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ORCIDAlexander V. Alekseyenko
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2020 – today
- 2024
[j13]Nephi A. Walton, Radhakrishnan Nagarajan, Chen Wang
, Murat Sincan, Robert R. Freimuth, David B. Everman, Derek C. Walton, Scott P. McGrath, Dominick J. Lemas, Panayiotis V. Benos, Alexander V. Alekseyenko, Qianqian Song, Ece D. Gamsiz Uzun, Casey Overby Taylor, Alper Uzun, Thomas N. Person, Nadav Rappoport, Zhongming Zhao, Marc S. Williams:
Enabling the clinical application of artificial intelligence in genomics: a perspective of the AMIA Genomics and Translational Bioinformatics Workgroup. J. Am. Medical Informatics Assoc. 31(2): 536-541 (2024)- 2023
- [j12]Bashir Hamidi, Patrick A. Flume, Kit N. Simpson, Alexander V. Alekseyenko:
Not all phenotypes are created equal: covariates of success in e-phenotype specification. J. Am. Medical Informatics Assoc. 30(2): 213-221 (2023) - [i3]Alexander V. Alekseyenko:
Online algorithm for assignment of specimens to pooled or individual testing using risk models provides a practical way to increase testing capacity. F1000Research 12: 85 (2023) - 2022
- [c16]Lauren Cuppy, Tami Crawford, Nikunja Swain, Alexander V. Alekseyenko:
Building Determinants of Health Ontology of Mappable Elements (DHOME). AMIA 2022 - 2021
- [j11]Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman:
A phylogenetic approach for weighting genetic sequences. BMC Bioinform. 22(1): 285 (2021) - [j10]Alexander V. Alekseyenko, Bashir Hamidi, Trevor D. Faith, Keith A. Crandall, Jennifer G. Powers, Christopher Metts, James E. Madory, Steven L. Carroll, Jihad S. Obeid, Leslie A. Lenert:
Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank. J. Am. Medical Informatics Assoc. 28(1): 138-143 (2021) - [j9]Stéphane M. Meystre, Paul M. Heider, Youngjun Kim, Matthew Davis, Jihad S. Obeid, James E. Madory, Alexander V. Alekseyenko:
Natural language processing enabling COVID-19 predictive analytics to support data-driven patient advising and pooled testing. J. Am. Medical Informatics Assoc. 29(1): 12-21 (2021) - [c15]Alexander V. Alekseyenko, Bashir Hamidi, Stéphane M. Meystre:
Colonizing Microbiome as a Determinant of COVID-19 Outcome: A Pilot Study. AMIA 2021 - [c14]Stéphane M. Meystre, Paul M. Heider, Jihad S. Obeid, Alexander V. Alekseyenko, James E. Madory:
Natural Language Processing and COVID-19 Predictive Analytics to Enable and Optimize SARS-CoV-2 Pooled Testing. AMIA 2021 - [i2]Thierry Pécot, Alexander V. Alekseyenko, Kristin Wallace:
A deep learning segmentation strategy that minimizes the amount of manually annotated images. F1000Research 10: 256 (2021) - 2020
- [c13]Alexander V. Alekseyenko:
Informatics Architecture for Phenotyped Microbiome Data Generation from Just-in-Time Clinical Microbiology Specimens from CTSA Network Producers. AMIA 2020 - [c12]Alexander V. Alekseyenko, Leslie A. Lenert:
Informatics Challenges of COVID-19 Crisis: A Comprehensive Response from An Academic Health System. AMIA 2020 - [c11]Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko:
Actionable Opportunities for Improving Opioid Prescribing through Use of Informatics. AMIA 2020
2010 – 2019
- 2019
- [j8]Yongqun He, Haihe Wang, Jie Zheng, Daniel P. Beiting, Anna Maria Masci, Hong Yu, Kaiyong Liu, Jianmin Wu, Jeffrey L. Curtis, Barry Smith, Alexander V. Alekseyenko, Jihad S. Obeid:
OHMI: the ontology of host-microbiome interactions. J. Biomed. Semant. 10(1): 25 (2019) - [c10]Ali Shojaee Bakhtiari, Kristin Wallace, Alexander V. Alekseyenko:
Multivariate Pathway Enrichment Analysis for Interpreting Expression Profiles. AMIA 2019 - [c9]Bashir Hamidi, Leslie A. Lenert, Alexander V. Alekseyenko:
Simulation Study of Just-in-Time Specimen Recruitment from University-Wide e-Phenotypes of Interest. AMIA 2019 - [c8]Neel A. Shimpi, Karmen S. Williams, Alexander V. Alekseyenko:
Actionable opportunities for improving knowledge at intersectionof dental and medical data. AMIA 2019 - 2018
- [j7]Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander V. Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary E. Sehl:
BioSimulator.jl: Stochastic simulation in Julia. Comput. Methods Programs Biomed. 167: 23-35 (2018) - [c7]Bashir Hamidi, Leslie A. Lenert, Jihad S. Obeid, Alexander V. Alekseyenko:
The Hidden Microbiome Pipeline: Providing Access to Clinical Microbiome Specimens, Sequences, and Informatics Resources. AMIA 2018 - [i1]Alfonso Landeros, Timothy Stutz, Kevin L. Keys, Alexander V. Alekseyenko, Janet S. Sinsheimer, Kenneth Lange, Mary E. Sehl:
BioSimulator.jl: Stochastic simulation in Julia. CoRR abs/1811.12499 (2018) - 2017
- [j6]Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko, Hongzhe Li:
A general framework for association analysis of microbial communities on a taxonomic tree. Bioinform. 33(9): 1278-1285 (2017) - [c6]Alexander V. Alekseyenko, Lita M. Proctor, Paul Carlson, Scott A. Jackson, Connie Chen:
The Impact of Human Microbiome on Precision Medicine. AMIA 2017 - [c5]Ali Shojaee Bakhtiari, Galina S. Bogatkevich, Alexander V. Alekseyenko:
Local Causal Networks Discover Predictive Cytokine Biomarkers of Scleroderma. AMIA 2017 - 2016
- [j5]Zheng-Zheng Tang, Guanhua Chen, Alexander V. Alekseyenko:
PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances. Bioinform. 32(17): 2618-2625 (2016) - [j4]Alexander V. Alekseyenko:
Multivariate Welch t-test on distances. Bioinform. 32(23): 3552-3558 (2016) - [c4]Alexander V. Alekseyenko:
Heteroscedastic Omics Data Analysis: Distance-Based Multivariate Approach. AMIA 2016 - [c3]Alexander V. Alekseyenko, Michael J. Becich, Todd Z. DeSantis, Jack A. Gilbert, Georg K. Gerber:
The Human Microbiome: Informatics Challenges and Opportunities. AMIA 2016 - [c2]Ali Shojaee Bakhtiari, Alexander V. Alekseyenko:
Comprehensive Evaluation of Univariate and Multivariate Distributions for Machine Learning With Microbiome Data. AMIA 2016 - 2011
- [c1]Susan P. Holmes, Alexander V. Alekseyenko, Alden Timme, Tyrrell Nelson, Pankaj Jay Pasricha, Alfred Spormann:
Visualization and Statistical Comparisons of Microbial Communities Using R Packages on Phylochip Data. Pacific Symposium on Biocomputing 2011: 142-153
2000 – 2009
- 2009
- [j3]Mary E. Sehl, Alexander V. Alekseyenko, Kenneth Lange:
Accurate Stochastic Simulation via the Step Anticipation τ-Leaping (SAL) Algorithm. J. Comput. Biol. 16(9): 1195-1208 (2009) - 2007
- [j2]Alexander V. Alekseyenko, Christopher J. Lee:
Nested Containment List (NCList): a new algorithm for accelerating interval query of genome alignment and interval databases. Bioinform. 23(11): 1386-1393 (2007) - [j1]Namshin Kim, Alexander V. Alekseyenko, Meenakshi Roy, Christopher J. Lee:
The ASAP II database: analysis and comparative genomics of alternative splicing in 15 animal species. Nucleic Acids Res. 35(Database-Issue): 93-98 (2007)
Coauthor Index
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