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ORCIDMichael Snyder
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- affiliation: Stanford University School of Medicine, Stanford, CA, USA
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2020 – today
- 2021
[j21]Vandhana Krishnan, Sowmithri Utiramerur, Zena Ng, Somalee Datta, Michael Snyder, Euan A. Ashley:
Benchmarking workflows to assess performance and suitability of germline variant calling pipelines in clinical diagnostic assays. BMC Bioinform. 22(1): 85 (2021)- 2020
- [j20]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks. J. Am. Medical Informatics Assoc. 27(5): 757-769 (2020)
2010 – 2019
- 2019
- [c14]Kun-Hsing Yu, Feiran Wang, Gerald J. Berry, Christopher Ré, Russ B. Altman, Michael Snyder, Isaac S. Kohane:
Classifying Non-Small Cell Lung Cancer Histopathology Types and Transcriptomic Subtypes using Convolutional Neural Networks. AMIA 2019 - 2018
- [j19]Kun-Hsing Yu
, Michael R. Fitzpatrick, Luke Pappas, Warren Chan, Jessica Kung, Michael Snyder:
Omics AnalySIs System for PRecision Oncology (OASISPRO): a web-based omics analysis tool for clinical phenotype prediction. Bioinform. 34(2): 319-320 (2018) - [c13]Kun-Hsing Yu, Gerald J. Berry, Daniel L. Rubin, Christopher Ré, Russ B. Altman, Michael Snyder:
Unraveling the Molecular Basis of Lung Adenocarcinoma Dedifferentiation and Prognosis by Integrating Omics and Histopathology. AMIA 2018 - 2017
- [j18]Cuiping Pan, Gregory McInnes, Nicole Deflaux, Michael Snyder, Jonathan Bingham, Somalee Datta, Philip S. Tsao:
Cloud-based interactive analytics for terabytes of genomic variants data. Bioinform. 33(23): 3709-3715 (2017) - [c12]Kun-Hsing Yu, Ce Zhang, Gerald J. Berry, Russ B. Altman, Christopher Ré, Daniel L. Rubin, Michael Snyder:
Predicting Non-Small Cell Lung Cancer Diagnosis and Prognosis by Fully Automated Microscopic Pathology Image Features. AMIA 2017 - [c11]Jessilyn Dunn, Xiao Li, Denis Salins, Michael Snyder:
Consumer Wearable Devices for Health Surveillance and Disease Monitoring. CRI 2017 - [c10]Kun-Hsing Yu, Steven N. Hart, Rachel L. Goldfeder, Qiangfeng Cliff Zhang, Stephen C. J. Parker, Michael Snyder:
Harnessing Big Data for Precision Medicine: Infrastructures and Applications. PSB 2017: 635-639 - 2016
- [c9]Rafael A. Calvo, Nick Haber, Catalin Voss, Michael Nova, Dennis Salins, Michael Snyder, Dennis P. Wall:
Invited Talks at the AAAI Symposium on Well-Being Computing. AAAI Spring Symposia 2016 - 2014
- [j17]Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel S. Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder:
Comparative analysis of regulatory information and circuits across distant species Open. Nat. 512(7515): 453-456 (2014) - [c8]Roxana Daneshjou, Zachary Zappala, Kimberly R. Kukurba, Sean M. Boyle, Kelly E. Ormond, Teri E. Klein, Michael Snyder, Carlos D. Bustamante, Russ B. Altman, Stephen B. Montgomery:
PATH-SCAN: A Reporting Tool for Identifying Clinically Actionable Variants. Pacific Symposium on Biocomputing 2014: 229-240 - [i1]Andrea L. Brennen, David Danico, Raul Harnasch, Maureen Hunter, Richard Larkin, Jeremy Mineweaser, Kevin Nam, B. David O'Gwynn, Harry Phan, Alexia Schulz, Michael Snyder, Diane Staheli, Tamara Yu:
