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ORCIDYi Zhao 0013
Person information
- affiliation: Chinese Academy of Sciences, Institute Of Computing Technology, Bioinformatics Research Group, Beijing, China
Other persons with the same name
- Yi Zhao — disambiguation page
- Yi Zhao 0001 — University of Southampton, UK
- Yi Zhao 0002
![[0000-0002-1765-8787]](https://dblp.org/img/orcid-mark.12x12.png "0000-0002-1765-8787")
— Shenzhen University, College of Mathematics and Statistics, China (and 1 more) - Yi Zhao 0003 — Marvell Semiconductor, Santa Clara, CA, USA (and 1 more)
- Yi Zhao 0004 — Ohio State University, Columbus, OH, USA (and 1 more)
- Yi Zhao 0005 — Georgia State University, Department of Mathematics and Statistics, Atlanta, GA, USA
- Yi Zhao 0006 — Kuaishou Technology, Beijing, China (and 2 more)
- Yi Zhao 0007 — Harbin Institute of Technology, Shenzhen Graduate School, College of Science, China (and 1 more)
- Yi Zhao 0008 — Xiamen University, Department of Chemistry, China
- Yi Zhao 0009 — Hohai University, Department of Geomatics Engineering, Nanjing, China
- Yi Zhao 0010 — Beijing University of Chemical Technology, Beijing Key Laboratory for Health Monitoring and Self-Recovery of High End Mechanical Equipment, China
- Yi Zhao 0011 — Beijing Institute of Technology, China (and 1 more)
- Yi Zhao 0012 — University of Bonn, Germany
- Yi Zhao 0014 — Aalto University, Espoo, Finland
- Yi Zhao 0015 — Zhejiang University, College of Information Science and Electronic Engineering, Hangzhou, China
- Yi Zhao 0016 — Tsinghua University, School of Software, BNRist, Beijing, China
- Yi Zhao 0017 — Uppsala University, Department of Information Technology, Sweden
- Yi Zhao 0018 — Huawei, Shuhai Lab, China (and 1 more)
- Yi Zhao 0019 — Chongqing University of Posts and Telecommunications, School of Communications and Information Engineering, Chongqing, China
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Journal Articles
- 2025
[j32]Haiyan Yue, Yiheng Tang, Aixuan Li, Lili Zhang, Yiwei Niu, Yiming Zhang, Hao Wang, Jianjun Luo, Yi Zhao, Shunmin He, Chang Chen, Runsheng Chen:
Enzyme Repertoires and Genomic Insights into Lycium barbarum Pectin Polysaccharide Biosynthesis. Genom. Proteom. Bioinform. 22(6) (2025)- [j31]Jinhua He, Haitao Luo, Wei Wang, Dechao Bu, Zhengkai Zou, Haolin Wang, Hongzhen Tang, Zeping Han, Wenfeng Luo, Jian Shen, Fangmei Xie, Yi Zhao, Zhiming Xiang:
CIEC: Cross-tissue Immune Cell Type Enrichment and Expression Map Visualization for Cancer. Genom. Proteom. Bioinform. 23(1) (2025) - 2023
- [j30]Lianhe Zhao, Xiaoning Qi, Yang Chen, Yixuan Qiao, Dechao Bu, Yang Wu, Yufan Luo, Sheng Wang, Rui Zhang, Yi Zhao:
Biological knowledge graph-guided investigation of immune therapy response in cancer with graph neural network. Briefings Bioinform. 24(2) (2023) - [j29]Yu Zheng, Huaxia Luo, XueYi Teng, Xinpei Hao, Xiaoyu Yan, Yiheng Tang, Wanyu Zhang, Yuanxin Wang, Peng Zhang, Yanyan Li, Yi Zhao, Runsheng Chen, Shunmin He:
NPInter v5.0: ncRNA interaction database in a new era. Nucleic Acids Res. 51(D1): 232-239 (2023) - 2022
- [j28]Yixuan Qiao, Lianhe Zhao, Chunlong Luo, Yufan Luo, Yang Wu, Shengtong Li, Dechao Bu, Yi Zhao:
Multi-modality artificial intelligence in digital pathology. Briefings Bioinform. 23(6) (2022) - [j27]Feng Xu, Yifan Wang, Yunchao Ling, Chenfen Zhou, Haizhou Wang, Andrew E. Teschendorff, Yi Zhao, Haitao Zhao, Yungang He, Guoqing Zhang, Zhen Yang:
dbDEMC 3.0: Functional Exploration of Differentially Expressed miRNAs in Cancers of Human and Model Organisms. Genom. Proteom. Bioinform. 20(3): 446-454 (2022) - [j26]Jiajia Wang, Yirong Shi, Honghong Zhou, Peng Zhang, Tingrui Song, Zhiye Ying, Haopeng Yu, Yanyan Li, Yi Zhao, Xiaoxi Zeng, Shunmin He, Runsheng Chen:
piRBase: integrating piRNA annotation in all aspects. Nucleic Acids Res. 50(D1): 265-272 (2022) - 2021
- [j25]Haitao Luo, Dechao Bu, Lijuan Shao, Yang Li, Liang Sun, Ce Wang, Jing Wang, Wei Yang, Xiaofei Yang, Jun Dong, Yi Zhao, Furong Li:
Single-cell Long Non-coding RNA Landscape of T Cells in Human Cancer Immunity. Genom. Proteom. Bioinform. 19(3): 377-393 (2021) - [j24]Shuangsang Fang, Lei Dong, Liu Liu, Jincheng Guo, Lianhe Zhao, Jiayuan Zhang, Dechao Bu, Xinkui Liu, Peipei Huo, Wanchen Cao, Qiongye Dong, Jiarui Wu, Xiaoxi Zeng, Yang Wu, Yi Zhao:
HERB: a high-throughput experiment- and reference-guided database of traditional Chinese medicine. Nucleic Acids Res. 49(Database-Issue): D1197-D1206 (2021) - [j23]Lianhe Zhao, Jiajia Wang, Yanyan Li, Tingrui Song, Yang Wu, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Dong Pei, Yu Zheng, Jianqin Huang, Mingqing Xu, Runsheng Chen, Yi Zhao, Shunmin He:
NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants. Nucleic Acids Res. 49(Database-Issue): D165-D171 (2021) - [j22]Yongbiao Xue, Yiming Bao, Zhang Zhang, Wenming Zhao, Jing-Fa Xiao, Shunmin He, Guoqing Zhang, Yixue Li, Guoping Zhao, Runsheng Chen, Shuhui Song, Lina Ma, Dong Zou, Dongmei Tian, Cuiping Li, Junwei Zhu, Zheng Gong, Meili Chen, Anke Wang, Yingke Ma, Mengwei Li, Xufei Teng, Ying Cui, Guangya Duan, Mochen Zhang, Tong Jin, Chengmin Shi, Zhenglin Du, Yadong Zhang, Chuandong Liu, Rujiao Li, Jingyao Zeng, Lili Hao, Shuai Jiang, Hua Chen, Dali Han, Tao Zhang, Wang Kang, Fei Yang, Jing Qu, Weiqi Zhang, Guanghui Liu, Lin Liu, Yang Zhang, Guangyi Niu, Tongtong Zhu, Changrui Feng, Xiaonan Liu, Yuansheng Zhang, Zhao Li, Ruru Chen, Qianpeng Li, Zhongyi Hua, Chao Jiang, Ziyuan Chen, Fangshu He, Yuyang Zhao, Yan Jin, Luqi Huang, Yuan Yuan, Chenfen Zhou, Qingwei Xu, Sheng He, Wei Ye, Ruifang Cao, Pengyu Wang, Yunchao Ling, Xing Yan, Qingzhong Wang, Qiang Du, Wenting Zong, Hongen Kang, Zhuang Xiong, Wendi Huan, Sirui Zhang, Qiguang Xia, Xiaojuan Fan, Zefeng Wang, Xu Chen, Tingting Chen, Sisi Zhang, Bixia Tang, Lili Dong, Zhewen Zhang, Zhonghuang Wang, Hailong Kang, Yanqing Wang, Song Wu, Ming Chen, Chang Liu, Yujia Xiong, Xueying Shao, Yanyan Li, Honghong Zhou, Xiaomin Chen, Yu Zheng, Quan Kang, Di Hao, Lili Zhang, Huaxia Luo, Yajing Hao, Peng Zhang, Zhi Nie, Shuhuan Yu, Jian Sang, Zhaohua Li, Xiangquan Zhang, Qing Zhou, Shuang Zhai, Yaping Zhang, Guodong Wang, Qianghui Zhu, Xin Li, Menghua Li, Jun Yan, Chen Li, Zhennan Wang, Xiangfeng Wang, Yuanming Liu, Hong Luo, Xiaoyuan Wu, Hai-Chun Jing, Lianhe Zhao, Jiajia Wang, Tinrui Song, Yi Zhao, Furrukh Mehmood, Shahid Ali, Amjad Ali, Shoaib Saleem, Irfan Hussain, Amir Ali Abbasi, Zhixiang Zuo, Jian Ren, Xinxin Zhang, Yun Xiao, Xia Li, Yiran Tu, Yu Xue, Wanying Wu, Peifeng Ji, Fangqing Zhao, Xianwen Meng, Di Peng, Hao Luo, Feng Gao, Wanshan Ning, Shaofeng Lin, Teng Liu, An-Yuan Guo, Hao Yuan, Yong E. Zhang, Xiaodan Tan, Weizhi Zhang, Yubin Xie, Chenwei Wang, Chun-Jie Liu, De-Chang Yang, Feng Tian, Ge Gao, Dachao Tang, Lan Yao, Qinghua Cui, Ni A. An, Chuan-Yun Li, Xiaotong Luo:
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Res. 49(Database-Issue): D18-D28 (2021) - [j21]Dechao Bu, Haitao Luo, Peipei Huo, Zhihao Wang, Shan Zhang, Zihao He, Yang Wu, Lianhe Zhao, Jingjia Liu, Jincheng Guo, Shuangsang Fang, Wanchen Cao, Lan Yi, Yi Zhao, Lei Kong:
KOBAS-i: intelligent prioritization and exploratory visualization of biological functions for gene enrichment analysis. Nucleic Acids Res. 49(Webserver-Issue): 317-325 (2021) - [j20]Yuwei Zhang, Dechao Bu, Peipei Huo, Zhihao Wang, Hao Rong, Yanguo Li, Jingjia Liu, Meng Ye, Yang Wu, Zheng Jiang, Qi Liao, Yi Zhao:
ncFANs v2.0: an integrative platform for functional annotation of non-coding RNAs. Nucleic Acids Res. 49(Webserver-Issue): 459-468 (2021) - 2020
- [j19]Zhonghai Li, Yang Zhang, Dong Zou, Yi Zhao, Hou-Ling Wang, Yi Zhang, Xinli Xia, Jingchu Luo, Hongwei Guo, Zhang Zhang:
LSD 3.0: a comprehensive resource for the leaf senescence research community. Nucleic Acids Res. 48(Database-Issue): D1069-D1075 (2020) - [j18]XueYi Teng, Xiaomin Chen, Hua Xue, Yiheng Tang, Peng Zhang, Quan Kang, Yajing Hao, Runsheng Chen, Yi Zhao, Shunmin He:
NPInter v4.0: an integrated database of ncRNA interactions. Nucleic Acids Res. 48(Database-Issue): D160-D165 (2020) - 2019
- [j17]Yang Wu, Feilong Zhang, Kuo Yang, Shuangsang Fang, Dechao Bu, Hui Li, Liang Sun, Hairuo Hu, Kuo Gao, Wei Wang, Xuezhong Zhou, Yi Zhao, Jianxin Chen:
SymMap: an integrative database of traditional Chinese medicine enhanced by symptom mapping. Nucleic Acids Res. 47(Database-Issue): D1110-D1117 (2019) - [j16]Jincheng Guo, Shuangsang Fang, Yang Wu, Jianhua Zhang, Yang Chen, Jing Liu, Bo Wu, Jiarui Wu, Enmin Li, Liyan Xu, Liang Sun, Yi Zhao:
CNIT: a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition. Nucleic Acids Res. 47(Webserver-Issue): W516-W522 (2019) - 2018
- [j15]Shuangsang Fang, LiLi Zhang, Jincheng Guo, Yiwei Niu, Yang Wu, Hui Li, Lianhe Zhao, Xiyuan Li, XueYi Teng, XianHui Sun, Liang Sun, Michael Q. Zhang, Runsheng Chen, Yi Zhao:
NONCODEV5: a comprehensive annotation database for long non-coding RNAs. Nucleic Acids Res. 46(Database-Issue): D308-D314 (2018) - 2017
- [j14]Haitao Luo, Dechao Bu, Liang Sun, Shuangsang Fang, Zhiyong Liu, Yi Zhao:
Identification and function annotation of long intervening noncoding RNAs. Briefings Bioinform. 18(5): 789-797 (2017) - [j13]Zhen Yang, Liangcai Wu, Anqiang Wang, Wei Tang, Yi Zhao, Haitao Zhao, Andrew E. Teschendorff:
dbDEMC 2.0: updated database of differentially expressed miRNAs in human cancers. Nucleic Acids Res. 45(Database-Issue): D812-D818 (2017) - 2016
- [j12]Yajing Hao, Wei Wu, Hui Li, Jiao Yuan, Jianjun Luo, Yi Zhao, Runsheng Chen:
NPInter v3.0: an upgraded database of noncoding RNA-associated interactions. Database J. Biol. Databases Curation 2016 (2016) - [j11]Yi Zhao, Hui Li, Shuangsang Fang, Yue Kang, Wei Wu, Yajing Hao, Ziyang Li, Dechao Bu, Ninghui Sun, Michael Q. Zhang, Runsheng Chen:
NONCODE 2016: an informative and valuable data source of long non-coding RNAs. Nucleic Acids Res. 44(Database-Issue): 203-208 (2016) - 2015
- [j10]Xiaobo Yang, Ming Li, Qi Liu, Yabing Zhang, Junyan Qian, Xueshuai Wan, Anqiang Wang, Haohai Zhang, Chengpei Zhu, Xin Lu, Yilei Mao, Xinting Sang, Haitao Zhao, Yi Zhao, Xiaoyan Zhang:
Dr.VIS v2.0: an updated database of human disease-related viral integration sites in the era of high-throughput deep sequencing. Nucleic Acids Res. 43(Database-Issue): 887-892 (2015) - 2014
- [j9]Chaoyong Xie, Jiao Yuan, Hui Li, Ming Li, Guoguang Zhao, Dechao Bu, Weimin Zhu, Wei Wu, Runsheng Chen, Yi Zhao:
NONCODEv4: exploring the world of long non-coding RNA genes. Nucleic Acids Res. 42(Database-Issue): 98-103 (2014) - [j8]Jiao Yuan, Wei Wu, Chaoyong Xie, Guoguang Zhao, Yi Zhao, Runsheng Chen:
NPInter v2.0: an updated database of ncRNA interactions. Nucleic Acids Res. 42(Database-Issue): 104-108 (2014) - 2012
- [j7]Dechao Bu, Kuntao Yu, Silong Sun, Chaoyong Xie, Geir Skogerbø, Ruoyu Miao, Hui Xiao, Qi Liao, Haitao Luo, Guoguang Zhao, Haitao Zhao, Zhiyong Liu, Changning Liu, Runsheng Chen, Yi Zhao:
NONCODE v3.0: integrative annotation of long noncoding RNAs. Nucleic Acids Res. 40(Database-Issue): 210-215 (2012) - 2011
- [j6]Qi Liao, Hui Xiao, Dechao Bu, Chaoyong Xie, Ruoyu Miao, Haitao Luo, Guoguang Zhao, Kuntao Yu, Haitao Zhao, Geir Skogerbø, Runsheng Chen, Zhongdao Wu, Changning Liu, Yi Zhao:
ncFANs: a web server for functional annotation of long non-coding RNAs. Nucleic Acids Res. 39(Web-Server-Issue): 118-124 (2011) - 2009
- [j5]Xiongying Yuan, Changning Liu, Pengcheng Yang, Shunmin He, Qi Liao, Shuli Kang, Yi Zhao:
Clustered microRNAs' coordination in regulating protein-protein interaction network. BMC Syst. Biol. 3: 65 (2009) - 2008
- [j4]Shunmin He, Changning Liu, Geir Skogerbø, Haitao Zhao, Jie Wang, Tao Liu, Baoyan Bai, Yi Zhao, Runsheng Chen:
NONCODE v2.0: decoding the non-coding. Nucleic Acids Res. 36(Database-Issue): 170-172 (2008) - 2007
- [j3]Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, Haitao Zhao:
antiCODE: a natural sense-antisense transcripts database. BMC Bioinform. 8 (2007) - 2006
- [j2]Tao Wu, Jie Wang, Changning Liu, Yong Zhang, Baochen Shi, Xiaopeng Zhu, Zhihua Zhang, Geir Skogerbø, Lan Chen, Hongchao Lu, Yi Zhao, Runsheng Chen:
NPInter: the noncoding RNAs and protein related biomacromolecules interaction database. Nucleic Acids Res. 34(Database-Issue): 150-152 (2006) - 2005
- [j1]Changning Liu, Baoyan Bai, Geir Skogerbø, Lun Cai, Wei Deng, Yong Zhang, Dongbo Bu, Yi Zhao, Runsheng Chen:
NONCODE: an integrated knowledge database of non-coding RNAs. Nucleic Acids Res. 33(Database-Issue): 112-115 (2005)
Conference and Workshop Papers
- 2024
- [c5]Zhufeng Xu, Jiaxin Qin, Chenhao Li, Dechao Bu, Yi Zhao:
MiHATP:A Multi-hybrid Attention Super-Resolution Network for Pathological Image Based on Transformation Pool Contrastive Learning. MICCAI (7) 2024: 488-497 - 2019
- [c4]Li Xiao, Cheng Zhu, Junjun Liu, Chunlong Luo, Peifang Liu, Yi Zhao:
Learning from Suspected Target: Bootstrapping Performance for Breast Cancer Detection in Mammography. MICCAI (6) 2019: 468-476 - [c3]Li Xiao, Chunlong Luo, Yufan Luo, Tianqi Yu, Chan Tian, Jie Qiao, Yi Zhao:
DeepACE: Automated Chromosome Enumeration in Metaphase Cell Images Using Deep Convolutional Neural Networks. MICCAI (1) 2019: 595-603 - 2007
- [c2]Huan Chen, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun:
United-FS: A Logical File System Providing a Single Image of Multiple Physical File Systems on NFS Server. IPDPS 2007: 1-7 - 2006
- [c1]Huan Chen, Rongfeng Tang, Yi Zhao, Jin Xiong, Jie Ma, Ninghui Sun:
Research on Key Technologies of Load Balancing for NFS Server with Multiple Network Paths. GCC Workshops 2006: 407-411
Data and Artifacts
- 2024
- [d2]Xiaoning Qi, Lianhe Zhao, Yi Zhao:
Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery. Version 1.0. Zenodo, 2024 [all versions]
- [d1]Xiaoning Qi, Lianhe Zhao, Yi Zhao:
Predicting transcriptional responses to novel chemical perturbations using deep generative model for drug discovery. Version 2. Zenodo, 2024 [all versions]
Informal and Other Publications
- 2020
- [i3]Li Xiao, Cheng Zhu, Junjun Liu, Chunlong Luo, Peifang Liu, Yi Zhao:
Learning from Suspected Target: Bootstrapping Performance for Breast Cancer Detection in Mammography. CoRR abs/2003.01109 (2020) - [i2]Li Xiao, Yufan Luo, Chunlong Luo, Lianhe Zhao, Quanshui Fu, Guoqing Yang, Anpeng Huang, Yi Zhao:
PBRnet: Pyramidal Bounding Box Refinement to Improve Object Localization Accuracy. CoRR abs/2003.04541 (2020) - 2019
- [i1]Li Xiao, Chunlong Luo, Yufan Luo, Tianqi Yu, Chan Tian, Jie Qiao, Yi Zhao:
DeepACE: Automated Chromosome Enumeration in Metaphase Cell Images Using Deep Convolutional Neural Networks. CoRR abs/1910.11091 (2019)
Coauthor Index
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