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ORCIDJoonghyun Ryu
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2020 – today
- 2021
[j21]Josef Kallrath, Joonghyun Ryu, Chanyoung Song, Mokwon Lee, Deok-Soo Kim
:
Near optimal minimal convex hulls of disks. J. Glob. Optim. 80(3): 551-594 (2021)- 2020
- [j20]Joonghyun Ryu, Mokwon Lee, Donguk Kim, Josef Kallrath, Kokichi Sugihara, Deok-Soo Kim:
VOROPACK-D: Real-time disk packing algorithm using Voronoi diagram. Appl. Math. Comput. 375: 125076 (2020) - [j19]Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu:
MGOS: A library for molecular geometry and its operating system. Comput. Phys. Commun. 251: 107101 (2020) - [j18]Jehyun Cha, Joonghyun Ryu, Jin-Ho Choi, Deok-Soo Kim:
Medial-ABC: an algorithm for the correspondence between myocardium and coronary artery mesh models based on the medial axis of coronary artery. J. Comput. Des. Eng. 7(6): 736-760 (2020)
2010 – 2019
- 2019
- [j17]Nguyen Kieu Linh, Chanyoung Song, Joonghyun Ryu, Thanh An Phan, Nam-Dung Hoang, Deok-Soo Kim:
QuickhullDisk: A faster convex hull algorithm for disks. Appl. Math. Comput. 363 (2019) - [i3]Deok-Soo Kim, Joonghyun Ryu, Youngsong Cho, Mokwon Lee, Jehyun Cha, Chanyoung Song, Sangwha Kim, Roman A. Laskowski, Kokichi Sugihara, Jong Bhak, Seong Eon Ryu:
MGOS: A Library for Molecular Geometry and its Operating System. CoRR abs/1906.12141 (2019) - 2018
- [j16]Mokwon Lee, Qing Fang, Youngsong Cho, Joonghyun Ryu, Ligang Liu, Deok-Soo Kim:
Support-free hollowing for 3D printing via Voronoi diagram of ellipses. Comput. Aided Des. 101: 23-36 (2018) - 2017
- [i2]Mokwon Lee, Qing Fang, Joonghyun Ryu, Ligang Liu, Deok-Soo Kim:
Support-Free Hollowing for 3D Printing via Voronoi Diagram of Ellipses. CoRR abs/1708.06577 (2017) - [i1]Jehyun Cha, Joonghyun Ryu, Jin-Ho Choi, Deok-Soo Kim:
Fused Segmentation of Geometric Models for Myocardium and Coronary Artery via Medial Axis. CoRR abs/1708.09055 (2017) - 2016
- [j15]Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Roman A. Laskowski, Seong Eon Ryu, Deok-Soo Kim:
BetaSCPWeb: side-chain prediction for protein structures using Voronoi diagrams and geometry prioritization. Nucleic Acids Res. 44(Webserver-Issue): W416-W423 (2016) - 2014
- [j14]Jeongyeon Seo, Jae-Kwan Kim, Joonghyun Ryu, Carlile Lavor, Antonio Mucherino, Deok-Soo Kim:
BetaMDGP: Protein Structure Determination Algorithm Based on the Beta-complex. Trans. Comput. Sci. 22: 130-155 (2014) - [c14]Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song, Deok-Soo Kim:
Molecular Geometry and BULL! CW 2014: 261-268 - [c13]Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song:
BULL! - The Molecular Geometry Engine Based on Voronoi Diagram, Quasi-Triangulation, and Beta-Complex. ICMS 2014: 206-213 - [c12]Joonghyun Ryu, Mokwon Lee, Jehyun Cha, Chanyoung Song, Deok-Soo Kim:
BetaSCP2: A Program for the Optimal Prediction of Side-Chains in Proteins. ICMS 2014: 333-340 - 2013
- [j13]Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu, Jae-Kwan Kim, Donguk Kim:
Anomalies in quasi-triangulations and beta-complexes of spherical atoms in molecules. Comput. Aided Des. 45(1): 35-52 (2013) - [j12]Joonghyun Ryu, Deok-Soo Kim:
Protein structure optimization by side-chain positioning via beta-complex. J. Glob. Optim. 57(1): 217-250 (2013) - 2012
- [j11]Deok-Soo Kim, Youngsong Cho, Jae-Kwan Kim, Joonghyun Ryu:
QTF: Quasi-triangulation file format. Comput. Aided Des. 44(9): 835-845 (2012) - [j10]Deok-Soo Kim, Joonghyun Ryu, Hayong Shin, Youngsong Cho:
Beta-decomposition for the volume and area of the union of three-dimensional balls and their offsets. J. Comput. Chem. 33(13): 1252-1273 (2012) - 2011
- [c11]Youngsong Cho, Jae-Kwan Kim, Chung In Won, Joonghyun Ryu, Chong-Min Kim, Deok-Soo Kim:
BetaMol: Molecular Modeling, Analysis, and Visualization Software Based on the Beta-Complex Derived from the Voronoi Diagram. ISVD 2011: 48-57 - 2010
- [j9]Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu, Chong-Min Kim:
Topologies of surfaces on molecules and their computation in O(n) time. Comput. Aided Des. 42(9): 795-807 (2010) - [j8]Deok-Soo Kim, Youngsong Cho, Kokichi Sugihara, Joonghyun Ryu, Donguk Kim:
Three-dimensional beta-shapes and beta-complexes via quasi-triangulation. Comput. Aided Des. 42(10): 911-929 (2010) - [j7]Chong-Min Kim, Chung In Won, Jae-Kwan Kim, Joonghyun Ryu, Jong Bhak, Deok-Soo Kim:
Protein-Ligand Docking Based on Beta-Shape. Trans. Comput. Sci. 9: 123-138 (2010)
2000 – 2009
- 2009
- [j6]Joonghyun Ryu, Youngsong Cho, Deok-Soo Kim:
Triangulation of molecular surfaces. Comput. Aided Des. 41(6): 463-478 (2009) - [c10]Chong-Min Kim, Chung In Won, Joonghyun Ryu, Jae-Kwan Kim, Jong Bhak, Deok-Soo Kim:
Protein-Ligand Docking Based on ss-shape. ISVD 2009: 245-253 - 2008
- [p1]Deok-Soo Kim, Jeongyeon Seo, Donguk Kim, Youngsong Cho, Joonghyun Ryu:
The beta-Shape and beta-Complex for Analysis of Molecular Structures. Generalized Voronoi Diagram 2008: 47-66 - 2007
- [j5]Joonghyun Ryu, Rhohun Park, Deok-Soo Kim:
Molecular surfaces on proteins via beta shapes. Comput. Aided Des. 39(12): 1042-1057 (2007) - [j4]Cheol-Hyung Cho, Deok-Soo Kim, Youngsong Cho, Joonghyun Ryu:
Upper and lower bounds of op-code probabilities for Edgebreaker. Int. J. Comput. Sci. Eng. 3(1): 23-28 (2007) - [c9]Joonghyun Ryu, Rhohun Park, Jeongyeon Seo, Chong-Min Kim, Hyun-Chan Lee, Deok-Soo Kim:
Real-Time Triangulation of Molecular Surfaces. ICCSA (1) 2007: 55-67 - [c8]Deok-Soo Kim, Bohyung Lee, Chung In Won, Donguk Kim, Joonghyun Ryu, Youngsong Cho, Chong-Min Kim, Sunghoon Lee, Jonghwa Bhak:
Multi-Resolution Protein Model. ICCSA (2) 2007: 639-652 - [c7]Joonghyun Ryu, Rhohun Park, Youngsong Cho, Jeongyeon Seo, Deok-Soo Kim:
beta-shape Based Computation of Blending Surfaces on a Molecule. ISVD 2007: 189-198 - 2006
- [j3]Deok-Soo Kim, Jeongyeon Seo, Donguk Kim, Joonghyun Ryu, Cheol-Hyung Cho:
Three-dimensional beta shapes. Comput. Aided Des. 38(11): 1179-1191 (2006) - [j2]Joonghyun Ryu, Rhohun Park, Deok-Soo Kim:
Connolly Surface on an Atomic Structure via Voronoi Diagram of Atoms. J. Comput. Sci. Technol. 21(2): 255-260 (2006) - [c6]Jeongyeon Seo, Youngsong Cho, Cheol-Hyung Cho, Donguk Kim, Joonghyun Ryu, Deok-Soo Kim:
The B-shape and B-complex for three-dimensional spheres. ISVD 2006: 138-147 - 2005
- [c5]Deok-Soo Kim, Donguk Kim, Youngsong Cho, Joonghyun Ryu, Cheol-Hyung Cho, Joon Young Park, Hyun-Chan Lee:
Visualization and Analysis of Protein Structures Using Euclidean Voronoi Diagram of Atoms. ICCSA (3) 2005: 993-1002 - 2002
- [j1]Deok-Soo Kim, Joonghyun Ryu, Hyun-Chan Lee, Hayong Shin:
The conversion of a dynamic B-spline curve into piecewise polynomials in power form. Comput. Aided Des. 34(4): 337-345 (2002) - [c4]Joonghyun Ryu, Youngsong Cho, Deok-Soo Kim:
Transformation of a Dynamic B-Spline Curve into Piecewise Power Basis Representation. International Conference on Computational Science (2) 2002: 82-91 - 2001
- [c3]Deok-Soo Kim, Donguk Kim, Kokichi Sugihara, Joonghyun Ryu:
Robust and Fast Algorithm for a Circle Set Voronoi Diagram in a Plane. International Conference on Computational Science (1) 2001: 718-727 - [c2]Deok-Soo Kim, Donguk Kim, Kokichi Sugihara, Joonghyun Ryu:
Apollonius Tenth Problem as a Point Location Problem. International Conference on Computational Science (1) 2001: 728-737 - 2000
- [c1]Deok-Soo Kim, Joonghyun Ryu, Hyun-Chan Lee, Hayong Shin, Joonyoung Park, Taeboom Jang:
Fast Conversion of Dynamic B-Spline Curves into a Set of Power Form Polynomial Curves. GMP 2000: 337-343
Coauthor Index
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