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BIBM 2014: Belfast, United Kingdom
- Huiru Jane Zheng, Werner Dubitzky, Xiaohua Hu, Jin-Kao Hao, Daniel P. Berrar, Kwang-Hyun Cho, Yadong Wang, David R. Gilbert:
2014 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2014, Belfast, United Kingdom, November 2-5, 2014. IEEE Computer Society 2014, ISBN 978-1-4799-5669-2 - Veronika Strnadova, Aydin Buluç
, Jarrod Chapman, John R. Gilbert, Joseph Gonzalez
, Stefanie Jegelka, Daniel Rokhsar
, Leonid Oliker:
Efficient and accurate clustering for large-scale genetic mapping. 3-10 - Zhexue Wei, Daming Zhu, Lusheng Wang
:
A parameterized algorithm for (1, 2)-exemplar breakpoint distance. 11-16 - Mingjie Wang, Haixu Tang, Yuzhen Ye:
Identification and characterization of accessory genomes in bacterial species based on genome comparison and metagenomic recruitment. 17-24 - Haiying Wang, Huiru Zheng
, Fiona Browne
, Chaoyang Wang:
Minimum dominating sets in cell cycle specific protein interaction networks. 25-30 - Lin Zhu, Suping Deng, De-Shuang Huang:
A two-stage geometric method for detecting unreliable links in protein-protein networks. 31-36 - Didier Devaurs
, Amarda Shehu, Thierry Siméon, Juan Cortés:
Sampling-based methods for a full characterization of energy landscapes of small peptides. 37-44 - Jianyu Shi, Siu-Ming Yiu, Yiming Li, Henry C. M. Leung, Francis Y. L. Chin:
Predicting drug-target interaction for new drugs using enhanced similarity measures and super-target clustering1. 45-50 - Benjamin P. Vandervalk, Shaun D. Jackman
, Anthony Raymond, Hamid Mohamadi, Chen Yang, Dean A. Attali
, Justin Chu, René L. Warren, Inanç Birol:
Konnector: Connecting paired-end reads using a bloom filter de Bruijn graph. 51-58 - Pietro Hiram Guzzi, Giuseppe Agapito
, Maria Teresa Di Martino
, Mariamena Arbitrio
, Pierfrancesco Tassone
, Pierosandro Tagliaferri, Mario Cannataro
:
DMET-miner: Efficient learning of association rules from genotyping data for personalized medicine. 59-62 - Diyue Bu, Haixu Tang:
Quasispecies reconstruction based on vertex coloring algorithms. 63-66 - Caihua Wang, Juan Liu, Fei Luo, Yafang Tan, Zixin Deng, Qian-Nan Hu:
Pairwise input neural network for target-ligand interaction prediction. 67-70 - Bassam AlKindy
, Christophe Guyeux
, Jean-François Couchot, Michel Salomon
, Jacques M. Bahi:
Gene similarity-based approaches for determining core-genes of chloroplasts. 71-74 - Xiujuan Lei, Fang-Xiang Wu
, Fei Wang
, Aidong Zhang:
Detecting functional modules in dynamic protein-protein interaction networks using Markov Clustering and Firefly Algorithm. 75-81 - Subrata Saha, Sanguthevar Rajasekaran:
Efficient algorithms for the compression of FASTQ files. 82-85 - Xiao Wang, Guo-Zheng Li, Qiuwen Zhang, Deshuang Huang:
MultiP-SChlo: Multi-label protein subchloroplast localization prediction. 86-89 - Guillaume Fertin
, Géraldine Jean, Andreea Radulescu, Irena Rusu:
DExTaR: Detection of exact tandem repeats based on the de Bruijn graph. 90-93 - Nicolas Maillet, Guillaume Collet, Thomas Vannier, Dominique Lavenier, Pierre Peterlongo:
Commet: Comparing and combining multiple metagenomic datasets. 94-98 - Ilona Kifer, Amir Ben-Dor, Zohar Yakhini
, Rui Mamede Branca, Janne Lehtiö, Ping Xu:
Optimizing analytical depth and cost efficiency of IEF-LC/MS proteomics. 99-106 - Xinran Yu, Turgay Korkmaz, Timothy G. Lilburn, Hong Cai, Jianying Gu, Yufeng Wang:
Heavy path mining reveals novel protein-protein associations in the malaria parasite plasmodium falciparum. 107-112 - Chang Sik Kim, Qing Wen
, Shu-Dong Zhang:
Integrative analysis of chemo-transcriptomic profiles for drug-feature specific gene expression signatures. 113-118 - Wooyoung Kim, Sheil Kurmar:
Efficient updates of network motif instances in the extended protein-protein interaction network. 119-124 - En-Shiun Annie Lee, Kwong-Sak Leung, Ho-Yin Sze-To, Terrence Chi-Kong Lau
