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ORCIDDaron M. Standley
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Journal Articles
- 2022
[j17]Zichang Xu, Hendra S. Ismanto, Hao Zhou, Dianita S. Saputri, Fuminori Sugihara, Daron M. Standley:
Advances in antibody discovery from human BCR repertoires. Frontiers Bioinform. 2 (2022)- 2019
- [j16]John Rozewicki, Songling Li
, Karlou Mar Amada, Daron M. Standley, Kazutaka Katoh:
MAFFT-DASH: integrated protein sequence and structural alignment. Nucleic Acids Res. 47(Webserver-Issue): W5-W10 (2019) - 2016
- [j15]Kazutaka Katoh, Daron M. Standley:
A simple method to control over-alignment in the MAFFT multiple sequence alignment program. Bioinform. 32(13): 1933-1942 (2016) - 2014
- [j14]Kazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley:
Kotai Antibody Builder: automated high-resolution structural modeling of antibodies. Bioinform. 30(22): 3279-3280 (2014) - 2013
- [j13]Alexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi, Karlou Mar Amada, Shizuo Akira, Daron M. Standley:
A Parzen window-based approach for the detection of locally enriched transcription factor binding sites. BMC Bioinform. 14: 26 (2013) - [j12]Shide Liang, Dandan Zheng, Daron M. Standley, Huarong Guo, Chi Zhang:
A novel function prediction approach using protein overlap networks. BMC Syst. Biol. 7: 61 (2013) - 2012
- [j11]Akira R. Kinjo, Hirofumi Suzuki, Reiko Yamashita, Yasuyo Ikegawa, Takahiro Kudou, Reiko Igarashi, Yumiko Kengaku, Hasumi Cho, Daron M. Standley, Atsushi Nakagawa, Haruki Nakamura:
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format. Nucleic Acids Res. 40(Database-Issue): 453-460 (2012) - 2011
- [j10]Shide Liang, Dandan Zheng, Chi Zhang, Daron M. Standley:
Fast and accurate prediction of protein side-chain conformations. Bioinform. 27(20): 2913-2914 (2011) - [j9]Michael Fernández, Yutaro Kumagai, Daron M. Standley, Akinori Sarai, Kenji Mizuguchi, Shandar Ahmad:
Prediction of dinucleotide-specific RNA-binding sites in proteins. BMC Bioinform. 12(S-13): S5 (2011) - [j8]Shide Liang, Yaoqi Zhou, Nick V. Grishin, Daron M. Standley:
Protein side chain modeling with orientation-dependent atomic force fields derived by series expansions. J. Comput. Chem. 32(8): 1680-1686 (2011) - 2010
- [j7]Daron M. Standley, Reiko Yamashita, Akira R. Kinjo, Hiroyuki Toh, Haruki Nakamura:
SeSAW: balancing sequence and structural information in protein functional mapping. Bioinform. 26(9): 1258-1259 (2010) - [j6]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [j5]Shide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, Chi Zhang:
EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server results. BMC Bioinform. 11: 381 (2010) - [j4]Shunsuke Teraguchi, Ashwini Patil, Daron M. Standley:
Intrinsically disordered domains deviate significantly from random sequences in mammalian proteins. BMC Bioinform. 11(S-7): S7 (2010) - 2008
- [j3]Daron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura:
Protein structure databases with new web services for structural biology and biomedical research. Briefings Bioinform. 9(4): 276-285 (2008) - 2007
- [j2]Daron M. Standley, Hiroyuki Toh, Haruki Nakamura:
ASH structure alignment package: Sensitivity and selectivity in domain classification. BMC Bioinform. 8 (2007) - 2005
- [j1]Daron M. Standley, Hiroyuki Toh, Haruki Nakamura:
GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structures. BMC Bioinform. 6: 221 (2005)
Conference and Workshop Papers
- 2012
- [c1]Ashwini Patil, Shunsuke Teraguchi, Huy Dinh, Kenta Nakai, Daron M. Standley:
Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD Navigator. Pacific Symposium on Biocomputing 2012: 164-175
Coauthor Index
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