![](https://dblp.org/img/logo.ua.320x120.png)
![](https://dblp.org/img/dropdown.dark.16x16.png)
![](https://dblp.org/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.org/img/search.dark.16x16.png)
![search dblp](https://dblp.org/img/search.dark.16x16.png)
default search action
Jing He 0002
Person information
- affiliation: Old Dominion University, Department of Computer Science, Norfolk, VA, USA
- affiliation (former): New Mexico State University, Computer Science Department, Las Cruces, NM, USA
Other persons with the same name
- Jing He — disambiguation page
- Selena He
(aka: Jing He 0001, Jing (Selena) He, Jing Selena He) — Kennesaw State University, Department of Computer Science, Marietta, GA, USA (and 1 more)
- Jing He 0003
— Hunan University of Technology, College of Electrical and Information Engineering, Zhuzhou, China (and 1 more)
- Jing He 0004
— Nanjing University of Posts and Telecommunications, Department of Computer Science, Nanjing, China (and 5 more)
- Jing He 0005
— Hunan University, College of Computer Science and Electronic Engineering, Changsha, China
- Jing He 0006 — Hunan University, College of Computer Science and Electronic Engineering, Changsha, China
- Jing He 0007
— Xidian University, State Key Laboratory of Integrated Services Networks, Xi'an, China
- Jing He 0008
— China University of Mining and Technology, College of Geoscience and Surveying Engineering, Beijing, China
- Jing He 0009 — Tsinghua University, Institute for Interdisciplinary Information Sciences, Beijing, China (and 1 more)
- Jing He 0010 — AdeptMind, Toronto, Canada (and 2 more)
- Jing He 0011
— Chongqing University, College of Computer Science, Key Laboratory of Dependable Service Computing in Cyber-Physical-Society, Chongqing, China (and 1 more)
- Jing He 0012 — Yunnan University, School of Software, Kunming, China
- Jing He 0013
— Northwestern Polytechnical University, School of Automation, Key Laboratory of Information Fusion Technology, Xi'an, China
- Jing He 0014
— Hangzhou Dianzi University, College of Communication Engineering, Hangzhou, China
- Jing He 0016
— Xi'an Jiaotong University, School of Software Engineering, Xi'an, China
- Jing He 0017
— Air Force Engineering University, Information and Navigation College, Xi'an, China
- Jing He 0018
— Changsha Social Work College, Software College, Changsha, China
- Jing He 0019
— University of Delaware, Newark, DE, USA
- Jing He 0020 — Chinese Academy of Sciences, Institute of Microelectronics, Beijing, China (and 1 more)
Refine list
![note](https://dblp.org/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
- [c33]Thu Nguyen, Willy Wriggers, Jing He:
A Data Set of Paired Structural Segments Between Protein Data Bank and AlphaFold DB for Medium-Resolution Cryo-EM Density Maps: A Gap in Overall Structural Quality. ISBRA (3) 2024: 52-63 - 2023
- [c32]Thu Nguyen
, Yongcheng Mu
, Jiangwen Sun
, Jing He
:
An Approach to Developing Benchmark Datasets for Protein Secondary Structure Segmentation from Cryo-EM Density Maps. BCB 2023: 102:1-102:8 - [c31]Maytha Alshammari
, Jing He
, Willy Wriggers
:
AlphaFold2 Model Refinement Using Structure Decoys. BCB 2023: 108:1-108:7 - 2022
- [c30]Maytha Alshammari, Jing He, Willy Wriggers:
Refinement of AlphaFold2 Models against Experimental Cryo-EM Density Maps at 4-6Å Resolution. BIBM 2022: 3423-3430 - [c29]Yongcheng Mu, Jiangwen Sun, Jing He:
The Combined Focal Cross Entropy and Dice Loss Function for Segmentation of Protein Secondary Structures from Cryo-EM 3D Density maps. BIBM 2022: 3454-3461 - [c28]Salim Sazzed, Peter Scheible, Jing He, Willy Wriggers:
Tracing Randomly Oriented Filaments in a Simulated Actin Network Tomogram. BIBM 2022: 3486-3491 - 2021
- [j20]Yongcheng Mu, Salim Sazzed
, Maytha Alshammari, Jiangwen Sun, Jing He:
A Tool for Segmentation of Secondary Structures in 3D Cryo-EM Density Map Components Using Deep Convolutional Neural Networks. Frontiers Bioinform. 1 (2021) - [c27]Salim Sazzed
, Peter Scheible, Jing He, Willy Wriggers:
Tracing Filaments in Simulated 3D Cryo-Electron Tomography Maps Using a Fast Dynamic Programming Algorithm. BIBM 2021: 2553-2559 - [c26]Peter Scheible, Salim Sazzed
, Jing He, Willy Wriggers:
TomoSim: Simulation of Filamentous Cryo-Electron Tomograms. BIBM 2021: 2560-2565 - 2020
- [j19]Julio A. Kovacs, Junha Song