, Man Hon Wong, Andrew K. C. Wong:
Discovering protein-DNA binding cores by aligned pattern clustering. 125-130 - Osamu Maruyama, Shota Shikita:
A scale-free structure prior for Bayesian inference of Gaussian graphical models. 131-138 - Chang Sik Kim, Seungwoo Hwang, Shu-Dong Zhang:
RMA with quantile normalization mixes biological signals between different sample groups in microarray data analysis. 139-143 - Fengying Yu, Zhihao Yang, Xiaohua Hu, Yuanyuan Sun, Hongfei Lin, Jian Wang:
Data integration and supervised learning based protein complex detection method. 144-149 - Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu
:
NovoPair: De novo peptide sequencing for tandem mass spectra pair. 150-155 - Mehmet Tan
:
Drug sensitivity prediction for cancer cell lines based on pairwise kernels and miRNA profiles. 156-161 - Kimin Oh, Taeho Hwang, Kihoon Cha, Gwan-Su Yi:
Functional module-centric interpretation of transcriptomic change between human and chimpanzee cerebral cortex. 162-167 - Changlin Fu, Zhou Tan, Rui Liu
, Shiying Hao
, Zhen Li, Pei Chen, Taichang Jang, Milton Merchant, John C. Whitin, Oxford Wang, Minyi Guo, Harvey J. Cohen, Lawrence Recht, Xuefeng Bruce Ling:
CSF protein dynamic driver network: At the crossroads of brain tumorigenesis. 168-175 - Ruimin Sun, Ye Tian, Xin Chen:
TAMeBS: A sensitive bisulfite-sequencing read mapping tool for DNA methylation analysis. 176-181 - Haijun Gong
, Lu Feng:
Probabilistic verification of ER stress-induced signaling pathways. 182-187 - Sheehan Khan, Russell Greiner:
Budgeted transcript discovery: A framework for joint exploration and validation studies. 188-191 - Xiaoxia Liu, Zhihao Yang, Ziwei Zhou, Yuanyuan Sun, Hongfei Lin, Jian Wang:
Exploring the relation between the characteristics of protein interaction networks and the performances of computational complex detection methods. 192 - Yongkang Kim
, Taesung Park:
Identifying differentially expressed genes for ordinal phenotypes. 193-196 - Bolin Chen, Min Li, Jianxin Wang, Fang-Xiang Wu
:
A logistic regression based algorithm for identifying human disease genes. 197-200 - Jungrim Kim, Youngmi Yoon, Sanghyun Park, Jaegyoon Ahn, Yunku Yeu
:
Discovering phenotype specific gene module using a novel biclustering algorithm in colorectal cancer. 201-204 - Yang Bai, Shufan Ji, Yadong Wang:
ESclassifier: A random forest classifier for detection of exon skipping events from RNA-Seq data. 205-208 - Amrisha Bhosle
, Nagasuma Chandra
:
Different cancer cell lines resistant to the same drug exhibit differences in folate pathway dynamics. 209-213 - Yiming Zuo, Guoqiang Yu, Chi Zhang, Habtom W. Ressom:
A new approach for multi-omic data integration. 214-217 - Aiping Qu
, Jiamei Chen
, Linwei Wang, Jingping Yuan, Fang Yang, Qingming Xiang, Ninu Maskey, Guifang Yang, Juan Liu, Yan Li:
Two-step segmentation of Hematoxylin-Eosin stained histopathological images for prognosis of breast cancer. 218-223 - Quazi Abidur Rahman, Larisa G. Tereshchenko
, Matthew Kongkatong, Theodore Abraham, M. Roselle Abraham, Hagit Shatkay:
Identifying hypertrophic cardiomyopathy patients by classifying individual heartbeats from 12-lead ECG signals. 224-229 - Haider Raza
, Girijesh Prasad
, Yuhua Li, Hubert Cecotti:
Covariate shift-adaptation using a transductive learning model for handling non-stationarity in EEG based brain-computer interfaces. 230-236 - Rudan Xu, Yuanyuan Sun, Zhihao Yang, Bo Song, Xiaopeng Hu:
Fractal descriptor applied to the classification of HEp-2 cell patterns. 237-241 - Minghong Fang, Xiaohua Hu, Tingting He, Yan Wang, Junmin Zhao, Xianjun Shen, Jie Yuan
:
Prioritizing disease-causing genes based on network diffusion and rank concordance. 242-247 - Christopher Ma, Yixin Chen, Dawn Wilkins:
Ranking of cancer genes in Markov chain model through integration of heterogeneous sources of data. 248-253 - Aidan D. Meade, Colin Clarke
, Hugh J. Byrne
, Fiona M. Lyng
:
Selection of preprocessing methodology for multivariate regression of cellular FTIR and Raman spectra in radiobiological analyses. 254-260 - Ines V. Rodrigues, Pedro M. Ferreira
, Ana R. Malheiro, Pedro Brites
, Eduardo Marques Pereira, Hélder P. Oliveira
:
Morphometric analysis of sciatic nerve images: A directional gradient approach. 261-266 - Basak Esin Köktürk
, Bilge Karaçali:
Model-free expectation maximization for divisive hierarchical clustering of multicolor flow cytometry data. 267-272 - Min-Seok Kwon, Yongkang Kim
, Seungyeoun Lee, Junghyun Namkung, Taegyun Yun, Sung-Gon Yi, Sangjo Han, Meejoo Kang
, Sun Whe Kim, Jin-Young Jang, Taesung Park:
Biomarker development for pancreatic ductal adenocarcinoma using integrated analysis of mRNA and miRNA expression. 273-278 - Matthias Becker, Nadia Magnenat-Thalmann
:
Muscle tissue labeling of human lower extremities in multi-channel mDixon MR imaging: Concepts and applications. 279-284 - SeungHeui Ryu, NaHyun Kwak, Do-Hoon Lee:
VISWES: A system for finding related vaccinia virus protein sequences in cancer immune therapy. 285-288 - Daekeun You, Sameer K. Antani
, Dina Demner-Fushman, George R. Thoma:
Biomedical image segmentation for semantic visual feature extraction. 289-292 - Diogo Pernes
, Jaime S. Cardoso
, Hélder P. Oliveira
:
Fitting of superquadrics for breast modelling by geometric distance minimization. 293-296 - Hui-Hui Li
, Feng-Feng Shao, Guo-Zheng Li:
Semi-supervised imputation for microarray missing value estimation. 297-300 - Pedro Costa, João P. Monteiro
, Hooshiar Zolfagharnasab
, Hélder P. Oliveira
:
Tessellation-based coarse registration method for 3D reconstruction of the female torso. 301-306 - Zhipeng Jiang, Fangfang Zhao, Yi Guan:
Developing a linguistically annotated corpus of Chinese electronic medical record. 307-310 - Junmin Zhao, Tingting He, Xiaohua Hu, Yan Wang, Xianjun Shen, Minghong Fang, Jie Yuan
:
A novel disease gene prediction method based on PPI network. 311-314 - Nancy A. Huang, Yen-Jen Oyang:
Microbial abundance patterns of host obesity inferred by the structural incorporation of association measures into interpretable classifiers. 315-319 - Qinmin Vivian Hu, Liang He, Mingyao Li, Jimmy Xiangji Huang
, E. Mark Haacke:
A semi-informative aware approach using topic model for medical search. 320-324 - Sílvia Bessa
, Inês Domingues
, Jaime S. Cardoso
, Pedro Passarinho, Pedro Cardoso, Vitor Rodrigues, Fernando Lage:
Normal breast identification in screening mammography: A study on 18 000 images. 325-330 - Hong Song, Qian Zhang, Shuliang Wang
:
Liver segmentation based on SKFCM and improved GrowCut for CT images. 331-334 - Darren O'Doherty, Yogesh Kumar Meena, Haider Raza
, Hubert Cecotti, Girijesh Prasad
:
Exploring gaze-motor imagery hybrid brain-computer interface design. 335-339 - Jiangwen Sun, Jinbo Bi, Henry R. Kranzler:
Identifying heritable composite traits from multivariate phenotypes and genome-wide SNPs. 340-343 - Kaidi Ma, Marco Canepa
, James B. Strait, Hagit Shatkay:
Using unsupervised learning to determine risk level for left ventricular diastolic dysfunction. 344-347 - Moumita Bhattacharya, Deborah Ehrenthal, Hagit Shatkay:
Identifying growth-patterns in children by applying cluster analysis to electronic medical records. 348-351 - Sudeep Roy
, Akhil Kumar
, Ivo Provazník
:
Virtual screening, ADMET profiling, molecular docking and dynamics approaches to search for potent selective natural molecule based inhibitors against metallothionein-III to study Alzheimer's disease. 352-356 - Benjamin Yee Shing Li, Lam Fat Yeung
, Genke Yang:
Pathogen host interaction prediction via matrix factorization. 357-362 - Trevor DeVore, Scott Winkleblack, Bruce L. Golden, Chris Lupo
