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Pavel S. Novichkov
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2010 – 2019
- 2015
- [c2]Xin-Yi Chua
, Lawrence Buckingham, James M. Hogan, Pavel S. Novichkov:
Large Scale Comparative Visualisation of Regulatory Networks with TRNDiff. ICCS 2015: 713-724 - 2014
- [j12]Serdar Turkarslan, Elisabeth J. Wurtmann, Wei-Ju Wu, Ning Jiang, J. Christopher Bare
, Karen Foley, David J. Reiss, Pavel S. Novichkov, Nitin S. Baliga:
Network portal: a database for storage, analysis and visualization of biological networks. Nucleic Acids Res. 42(Database-Issue): 184-190 (2014) - 2012
- [j11]Pavel S. Novichkov, Thomas S. Brettin, Elena S. Novichkova, Paramvir S. Dehal, Adam P. Arkin, Inna Dubchak, Dmitry A. Rodionov
:
RegPrecise web services interface: programmatic access to the transcriptional regulatory interactions in bacteria reconstructed by comparative genomics. Nucleic Acids Res. 40(Web-Server-Issue): 604-608 (2012) - [c1]Elena D. Stavrovskaya, Andrey A. Mironov, Dmitry A. Rodionov, Inna Dubchak, Pavel S. Novichkov:
Automated Regulon Content Prediction and Estimation of PWM Quality. BIOINFORMATICS 2012: 322-325 - 2011
- [j10]Igor Lukashin, Pavel S. Novichkov, Dario Boffelli, Alex R. Paciorkowski, Simon Minovitsky, Song Yang, Inna Dubchak:
VISTA Region Viewer (RViewer) - a computational system for prioritizing genomic intervals for biomedical studies. Bioinform. 27(18): 2595-2597 (2011) - 2010
- [j9]Pavel S. Novichkov, Olga N. Laikova, Elena S. Novichkova, Mikhail S. Gelfand
, Adam P. Arkin, Inna Dubchak, Dmitry A. Rodionov
:
RegPrecise: a database of curated genomic inferences of transcriptional regulatory interactions in prokaryotes. Nucleic Acids Res. 38(Database-Issue): 111-118 (2010) - [j8]Paramvir S. Dehal, Marcin P. Joachimiak
, Morgan N. Price, John T. Bates
, Jason K. Baumohl, Dylan Chivian
, Greg D. Friedland, Katherine H. Huang, Keith Keller, Pavel S. Novichkov, Inna Dubchak, Eric J. Alm, Adam P. Arkin:
MicrobesOnline: an integrated portal for comparative and functional genomics. Nucleic Acids Res. 38(Database-Issue): 396-400 (2010) - [j7]Pavel S. Novichkov, Dmitry A. Rodionov
, Elena D. Stavrovskaya, Elena S. Novichkova, Alexei E. Kazakov, Mikhail S. Gelfand
, Adam P. Arkin, Andrey A. Mironov, Inna Dubchak:
RegPredict: an integrated system for regulon inference in prokaryotes by comparative genomics approach. Nucleic Acids Res. 38(Web-Server-Issue): 299-307 (2010)
2000 – 2009
- 2009
- [j6]Pavel S. Novichkov, Igor Ratnere, Yuri I. Wolf
, Eugene V. Koonin, Inna Dubchak:
ATGC: a database of orthologous genes from closely related prokaryotic genomes and a research platform for microevolution of prokaryotes. Nucleic Acids Res. 37(Database-Issue): 448-454 (2009) - 2007
- [j5]Alexei E. Kazakov, Michael J. Cipriano
, Pavel S. Novichkov, Simon Minovitsky, Dmitry V. Vinogradov
, Adam P. Arkin
, Andrey A. Mironov, Mikhail S. Gelfand
, Inna Dubchak:
RegTransBase - a database of regulatory sequences and interactions in a wide range of prokaryotic genomes. Nucleic Acids Res. 35(Database-Issue): 407-412 (2007) - 2004
- [j4]Olga V. Kalinina
, Pavel S. Novichkov, Andrey A. Mironov, Mikhail S. Gelfand
, Aleksandra B. Rakhmaninova:
SDPpred: a tool for prediction of amino acid residues that determine differences in functional specificity of homologous proteins. Nucleic Acids Res. 32(Web-Server-Issue): 424-428 (2004) - 2001
- [j3]Andrey A. Mironov, Pavel S. Novichkov, Mikhail S. Gelfand
:
Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors. Bioinform. 17(1): 13-15 (2001) - [j2]Pavel S. Novichkov, Mikhail S. Gelfand
, Andrey A. Mironov:
Gene recognition in eukaryotic DNA by comparison of genomic sequences. Bioinform. 17(11): 1011-1018 (2001) - 2000
- [j1]Mikhail S. Gelfand
, Pavel S. Novichkov, Elena S. Novichkova, Andrey A. Mironov:
Comparative Analysis of Regulatory Patterns in Bacterial Genomes. Briefings Bioinform. 1(4): 357-371 (2000)
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