, Manfred Auer, Jing He, Wade Hunter, Willy Wriggers
:
Correction of Missing-Wedge Artifacts in Filamentous Tomograms by Template-Based Constrained Deconvolution. J. Chem. Inf. Model. 60(5): 2626-2633 (2020) - [j18]Salim Sazzed
, Peter Scheible, Maytha Alshammari, Willy Wriggers, Jing He
:
Cylindrical Similarity Measurement for Helices in Medium-Resolution Cryo-Electron Microscopy Density Maps. J. Chem. Inf. Model. 60(5): 2644-2650 (2020)
2010 – 2019
- 2019
- [c25]Lin Chen, Jing He:
A Histogram-based Outlier Profile for Atomic Structures Derived from Cryo-Electron Microscopy. BCB 2019: 586-591 - 2018
- [j17]Jing He, Kamal Al-Nasr, Weitao Sun, Yonggang Lu:
Special IssuePreface: The 9th Computational Structural Bioinformatics Workshop. J. Comput. Biol. 25(1): 1-2 (2018) - [j16]Tunazzina Islam, Michael Poteat, Jing He:
Quantification of Twist from the Central Lines of β-Strands. J. Comput. Biol. 25(1): 114-120 (2018) - [c24]Devin Haslam, Tao Zeng, Rongjian Li, Jing He:
Exploratory Studies Detecting Secondary Structures in Medium Resolution 3D Cryo-EM Images Using Deep Convolutional Neural Networks. BCB 2018: 628-632 - [c23]Lin Chen, Jing He:
Using Combined Features to Analyze Atomic Structures derived from Cryo-EM Density Maps. BCB 2018: 651-655 - [c22]Devin Haslam, Salim Sazzed
, Willy Wriggers, Julio Kovcas, Junha Song, Manfred Auer, Jing He:
A Pattern Recognition Tool for Medium-Resolution Cryo-EM Density Maps and Low-Resolution Cryo-ET Density Maps. ISBRA 2018: 233-238 - 2017
- [j15]Jing He, Nurit Haspel, Brian Chen:
Preface: Selected Articles from 2015 Computational Structural Bioinformatics Workshop. J. Comput. Biol. 24(1): 1 (2017) - [j14]Stephanie Zeil, Julio A. Kovacs, Willy Wriggers
, Jing He:
Comparing an Atomic Model or Structure to a Corresponding Cryo-electron Microscopy Image at the Central Axis of a Helix. J. Comput. Biol. 24(1): 52-67 (2017) - [j13]Abhishek Biswas
, Desh Ranjan, Mohammad Zubair, Stephanie Zeil, Kamal Al-Nasr, Jing He:
An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images. IEEE ACM Trans. Comput. Biol. Bioinform. 14(3): 578-586 (2017) - [c21]Tunazzina Islam, Michael Poteat, Jing He:
Analysis of ß-strand Twist from the 3-dimensional Image of a Protein. BCB 2017: 650-654 - 2016
- [j12]Kamal Al-Nasr, Jing He:
Constrained cyclic coordinate descent for cryo-EM images at medium resolutions: beyond the protein loop closure problem. Robotica 34(8): 1777-1790 (2016) - [c20]Rongjian Li, Dong Si, Tao Zeng, Shuiwang Ji
, Jing He:
Deep convolutional neural networks for detecting secondary structures in protein density maps from cryo-electron microscopy. BIBM 2016: 41-46 - [c19]Devin Haslam, Mohammad Zubair, Desh Ranjan, Abhishek Biswas
, Jing He:
Challenges in matching secondary structures in cryo-EM: An exploration. BIBM 2016: 1714-1719 - [c18]Jinyang Yan, Yonggang Lu
, Jing He:
Selecting near-native structures from decoys using maximal cliques. BIBM 2016: 1745-1748 - 2015
- [j11]Jing He
, Amarda Shehu, Nurit Haspel, Brian Chen:
The 7th Computational Structural Bioinformatics Workshop. J. Comput. Biol. 22(9): 785-786 (2015) - [j10]Abhishek Biswas
, Desh Ranjan, Mohammad Zubair, Jing He
:
A Dynamic Programming Algorithm for Finding the Optimal Placement of a Secondary Structure Topology in Cryo-EM Data. J. Comput. Biol. 22(9): 837-843 (2015) - [c17]Jing He, Stephanie Zeil, Hussam Hallak, Kele McKaig, Julio A. Kovacs, Willy Wriggers
:
Comparison of an atomic model and its cryo-EM image at the central axis of a helix. BIBM 2015: 1253-1259 - [c16]Jing He
, Dong Si, Maryam Arab:
Detection of Secondary Structures from 3D Protein Images of Medium Resolutions and its Challenges. ICIG (2) 2015: 147-155 - [c15]Kamal Al-Nasr, Jing He
:
Deriving Protein Backbone Using Traces Extracted from Density Maps at Medium Resolutions. ISBRA 2015: 1-11 - [c14]Abhishek Biswas
, Desh Ranjan, Mohammad Zubair, Jing He:
A Novel Computational Method for Deriving Protein Secondary Structure Topologies Using Cryo-EM Density Maps and Multiple Secondary Structure Predictions. ISBRA 2015: 60-71 - 2014
- [j9]Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Lin Chen, Jing He
:
Solving the Secondary Structure MatchingProblem in Cryo-EM De Novo ModelingUsing a Constrained $K$-Shortest Path Graph Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 11(2): 419-430 (2014) - [c13]Dong Si, Jing He