:
A heterogeneous compute solution for optimized genomic selection analysis. 363-370 - Daniel Veltri
, Uday Kamath, Amarda Shehu:
A novel method to improve recognition of antimicrobial peptides through distal sequence-based features. 371-378 - Lishuang Li, Rui Guo, Zhenchao Jiang, Degen Huang:
Improving Kernel-based protein-protein interaction extraction by unsupervised word representation. 379-384 - Fiona Browne
, Haiying Wang
, Huiru Zheng
:
An integrative network-driven pipeline for the prioritization of Alzheimer's disease genes. 385-390 - Yongguo Mei, Adria Carbo, Raquel Hontecillas, Stefan Hoops, Nathan Liles, Pinyi Lu, Casandra W. Philipson, Josep Bassaganya-Riera:
ENISI MSM: A novel multi-scale modeling platform for computational immunology. 391-396 - Qiang Yu, Hongwei Huo
, Xiaoyang Chen, Haitao Guo, Jeffrey Scott Vitter
, Jun Huan:
An efficient motif finding algorithm for large DNA data sets. 397-402 - Qiao Wang, Fan Shi, Andrew Kowalczyk, Richard M. Campbell, Benjamin Goudey
, Dave Rawlinson
, Aaron Harwood
, Herman L. Ferrá, Adam Kowalczyk:
GWISFI: A universal GPU interface for exhaustive search of pairwise interactions in case-control GWAS in minutes. 403-409 - Michael Andel, Jirí Kléma
, Zdenek Krejcík:
Network-constrained forest for regularized omics data classification. 410-417 - Xingpeng Jiang, Xiaohua Hu:
Microbiome data integration by robust similarity network fusion. 418-423 - Alexander Schöll, Claus Braun, Markus Daub, Guido Schneider, Hans-Joachim Wunderlich:
Adaptive parallel simulation of a two-timescale model for apoptotic receptor-clustering on GPUs. 424-431 - Ana Stanescu
, Doina Caragea
:
Ensemble-based semi-supervised learning approaches for imbalanced splice site datasets. 432-437 - Peiyan Zhu, Junhui Shen, Dezhi Sun, Ke Xu:
Mining meaningful topics from massive biomedical literature. 438-443 - Mengwen Liu, Yuan Ling, Yuan An, Xiaohua Hu:
Relation extraction from biomedical literature with minimal supervision and grouping strategy. 444-449 - Aron Henriksson, Hercules Dalianis, Stewart Kowalski:
Generating features for named entity recognition by learning prototypes in semantic space: The case of de-identifying health records. 450-457 - Yue Zhang, Kuanquan Wang, Henggui Zhang, Yongfeng Yuan, Wei Wang:
Simulation of ventricular automaticity induced by reducing inward-rectifier K+ current. 458-462 - Hongfei Cao, Michael Phinney, Devin Petersohn, Benjamin Merideth, Chi-Ren Shyu:
MRSMRS: Mining repetitive sequences in a MapReduce setting. 463-470 - Yongnan Li, Limin Xiao:
Arithmetic computation using self-assembly of DNA tiles: Integer power over finite field GF(2n). 471-475 - Guang Zheng, Tong Wei, Changsheng Ma, Jianjun Liu, Jinyu Liu, Cheng Lu, Aiping Lu:
Exploring potential therapeutic agents of Duhuo-Jisheng-Tang for rheumatoid arthritis. 476-479 - Yuexu Jiang, Yan Wang, Wei Pang
, Liang Chen, Huiyan Sun, Yanchun Liang, Enrico Blanzieri
:
Essential protein identification based on essential protein-protein interaction prediction by integrated edge weights. 480-483 - Sultan Imangaliyev, Bart Keijser, Wim Crielaard, Evgeni Tsivtsivadze:
Personalized microbial network inference via co-regularized spectral clustering. 484-488 - Shuhua Chen, Juan Liu, Tao Zeng:
MMSE: A generalized coherence measure for identifying linear patterns. 489-492 - Lishuang Li, Liuke Jin, Jieqiong Zheng, Panpan Zhang, Degen Huang:
The Protein-Protein Interaction extraction based on full texts. 493-496 - Lishuang Li, Zhenchao Jiang, Degen Huang:
A general instance representation architecture for protein-protein interaction extraction. 497-500 - Nic Herndon
, Karthik Tangirala, Doina Caragea
:
Predicting protein localization using a domain adaptation na¨ıve Bayes classifier with burrows wheeler transform features. 501-504 - Xiaofang Wu, Zhihao Yang, Zhiheng Li, Yuanyuan Sun, Hongfei Lin, Jian Wang:
Deep graph search based disease related knowledge summarization from biomedical literature. 505 - Quangang Zheng, Haidong Lan, Weiguo Liu:
XPFS: A new parallel PROSITE profile search algorithm on Xeon Phi. 506-509 - Alexandru E. Mizeranschi
, Paul Thompson, Huiru Zheng
, Werner Dubitzky:
A multi-model reverse-engineering algorithm for large gene regulation networks. 510-514 - Yuan Ling, Yuan An, Xiaohua Hu:
A matching framework for modeling symptom and medication relationships from clinical notes. 515-520 - Chun-Fu Wang, Jianping Kelvin Li, Kwan-Liu Ma, Chih-Wei Huang
, Yu-Chuan Li
:
A visual analysis approach to cohort study of electronic patient records. 521-528 - Yun Su, Bin Hu, Lixin Xu, Hanshu Cai, Philip Moore, Xiaowei Zhang, Jing Chen:
EmotionO+: Physiological signals knowledge representation and emotion reasoning model for mental health monitoring. 529-535 - Jing Zhao, Aron Henriksson, Lars Asker, Henrik Boström:
Detecting adverse drug events with multiple representations of clinical measurements. 536-543 - David Rodriguez, Stephan Heuer, Alexandre Guerra, Wilhelm Stork, Benedikt Weber, Markus Eichler:
Towards automatic sensor-based triage for individual remote monitoring during mass casualty incidents. 544-551 - Zehui He, Jiqian Fang, Yuantao Hao, Jianting Tao:
Construct validity of the Chinese version of WHOQOL-BREF & Disabilities module in 1000 adults with disabilities: An Item Response Theory analysis. 552-555 - Zhaohui Liang
, Gang Zhang, Jimmy Xiangji Huang
, Qinmin Vivian Hu:
Deep learning for healthcare decision making with EMRs. 556-559 - Jia-Ming Liu, Mingyu You, Zheng Wang, Guo-Zheng Li, Xianghuai Xu, Zhongmin Qiu:
Cough detection using deep neural networks. 560-563 - Athanasia Polychronopoulou, Zoran Obradovic:
Hospital pricing estimation by Gaussian conditional random fields based regression on graphs. 564-567 - Shuo Xu, Guixin Wu, Qijie Zhao, Dawei Tu, Huiru Zheng
:
Human-machine-environment cyber-physical system and hierarchical task planning to support independent living. 568-573 - Qian Zhu
, Hongfang Liu, Christopher G. Chute, Matthew Ferber:
Genetic testing knowledge base (GTKB) towards individualized genetic test recommendation - An experimental study. 574-577 - Yizhou Zang, Yuan An, Xiaohua Tony Hu:
Automatically recommending healthy living programs to patients with chronic diseases through hybrid content-based and collaborative filtering. 578-582 - Keith Feldman
, Nitesh V. Chawla
:
Admission duration model for infant treatment (ADMIT). 583-587 - Robert E. Schuler
, Carl Kesselman
, Karl Czajkowski
:
Digital asset management for heterogeneous biomedical data in an era of data-intensive science. 588-592 - Fan Yang, Xiaohui Yu
, George Karypis
:
Signaling adverse drug reactions with novel feature-based similarity model. 593-596 - Xi Wen, Hong Wang, Weiming Zhai:
Automatic and fast registration method for image-guided surgery. 597-600 - Koushik Pal, Goutam Ghosh, Mahua Bhattacharya
:
GUI based smart breast cancer identification system for mammographic images through 2nd level secured combined Crypto-watermarking. 601-604 - Ibtehal Talal Nafea, M. N. Bhairy, Z. A. Zeidan:
Health tracking framework for Hajj pilgrims using electronic health records for Hajj. 605-607 - Hazel Boyd, Simon L. Jones, Nigel Harris
, Niki Panteli
, Jason Leake, Roy Jones:
Development and testing of the inTouch video link for people with dementia: Design approach and practical challenges. 608-612 - William Burns, Paul J. McCullagh
, Chris D. Nugent
, Huiru Zheng
:
Design and evaluation of a tool for reminiscence of life-logged data. 1-4 - Davide Mulfari, Antonio Celesti
, Maria Fazio
, Massimo Villari
, Antonio Puliafito:
Using embedded systems to spread assistive technology on multiple devices in smart environments. 5-11