A novel display for situational awareness at a network operations center. CoRR abs/1412.3768 (2014) - 2013
- [j16]Eugene Kolker, Vural Özdemir, Lennart Martens, William Hancock, Gordon A. Anderson, Nathaniel Anderson, Sukru Aynacioglu, Ancha V. Baranova, Shawn R. Campagna, Rui Chen, John Choiniere, Stephen P. Dearth, Wu-Chun Feng, Lynnette Ferguson, Geoffrey C. Fox, Dmitrij Frishman, Robert Grossman, Allison P. Heath, Roger Higdon, Mara H. Hutz, Imre Janko, Lihua Jiang, Sanjay Joshi, Alexander Kel, Joseph W. Kemnitz, Isaac S. Kohane, Natali Kolker, Doron Lancet, Elaine Lee, Weizhong Li, Andrey Lisitsa, Adrian Llerena, Courtney MacNealy-Koch, Jean-Claude Marshall, Paola Masuzzo, Amanda May, George Mias, Matthew E. Monroe, Elizabeth Montague, Sean Mooney, Alexey I. Nesvizhskii, Santosh Noronha, Gilbert S. Omenn, Harsha Rajasimha, Preveen Ramamoorthy, Jerry Sheehan, Larry Smarr, Charles V. Smith, Todd Smith, Michael Snyder, Srikanth Rapole, Sanjeeva Srivastava, Larissa Stanberry, Elizabeth Stewart, Stefano Toppo, Peter Uetz, Kenneth Verheggen, Brynn H. Voy, Louise Warnich, Steven W. Wilhelm, Gregory Yandl:
Toward More Transparent and Reproducible Omics Studies Through a Common Metadata Checklist and Data Publications. Big Data 1(4): 196-201 (2013) - [j15]Michael Snyder, George Mias, Larissa Stanberry, Eugene Kolker:
Metadata Checklist for the Integrated Personal Omics Study: Proteomics and Metabolomics Experiments. Big Data 1(4): 202-206 (2013) - [j14]George Mias, Michael Snyder:
Personal genomes, quantitative dynamic omics and personalized medicine. Quant. Biol. 1(1): 71-90 (2013) - 2012
- [j13]Lukas Habegger, Suganthi Balasubramanian, David Z. Chen, Ekta Khurana, Andrea Sboner, Arif O. Harmanci, Joel S. Rozowsky, Declan Clarke, Michael Snyder, Mark Gerstein:
VAT: a computational framework to functionally annotate variants in personal genomes within a cloud-computing environment. Bioinform. 28(17): 2267-2269 (2012) - [c7]Konrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim:
Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation Engine. Pacific Symposium on Biocomputing 2012: 339-350 - 2011
- [j12]Lukas Habegger, Andrea Sboner, Tara A. Gianoulis, Joel S. Rozowsky, Ashish Agarwal, Michael Snyder, Mark Gerstein:
RSEQtools: a modular framework to analyze RNA-Seq data using compact, anonymized data summaries. Bioinform. 27(2): 281-283 (2011) - [j11]Chong Shou, Nitin Bhardwaj, Hugo Y. K. Lam, Koon-Kiu Yan, Philip M. Kim, Michael Snyder, Mark B. Gerstein:
Measuring the Evolutionary Rewiring of Biological Networks. PLoS Comput. Biol. 7(1) (2011) - [j10]Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein:
Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data. PLoS Comput. Biol. 7(11) (2011) - 2010
- [j9]Hugo Y. K. Lam, Philip M. Kim, Janine Mok, Raffi Tonikian, Sachdev S. Sidhu, Benjamin E. Turk, Michael Snyder, Mark B. Gerstein:
MOTIPS: Automated Motif Analysis for Predicting Targets of Modular Protein Domains. BMC Bioinform. 11: 243 (2010)
2000 – 2009
- 2009
- [j8]Jiang Du, Robert D. Bjornson, Zhengdong D. Zhang, Yong Kong, Michael Snyder, Mark B. Gerstein:
Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants. PLoS Comput. Biol. 5(7) (2009) - 2008