:
Orientations of beta-strand traces and near maximum twist. BCB 2014: 690-694 - [c12]Kamal Al-Nasr, Jing He
:
Construction of protein backbone pieces using segment-based FBCCD and Cryo-EM skeleton. BCB 2014: 711-716 - [c11]Dong Si, Jing He
:
Combining image processing and modeling to generate traces of beta-strands from cryo-EM density images of beta-barrels. EMBC 2014: 3941-3944 - 2013
- [j8]Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, Jing He
:
Intensity-Based Skeletonization of CryoEM Gray-Scale Images Using a True Segmentation-Free Algorithm. IEEE ACM Trans. Comput. Biol. Bioinform. 10(5): 1289-1298 (2013) - [c10]Kamal Al-Nasr, Lin Chen, Desh Ranjan, Mohammad Zubair, Dong Si, Jing He
:
A Constrained K-shortest Path Algorithm to Rank the Topologies of the Protein Secondary Structure Elements Detected in CryoEM Volume Maps. BCB 2013: 749 - [c9]Dong Si, Jing He
:
Beta-sheet Detection and Representation from Medium Resolution Cryo-EM Density Maps. BCB 2013: 764 - 2012
- [j7]Abhishek Biswas
, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
:
Improved Efficiency in Cryo-EM Secondary Structure Topology Determination from Inaccurate Data. J. Bioinform. Comput. Biol. 10(3) (2012) - [c8]Kamal Al-Nasr, Lin Chen, Dong Si, Desh Ranjan, Mohammad Zubair, Jing He
:
Building the initial chain of the proteins through de novo modeling of the cryo-electron microscopy volume data at the medium resolutions. BCB 2012: 490-497 - [c7]Andrew McKnight, Kamal Al-Nasr, Dong Si, Andrey N. Chernikov, Nikos Chrisochoides, Jing He
:
CryoEM skeleton length estimation using a decimated curve. BIBM Workshops 2012: 109-113 - 2011
- [j6]Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
:
Ranking Valid Topologies of the Secondary Structure Elements Using a Constraint Graph. J. Bioinform. Comput. Biol. 9(3): 415-430 (2011) - [c6]Abhishek Biswas
, Dong Si, Kamal Al-Nasr, Desh Ranjan, Mohammad Zubair, Jing He
:
A Constraint Dynamic Graph Approach to Identify the Secondary Structure Topology from cryoEM Density Data in Presence of Errors. BIBM 2011: 160-163 - [c5]Lin Chen, Jing He
:
A distance and orientation dependent potential energy function with cluster energy. BIBM Workshops 2011: 405-409 - 2010
- [j5]Kamal Al-Nasr, Weitao Sun, Jing He
:
Structure prediction for the helical skeletons detected from the low resolution protein density map. BMC Bioinform. 11(S-1): 44 (2010)
2000 – 2009
- 2009
- [j4]Weitao Sun, Jing He
:
Reduction of the secondary structure topological space through direct estimation of the contact energy formed by the secondary structures. BMC Bioinform. 10(S-1) (2009) - [j3]Kamal Al-Nasr, Jing He
:
An effective convergence independent loop closure method using Forward-Backward Cyclic Coordinate Descent. Int. J. Data Min. Bioinform. 3(3): 346-361 (2009) - 2008
- [j2]Yonggang Lu, Jing He
, Charlie E. M. Strauss:
Deriving Topology and Sequence Alignment for the Helix Skeleton in Low-Resolution protein Density Maps. J. Bioinform. Comput. Biol. 6(1): 183-201 (2008) - 2007
- [j1]Alessandro Dal Palù
, Enrico Pontelli
, Jing He
, Yonggang Lu
:
A Constraint Logic Programming approach to associate 1D and 3D structural components for large protein complexes. Int. J. Data Min. Bioinform. 1(4): 352-371 (2007) - [c4]Yonggang Lu, Jing He, Charlie E. M. Strauss:
Deriving Protein Structure Topology from the Helix Skeletion in Low Resolution Density Map using Rosetta. APBC 2007: 143-151 - 2006
- [c3]Alessandro Dal Palù, Enrico Pontelli, Jing He, Yonggang Lu:
A constraint logic programming approach to 3D structure determination of large protein complexes. SAC 2006: 131-136 - 2005
- [p1]Jing He, Yonggang Lu:
Using the Length Constraints of Helix to Evaluate protein secondary Structure Prediction for Helix. Advances in Bioinformatics and Its Applications 2005 - 2004
- [c2]Jing He, Desh Ranjan, Wen Jiang, Wah Chiu, Michael F. Schmid:
Detecting Local Symmetry Axis in 3-dimensional Virus Structures. APBC 2004: 265-270 - [c1]Jing He, Yonggang Lu, Enrico Pontelli:
A Parallel Algorithm for Helix Mapping Between 3D and 1D Protein Structure Using the Length Constraints. ISPA 2004: 746-756
Coauthor Index
![](https://dblp.org/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-09-02 00:11 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint