, Noé Fernández-Pozo, Francisco R. Cantón, Guillermo Pérez-Trabado, M. Gonzalo Claros:
SeqTrim: a high-throughput pipeline for pre-processing any type of sequence read. BMC Bioinform. 11: 38 (2010)
[j4]
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  - journals/nar/RamirezMKGPCT10
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Sergio Ramírez, Antonio Muñoz-Merida, Tor Johan Mikael Karlsson, Maximiliano García, Antonio J. Pérez-Pulido, M. Gonzalo Claros, Oswaldo Trelles:
MOWServ: a web client for integration of bioinformatic resources. Nucleic Acids Res. 38(Web-Server-Issue): 671-676 (2010)
2009
[j3]
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  - journals/bmcbi/Martin-RequenaMCT09
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Victoria Martin-Requena, Antonio Muñoz-Merida, M. Gonzalo Claros, Oswaldo Trelles:
PreP+07: improvements of a user friendly tool to preprocess and analyse microarray data. BMC Bioinform. 10 (2009)
1995
[j2]
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  - journals/bioinformatics/Claros95
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M. Gonzalo Claros:
MitoProt, a Macintosh application for studying mitochondrial proteins. Comput. Appl. Biosci. 11(4): 441-447 (1995)
1994
[j1]
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M. Gonzalo Claros, Gunnar von Heijne:
TopPred II: an improved software for membrane protein structure predictions. Comput. Appl. Biosci. 10(6): 685-686 (1994)

Conference and Workshop Papers

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2020
[c20]
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Elena Espinosa, Macarena Arroyo, Rafael Larrosa, Manuel Manchado, M. Gonzalo Claros, Rocío Bautista:
Micro-Variations from RNA-seq Experiments for Non-model Organisms. IWBBIO 2020: 542-549
2019
[c19]
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  - conf/iwbbio/Cordoba-Caballero19
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José Córdoba-Caballero, Pedro Seoane-Zonjic, Manuel Manchado, M. Gonzalo Claros:
De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow. IWBBIO (1) 2019: 48-59
[c18]
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Macarena Arroyo, Rafael Larrosa, M. Gonzalo Claros, Rocío Bautista:
Expression Change Correlations Between Transposons and Their Adjacent Genes in Lung Cancers Reveal a Genomic Location Dependence and Highlights Cancer-Significant Genes. IWBBIO (1) 2019: 84-92
[c17]
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Elena Lima-Cabello, Isabel Martínez-Beas, Estefanía García-Quirós, Rosario Carmona, M. Gonzalo Claros, Jose Carlos Jimenez-Lopez, Juan de Dios Alché:
Structural and Functional Features of Glutathione Reductase Transcripts from Olive (Olea europaea L.) Seeds. IWBBIO (1) 2019: 178-191
2018
[c16]
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Rafael Larrosa, Macarena Arroyo, Rocío Bautista, Carmen María López-Rodríguez, M. Gonzalo Claros:
NearTrans Can Identify Correlated Expression Changes Between Retrotransposons and Surrounding Genes in Human Cancer. IWBBIO (1) 2018: 373-382
2017
[c15]
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Estefanía García-Quirós, Rosario Carmona, Adoración Zafra, M. Gonzalo Claros, Juan de Dios Alché:
Identification and in silico Analysis of Glutathione Reductase Transcripts Expressed in Olive (Olea europaea L.) Pollen and Pistil. IWBBIO (2) 2017: 185-195
[c14]
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Marina Espigares, Pedro Seoane, Rocío Bautista, Julia Quintana, Luis Gómez, M. Gonzalo Claros:
Obtaining the Most Accurate de novo Transcriptomes for Non-model Organisms: The Case of Castanea sativa. IWBBIO (2) 2017: 489-499
2016
[c13]
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Adoración Zafra, José Carlos Jimenez-Lopez, Rosario Carmona, M. Gonzalo Claros, Juan de Dios Alché:
Transcriptome-Based Identification of a Seed Olive Legumin (11S Globulin). Characterization of Subunits, 3D Modelling and Molecular Assessment of Allergenicity. IWBBIO 2016: 59-70
[c12]
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Rosario Carmona, Pedro Seoane, Adoración Zafra, María José Jiménez-Quesada, Juan de Dios Alché, M. Gonzalo Claros:
Automatic Workflow for the Identification of Constitutively-Expressed Genes Based on Mapped NGS Reads. IWBBIO 2016: 403-414
2015
[c11]
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  - conf/iwbbio/GayteMC15
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Isabel González Gayte, Rocío Bautista Moreno, M. Gonzalo Claros:
DEgenes Hunter - A Self-customised Gene Expression Analysis Workflow for Non-model Organisms. IWBBIO (2) 2015: 313-321
[c10]
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  - conf/iwbbio/VelascoSC15
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David Velasco, Pedro Seoane, M. Gonzalo Claros:
Bioinformatics Analyses to Separate Species Specific mRNAs from Unknown Sequences in de novo Assembled Transcriptomes. IWBBIO (2) 2015: 322-332
[c9]
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María José Jiménez-Quesada, Jose Ángel Traverso, Adoración Zafra, Jose C. Jimenez-Lopez, Rosario Carmona, M. Gonzalo Claros, Juan D. Alché:
Identification and in silico Analysis of NADPH Oxidase Homologues Involved in Allergy from an Olive Pollen Transcriptome. IWBBIO (1) 2015: 450-459
[c8]
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Adoración Zafra, Rosario Carmona, Jose C. Jimenez-Lopez, Amada Pulido, M. Gonzalo Claros, Juan D. Alché:
Identification of Distinctive Variants of the Olive Pollen Allergen Ole e 5 (Cu, Zn Superoxide Dismutase) throughout the Analysis of the Olive Pollen Transcriptome. IWBBIO (1) 2015: 460-470
2014
[c7]
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Pedro Seoane, Rosario Carmona, Rocío Bautista, Darío Guerrero-Fernández, Manuel Gonzalo Claros:
AutoFlow: an easy way to build workflows. IWBBIO 2014: 342-349
2013
[c6]
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Darío Guerrero-Fernández, Rafael Larrosa, M. Gonzalo Claros:
FQbin a compatible and optimized format for storing and managing sequence data. IWBBIO 2013: 337-344
[c5]
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Hicham Benzekri, Darío Guerrero-Fernández, Rocío Bautista, M. Gonzalo Claros:
Detecting and correcting mis-assembled reads in contigs. IWBBIO 2013: 345-351
2010
[c4]
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  - conf/ijcnn/FloridoPROHC10
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Javier Perez-Florido, Héctor Pomares, Ignacio Rojas, José Miguel Urquiza Ortiz, Luis Javier Herrera, Manuel Gonzalo Claros:
Effect of pre-processing methods on microarray-based SVM classifiers in affymetrix genechips. IJCNN 2010: 1-6
[c3]
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  - conf/jbi/Fernandez-PozoGBGACC10
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Noé Fernández-Pozo, Darío Guerrero-Fernández, Rocío Bautista, Josefa Gómez-Maldonado, Concepción Avila, Francisco M. Cánovas, M. Gonzalo Claros:
GENote v.β: A Web Tool Prototype for Annotation of Unfinished Sequences in Non-model Eukaryotes. JBI 2010: 66-71
2009
[c2]
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J. P. Florido, Héctor Pomares, Ignacio Rojas, José C. Calvo, José M. Urquiza, M. Gonzalo Claros:
On Selecting the Best Pre-processing Method for Affymetrix Genechips. IWANN (1) 2009: 845-852
[c1]
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  - conf/iwann/DiazGFCHCD09
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David Díaz, Sergio Gálvez, Juan Falgueras, Juan Antonio Caballero, Pilar Hernández, M. Gonzalo Claros, Gabriel Dorado:
Intuitive Bioinformatics for Genomics Applications: Omega-Brigid Workflow Framework. IWANN (2) 2009: 1084-1091

Parts in Books or Collections

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2008
[p2]
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Juan Falgueras, Antonio J. Lara, Francisco R. Cantón, Guillermo Pérez-Trabado, M. Gonzalo Claros:
SeqTrim - A Validation and Trimming Tool for All Purpose Sequence Reads. Innovations in Hybrid Intelligent Systems 2008: 353-360
[p1]
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  - series/asc/LaraPVDCC08
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Antonio J. Lara, Guillermo Pérez-Trabado, David P. Villalobos, Sara Díaz-Moreno, Francisco R. Cantón, M. Gonzalo Claros:
A Web Tool to Discover Full-Length Sequences - Full-Lengther. Innovations in Hybrid Intelligent Systems 2008: 361-368

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