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Journal Articles
- 2023
[j15]Boyang Shi
, Ke An, Yueqin Wang, Yuhan Fei, Caixia Guo, Qiangfeng Cliff Zhang, Yun-Gui Yang, Xin Tian, Quancheng Kan:
RNA Structural Dynamics Modulate EGFR-TKI Resistance Through Controlling YRDC Translation in NSCLC Cells. Genom. Proteom. Bioinform. 21(4): 850-865 (2023)- [j14]Yiran Xu, Jianghui Zhu, Wenze Huang, Kui Xu, Rui Yang, Qiangfeng Cliff Zhang, Lei Sun:
PrismNet: predicting protein-RNA interaction using in vivo RNA structural information. Nucleic Acids Res. 51(W1): 468-477 (2023) - 2021
- [j13]Kui Xu, Nan Liu, Jingle Xu, Chunlong Guo, Lingyun Zhao, Hongwei Wang, Qiangfeng Cliff Zhang:
VRmol: an integrative web-based virtual reality system to explore macromolecular structure. Bioinform. 37(7): 1029-1031 (2021) - [j12]Pan Li, Xiaolin Zhou, Kui Xu, Qiangfeng Cliff Zhang:
RASP: an atlas of transcriptome-wide RNA secondary structure probing data. Nucleic Acids Res. 49(Database-Issue): D183-D191 (2021) - [j11]Jing Gong, Kui Xu, Ziyuan Ma, Zhi John Lu, Qiangfeng Cliff Zhang:
A deep learning method for recovering missing signals in transcriptome-wide RNA structure profiles from probing experiments. Nat. Mach. Intell. 3(11): 995-1006 (2021) - 2020
- [j10]Bo Yuan, Yao Lu, Qiangfeng Cliff Zhang, Lin Hou:
Prediction and differential analysis of RNA secondary structure. Quant. Biol. 8(2): 109-118 (2020) - [j9]Jianyu Zhou, Pan Li, Wanwen Zeng, Wenxiu Ma, Zhipeng Lu, Rui Jiang, Qiangfeng Cliff Zhang, Tao Jiang:
IRIS: A method for predicting in vivo RNA secondary structures using PARIS data. Quant. Biol. 8(4): 369-381 (2020) - 2018
- [j8]Jing Gong, Di Shao, Kui Xu, Zhipeng Lu, Zhi John Lu, Yu-Cheng T. Yang, Qiangfeng Cliff Zhang:
RISE: a database of RNA interactome from sequencing experiments. Nucleic Acids Res. 46(Database-Issue): D194-D201 (2018) - [j7]Jing Gong, Yanyan Ju, Di Shao, Qiangfeng Cliff Zhang:
Advances and challenges towards the study of RNA-RNA interactions in a transcriptome-wide scale. Quant. Biol. 6(3): 239-252 (2018) - 2017
- [j6]Meiling Piao, Lei Sun, Qiangfeng Cliff Zhang:
RNA Regulations and Functions Decoded by Transcriptome-wide RNA Structure Probing. Genom. Proteom. Bioinform. 15(5): 267-278 (2017) - 2014
- [j5]Lei Deng, Qiangfeng Cliff Zhang, Zhigang Chen, Yang Meng, Jihong Guan, Shuigeng Zhou:
PredHS: a web server for predicting protein-protein interaction hot spots by using structural neighborhood properties. Nucleic Acids Res. 42(Webserver-Issue): 290-295 (2014) - 2013
- [j4]Lei Deng, Jihong Guan, Xiaoming Wei, Yuan Yi, Qiangfeng Cliff Zhang, Shuigeng Zhou:
Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties. J. Comput. Biol. 20(11): 878-891 (2013) - [j3]Qiangfeng Cliff Zhang, Donald Petrey, José Ignacio Garzón, Lei Deng, Barry Honig:
PrePPI: a structure-informed database of protein-protein interactions. Nucleic Acids Res. 41(Database-Issue): 828-833 (2013) - 2011
- [j2]Qiangfeng Cliff Zhang, Lei Deng, Markus Fisher, Jihong Guan, Barry Honig, Donald Petrey:
PredUs: a web server for predicting protein interfaces using structural neighbors. Nucleic Acids Res. 39(Web-Server-Issue): 283-287 (2011) - [j1]Markus Fischer, Qiangfeng Cliff Zhang, Fabian Dey, Brian Y. Chen, Barry Honig, Donald Petrey:
MarkUs: a server to navigate sequence-structure-function space. Nucleic Acids Res. 39(Web-Server-Issue): 357-361 (2011)
Conference and Workshop Papers
- 2019
- [c2]Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang:
A2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. AAAI 2019: 1230-1237 - 2017
- [c1]Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder:
Harnessing Big Data for Precision Medicine: Infrastructures and Applications. PSB 2017: 635-639
Informal and Other Publications
- 2019
- [i1]Kui Xu, Zhe Wang, Jianping Shi, Hongsheng Li, Qiangfeng Cliff Zhang:
A^2-Net: Molecular Structure Estimation from Cryo-EM Density Volumes. CoRR abs/1901.00785 (2019)
Coauthor Index
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