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ORCIDHenry C. M. Leung
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2020 – today
- 2020
[c31]Wui Wang Lui, Amy Wing-Sze Leung, Henry C. M. Leung, Yan Xin, Jade L. L. Teng, Patrick C. Y. Woo, Tak Wah Lam, Ruibang Luo
:
MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read Metagenomics. BIBM 2020: 329-336
2010 – 2019
- 2019
- [j25]Miao-Xin Li, Lin Jiang, Timothy Shin Heng Mak, Johnny S. H. Kwan, Chao Xue, Peikai Chen, Henry Chi-Ming Leung, Liqian Cui, Tao Li, Pak Chung Sham:
A powerful conditional gene-based association approach implicated functionally important genes for schizophrenia. Bioinform. 35(4): 628-635 (2019) - [c30]Ye Wu, Ruibang Luo, Henry C. M. Leung, Hing-Fung Ting, Tak Wah Lam:
RENET: A Deep Learning Approach for Extracting Gene-Disease Associations from Literature. RECOMB 2019: 272-284 - 2018
- [j24]Huijun Mai, Yifan Zhang, Dinghua Li, Henry Chi-Ming Leung, Ruibang Luo, Chi-Kwong Wong, Hing-Fung Ting, Tak Wah Lam:
AC-DIAMOND v1: accelerating large-scale DNA-protein alignment. Bioinform. 34(21): 3744-3746 (2018) - [c29]Dinghua Li, Henry Chi-Ming Leung, Chi-Kwong Wong, Yifan Zhang, Wai-Chun Law, Yan Xin, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam:
MegaPath: Low-Similarity Pathogen Detection from Metagenomic NGS Data (Extended Abstract). ICCABS 2018: 1 - 2017
- [j23]Dinghua Li, Yukun Huang, Henry C. M. Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam:
MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs. BMC Bioinform. 18(S-12): 67-75 (2017) - [c28]Jie Yang, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
Mixed Membership Sparse Gaussian Conditional Random Fields. ADMA 2017: 287-302 - 2016
- [c27]Huijun Mai, Dinghua Li, Yifan Zhang, Henry Chi-Ming Leung, Ruibang Luo, Hing-Fung Ting, Tak Wah Lam:
AC-DIAMOND: Accelerating Protein Alignment via Better SIMD Parallelization and Space-Efficient Indexing. IWBBIO 2016: 426-433 - 2015
- [j22]Xiao Zhu, Henry C. M. Leung, Rongjie Wang, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Yajie Li, Rui Zhang, Qinghua Jiang, Bo Liu, Yucui Dong, Guohui Zhou, Yadong Wang:
misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads. BMC Bioinform. 16: 386:1-386:16 (2015) - [j21]Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
IDBA-MTP: A Hybrid Metatranscriptomic Assembler Based on Protein Information. J. Comput. Biol. 22(5): 367-376 (2015) - 2014
- [j20]Yi Wang, Henry Chi-Ming Leung, Siu-Ming Yiu, Francis Y. L. Chin:
MetaCluster-TA: taxonomic annotation for metagenomic data based on assembly-assisted binning. BMC Genom. 15(S-1): S12 (2014) - [c26]Jianyu Shi, Siu-Ming Yiu, Yiming Li, Henry C. M. Leung, Francis Y. L. Chin:
Predicting drug-target interaction for new drugs using enhanced similarity measures and super-target clustering1. BIBM 2014: 45-50 - [c25]Jie Yang, Henry C. M. Leung, Siu-Ming Yiu, Yunpeng Cai, Francis Y. L. Chin:
Learning Sparse Gaussian Bayesian Network Structure by Variable Grouping. ICDM 2014: 1073-1078 - [c24]Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
IDBA-MTP: A Hybrid MetaTranscriptomic Assembler Based on Protein Information. RECOMB 2014: 160-172 - 2013
- [j19]Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Ming-Ju Lv, Xin-Guang Zhu, Francis Y. L. Chin:
IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels. Bioinform. 29(13): 326-334 (2013) - [j18]Henry C. M. Leung, Siu-Ming Yiu, John Parkinson, Francis Y. L. Chin:
IDBA-MT: De Novo Assembler for Metatranscriptomic Data Generated from Next-Generation Sequencing Technology. J. Comput. Biol. 20(7): 540-550 (2013) - [j17]Ming-Yang Kao, Henry C. M. Leung, He Sun, Yong Zhang:
Deterministic polynomial-time algorithms for designing short DNA words. Theor. Comput. Sci. 494: 144-160 (2013) - [j16]Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu:
Non-adaptive complex group testing with multiple positive sets. Theor. Comput. Sci. 505: 11-18 (2013) - [c23]Xiao Zhu, Henry C. M. Leung, Francis Y. L. Chin, Siu-Ming Yiu, Guangri Quan, Bo Liu, Yadong Wang:
PERGA: A Paired-End Read Guided De Novo Assembler for Extending Contigs Using SVM Approach. BCB 2013: 161 - [c22]Jie Yang, Henry C. M. Leung, Siu-Ming Yiu, Yunpeng Cai, Francis Y. L. Chin:
Intra- and inter-sparse multiple output regression with application on environmental microbial community study. BIBM 2013: 404-409 - [c21]Hoa Vu, Francis Y. L. Chin, Wing-Kai Hon, Henry C. M. Leung, Kunihiko Sadakane, Ken Wing-Kin Sung, Siu-Ming Yiu:
Reconstructing k-Reticulated Phylogenetic Network from a Set of Gene Trees. ISBRA 2013: 112-124 - 2012
- [j15]Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth. Bioinform. 28(11): 1420-1428 (2012) - [j14]Yi Wang, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
MetaCluster 5.0: a two-round binning approach for metagenomic data for low-abundance species in a noisy sample. Bioinform. 28(18): 356-362 (2012) - [j13]Yi Wang, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
MetaCluster 4.0: A Novel Binning Algorithm for NGS Reads and Huge Number of Species. J. Comput. Biol. 19(2): 241-249 (2012) - [c20]Junjie Yu, Henry Chi-Ming Leung, Siu-Ming Yiu, Yong Zhang, Francis Y. L. Chin, Nathan Hobbs, Amy Y. X. Wang:
Phylogenetic Tree Reconstruction with Protein Linkage. ISBRA 2012: 315-327 - [i1]Ming-Yang Kao, Henry C. M. Leung, He Sun, Yong Zhang:
Deterministic Polynomial-Time Algorithms for Designing Short DNA Words. CoRR abs/1201.6358 (2012) - 2011
- [j12]Henry C. M. Leung, Siu-Ming Yiu, Bin Yang, Yu Peng, Yi Wang, Zhihua Liu, Jing-Chi Chen, Junjie Qin, Ruiqiang Li, Francis Y. L. Chin:
A robust and accurate binning algorithm for metagenomic sequences with arbitrary species abundance ratio. Bioinform. 27(11): 1489-1495 (2011) - [j11]Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
Meta-IDBA: a de Novo assembler for metagenomic data. Bioinform. 27(13): 94-101 (2011) - [c19]Henry Chi-Ming Leung, Shuen-Yi Leung, Carlos Lu Xiang, Siu-Ming Yiu, Francis Yuk-Lun Chin:
DMPFinder - Finding Differentiating Pathways with Gaps from Two Groups of Metabolic Networks. BICoB 2011: 80-85 - [c18]Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu:
Adaptive Phenotype Testing for AND/OR Items. ISAAC 2011: 754-763 - [c17]Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome - (Extended Abstract). RECOMB 2011: 337-338 - [c16]Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu:
Non-adaptive Complex Group Testing with Multiple Positive Sets. TAMC 2011: 172-183 - 2010
- [j10]Bin Yang, Yu Peng, Henry Chi-Ming Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Yuk-Lun Chin:
Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. BMC Bioinform. 11(S-2): 5 (2010) - [c15]Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Junjie Qin, Ruiqiang Li, Francis Y. L. Chin:
MetaCluster: unsupervised binning of environmental genomic fragments and taxonomic annotation. BCB 2010: 170-179 - [c14]Shuen-Yi Leung, Henry C. M. Leung, Carlos Lu Xiang, Siu-Ming Yiu, Francis Y. L. Chin:
Predicting metabolic pathways from metabolic networks with limited biological knowledge. BIBM Workshops 2010: 7-12 - [c13]Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Francis Y. L. Chin:
IDBA - A Practical Iterative de Bruijn Graph De Novo Assembler. RECOMB 2010: 426-440 - [c12]Ming-Yang Kao, Henry C. M. Leung, He Sun, Yong Zhang:
Deterministic Polynomial-Time Algorithms for Designing Short DNA Words. TAMC 2010: 308-319
2000 – 2009
- 2009
- [j9]Francis Y. L. Chin, Henry C. M. Leung, Wei-Lin Li, Siu-Ming Yiu:
Finding optimal threshold for correction error reads in DNA assembling. BMC Bioinform. 10(S-1) (2009) - [j8]Henry Chi-Ming Leung, Man-Hung Siu, Siu-Ming Yiu, Francis Yuk-Lun Chin, Ken Wing-Kin Sung:
Clustering-Based Approach for Predicting Motif Pairs from protein Interaction Data. J. Bioinform. Comput. Biol. 7(4): 701-716 (2009) - [j7]Henry C. M. Leung, Qian Xiang, Siu-Ming Yiu, Francis Y. L. Chin:
Predicting Protein Complexes from PPI Data: A Core-Attachment Approach. J. Comput. Biol. 16(2): 133-144 (2009) - [c11]Bin Yang, Yu Peng, Henry C. M. Leung, Siu-Ming Yiu, Jing-Chi Chen, Francis Y. L. Chin:
Unsupervised binning of environmental genomic fragments based on an error robust selection of l-mers. DTMBIO 2009: 3-10 - 2008
- [j6]Francis Y. L. Chin, Henry C. M. Leung:
DNA Motif Representation with Nucleotide Dependency. IEEE ACM Trans. Comput. Biol. Bioinform. 5(1): 110-119 (2008) - [c10]Francis Y. L. Chin, Henry C. M. Leung, Man-Hung Siu, Siu-Ming Yiu:
Optimal Algorithm for Finding DNA Motifs with Nucleotide Adjacent Dependency. APBC 2008: 343-352 - 2007
- [c9]Henry C. M. Leung, Francis Y. L. Chin, Bethany Man-Yee Chan:
Discovering Motifs With Transcription Factor Domain Knowledge. Pacific Symposium on Biocomputing 2007: 472-483 - [c8]Francis Y. L. Chin, Henry C. M. Leung, Wing-Kin Sung, Siu-Ming Yiu:
The Point Placement Problem on a Line - Improved Bounds for Pairwise Distance Queries. WABI 2007: 372-382 - 2006
- [b1]Henry C. M. Leung:
Motif discovery for DNA sequences. University of Hong Kong, 2006 - [j5]Henry C. M. Leung, Francis Y. L. Chin:
Finding motifs from all sequences with and without binding sites. Bioinform. 22(18): 2217-2223 (2006) - [j4]Henry C. M. Leung, Francis Y. L. Chin:
An efficient motif discovery algorithm with unknown motif length and number of binding sites. Int. J. Data Min. Bioinform. 1(2): 201-215 (2006) - [j3]Henry C. M. Leung, Francis Y. L. Chin:
Algorithms for Challenging Motif Problems. J. Bioinform. Comput. Biol. 4(1): 43-58 (2006) - [j2]Giovanni de Marco, Monique de Bonis, P. Vrignaud, Henry C. M. Leung, I. Peretti:
Changes in effective connectivity during incidental and intentional perception of fearful faces. NeuroImage 30(3): 1030-1037 (2006) - [c7]Francis Y. L. Chin, Henry C. M. Leung:
An Efficient Algorithm for String Motif Discovery. APBC 2006: 79-88 - [c6]Henry C. M. Leung, Francis Y. L. Chin:
Discovering DNA Motifs with Nucleotide Dependency. BIBE 2006: 70-80 - 2005
- [j1]Henry C. M. Leung, Francis Y. L. Chin, Siu-Ming Yiu, Ronald Rosenfeld, Wai Wan Tsang:
Finding Motifs with Insufficient Number of Strong Binding Sites. J. Comput. Biol. 12(6): 686-701 (2005) - [c5]Francis Y. L. Chin, Henry C. M. Leung:
Voting algorithms for discovering long motifs. APBC 2005: 261-271 - [c4]Henry C. M. Leung, Francis Y. L. Chin:
An Efficient Algorithm for the Extended (l, d)-Motif Problem with Unknown Number of Binding Sites. BIBE 2005: 11-18 - [c3]Henry C. M. Leung, Francis Y. L. Chin:
Finding exact optimal motifs in matrix representation by partitioning. ECCB/JBI 2005: 92 - [c2]Henry C. M. Leung, Francis Y. L. Chin:
Generalized Planted (l, d)-Motif Problem with Negative Set. WABI 2005: 264-275 - 2004
- [c1]Francis Y. L. Chin, Henry C. M. Leung, Siu-Ming Yiu, Tak Wah Lam, Roni Rosenfeld, Wai Wan Tsang, David K. Smith, Y. Jiang:
Finding motifs for insufficient number of sequences with strong binding to transcription facto. RECOMB 2004: 125-132
Coauthor Index
aka: Francis Yuk-Lun Chin
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