- [j7]Zhengdong D. Zhang, Joel S. Rozowsky, Michael Snyder, Joseph T. Chang, Mark Gerstein:
Modeling ChIP Sequencing In Silico with Applications. PLoS Comput. Biol. 4(8) (2008) - 2006
- [j6]Jiang Du, Joel S. Rozowsky, Jan O. Korbel, Zhengdong D. Zhang, Thomas E. Royce, Martin H. Schultz, Michael Snyder, Mark Gerstein:
A supervised hidden markov model framework for efficiently segmenting tiling array data in transcriptional and chIP-chip experiments: systematically incorporating validated biological knowledge. Bioinform. 22(24): 3016-3024 (2006) - 2005
- [c6]Joel S. Rozowsky, Paul Bertone, Thomas E. Royce, Sherman Weissman, Michael Snyder, Mark Gerstein:
Analysis of Genomic Tiling Microarrays for Transcript Mapping and the Identification of Transcription Factor Binding Sites. BSB 2005: 28-29 - 2004
- [j5]Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder:
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. J. Comput. Biol. 11(4): 766-785 (2004) - 2003
- [j4]Nicholas M. Luscombe, Thomas E. Royce, Paul Bertone, Nathaniel Echols, Christine E. Horak, Joseph T. Chang, Michael Snyder, Mark Gerstein:
ExpressYourself: a modular platform for processing and visualizing microarray data. Nucleic Acids Res. 31(13): 3477-3482 (2003) - 2002
- [j3]Kei-Hoi Cheung, Janet Hager, Kenneth Nelson, Kevin P. White, Yuli Li, Michael Snyder, Kenneth R. Williams, Perry L. Miller:
A dynamic approach to mapping coordinates between microplates and microarrays. J. Biomed. Informatics 35(5-6): 306-312 (2002) - [j2]Anuj Kumar, Kei-Hoi Cheung, Nick P. Tosches, Peter Masiar, Yang Liu, Perry L. Miller, Michael Snyder:
The TRIPLES database: a community resource for yeast molecular biology. Nucleic Acids Res. 30(1): 73-75 (2002) - [c5]Kei-Hoi Cheung, Kevin P. White, Janet Hager, Mark Gerstein, Valerie Reinke, Kenneth Nelson, Peter Masiar, Ranjana Srivastava, Yuli Li, Ju Li, Hongyu Zhao, Jinming Li, David B. Allison, Michael Snyder, Perry L. Miller, Kenneth R. Williams:
YMD: a microarray database for large-scale gene expression analysis. AMIA 2002 - [c4]Piotr Berman, Paul Bertone, Bhaskar DasGupta, Mark Gerstein, Ming-Yang Kao, Michael Snyder:
Fast Optimal Genome Tiling with Applications to Microarray Design and Homology Search. WABI 2002: 419-433 - 2001
- [c3]Kei-Hoi Cheung, Aniruddha M. Deshpande, Nick P. Tosches, S. Nath, A. Agrawal, Perry L. Miller, Anuj Kumar, Michael Snyder:
A metadata framework for interoperating heterogeneous genome data using XML. AMIA 2001 - [c2]Kei-Hoi Cheung, Yang Liu, Anuj Kumar, Michael Snyder, Mark Gerstein, Perry L. Miller:
An XML Application For Genomic Data Interoperation. BIBE 2001: 97-103 - 2000
- [j1]Anuj Kumar, Kei-Hoi Cheung, Petra Ross-MacDonald, Paulo S. R. Coelho, Perry L. Miller, Michael Snyder:
TRIPLES: a database of gene function in Saccharomyces cerevisiae. Nucleic Acids Res. 28(1): 81-84 (2000) - [c1]Kei-Hoi Cheung, Perry L. Miller, A. H. Sherman, Stephen B. Weston, Eric Stratmann, Martin H. Schultz, Michael Snyder, Anuj Kumar:
Graphically-enabled integration of bioinformatics tools allowing parallel execution. AMIA 2000
Coauthor Index
aka: Mark B. Gerstein
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