![](https://dblp.org/img/logo.ua.320x120.png)
![](https://dblp.org/img/dropdown.dark.16x16.png)
![](https://dblp.org/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.org/img/search.dark.16x16.png)
![search dblp](https://dblp.org/img/search.dark.16x16.png)
default search action
Search dblp
Full-text search
- > Home
Please enter a search query
- case-insensitive prefix search: default
e.g., sig matches "SIGIR" as well as "signal" - exact word search: append dollar sign ($) to word
e.g., graph$ matches "graph", but not "graphics" - boolean and: separate words by space
e.g., codd model - boolean or: connect words by pipe symbol (|)
e.g., graph|network
Update May 7, 2017: Please note that we had to disable the phrase search operator (.) and the boolean not operator (-) due to technical problems. For the time being, phrase search queries will yield regular prefix search result, and search terms preceded by a minus will be interpreted as regular (positive) search terms.
Author search results
Exact matches
Venue search results
no matches
Refine list
refine by author
- no options
- temporarily not available
refine by venue
- no options
- temporarily not available
refine by type
- no options
- temporarily not available
refine by access
- no options
- temporarily not available
refine by year
- no options
- temporarily not available
Publication search results
found 82 matches
- 2024
- Martin Golebiewski
, Gary D. Bader
, Padraig Gleeson
, Thomas E. Gorochowski
, Sarah M. Keating
, Matthias König, Chris J. Myers, David P. Nickerson
, Björn Sommer, Dagmar Waltemath
, Falk Schreiber:
Specifications of standards in systems and synthetic biology: status, developments, and tools in 2024. J. Integr. Bioinform. 21(1) (2024) - Ronald Xie, Steven Palayew, Augustin Toma, Gary D. Bader, Bo Wang:
WangLab at MEDIQA-M3G 2024: Multimodal Medical Answer Generation using Large Language Models. CoRR abs/2404.14567 (2024) - 2023
- Max Franz
, Christian Tannus Lopes, Dylan Fong, Mike Kucera, Manfred Cheung, Metin Can Siper, Gerardo Huck, Yue Dong, Selçuk Onur Sümer, Gary D. Bader
:
Cytoscape.js 2023 update: a graph theory library for visualization and analysis. Bioinform. 39(1) (2023) - Ronald Xie, Kuan Pang, Gary D. Bader, Bo Wang:
MAESTER: Masked Autoencoder Guided Segmentation at Pixel Resolution for Accurate, Self-Supervised Subcellular Structure Recognition. CVPR 2023: 3292-3301 - John M. Giorgi, Luca Soldaini, Bo Wang, Gary D. Bader, Kyle Lo, Lucy Lu Wang, Arman Cohan:
Open Domain Multi-document Summarization: A Comprehensive Study of Model Brittleness under Retrieval. EMNLP (Findings) 2023: 8177-8199 - Ronald Xie, Kuan Pang, Sai Chung, Catia Perciani, Sonya MacParland, Bo Wang, Gary D. Bader:
Spatially Resolved Gene Expression Prediction from Histology Images via Bi-modal Contrastive Learning. NeurIPS 2023 - Ronald Xie, Kuan Pang, Gary D. Bader, Bo Wang:
Spatially Resolved Gene Expression Prediction from H&E Histology Images via Bi-modal Contrastive Learning. CoRR abs/2306.01859 (2023) - Jun Ma, Ronald Xie, Shamini Ayyadhury, Cheng Ge, Anubha Gupta, Ritu Gupta, Song Gu, Yao Zhang, Gihun Lee, Joonkee Kim, Wei Lou, Haofeng Li, Eric Upschulte, Timo Dickscheid
, José Guilherme de Almeida
, Yixin Wang, Lin Han, Xin Yang, Marco Labagnara, Sahand Jamal Rahi, Carly Kempster, Alice Pollitt, Leon Espinosa, Tâm Mignot, Jan Moritz Middeke, Jan-Niklas Eckardt, Wangkai Li, Zhaoyang Li, Xiaochen Cai, Bizhe Bai, Noah F. Greenwald, David Van Valen, Erin Weisbart, Beth A. Cimini
, Zhuoshi Li, Chao Zuo, Oscar Brück, Gary D. Bader, Bo Wang:
The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions. CoRR abs/2308.05864 (2023) - 2022
- Marc Gillespie
, Bijay Jassal, Ralf Stephan
, Marija Milacic, Karen Rothfels, Andrea Senff-Ribeiro
, Johannes Griss
, Cristoffer Sevilla
, Lisa Matthews, Chuqiao Gong
, Chuan Deng, Thawfeek M. Varusai
, Eliot Ragueneau
, Yusra Haider, Bruce May, Veronica Shamovsky, Joel Weiser, Timothy Brunson, Nasim Sanati
, Liam Beckman, Xiang Shao, Antonio Fabregat
, Konstantinos Sidiropoulos, Julieth Murillo, Guilherme Viteri, Justin Cook, Solomon Shorser, Gary D. Bader
, Emek Demir, Chris Sander, Robin Haw, Guanming Wu, Lincoln Stein, Henning Hermjakob
, Peter D'Eustachio
:
The reactome pathway knowledgebase 2022. Nucleic Acids Res. 50(D1): 687-692 (2022) - Axel Wismüller, Adora M. DSouza, Anas Z. Abidin, M. Ali Vosoughi, Christopher Gange
, Isabel O. Cortopassi, Gracijela Bozovic, Alexander A. Bankier, Kiran Batra, Yosef Chodakiewitz, Yin Xi, Christopher T. Whitlow, Janardhana Ponnatapura
, Gary J. Wendt, Eric P. Weinberg, Larry Stockmaster
, David A. Shrier, Min Chul Shin, Roshan Modi, Hao Steven Lo
, Seth Kligerman, Aws Hamid
, Lewis D. Hahn, Glenn M. Garcia, Jonathan H. Chung, Talissa Altes, Suhny Abbara
, Anna S. Bader
:
Early-stage COVID-19 pandemic observations on pulmonary embolism using nationwide multi-institutional data harvesting. npj Digit. Medicine 5 (2022) - John M. Giorgi
, Gary D. Bader, Bo Wang:
A sequence-to-sequence approach for document-level relation extraction. BioNLP@ACL 2022: 10-25 - Jun Ma, Ronald Xie, Anubha Gupta, José Guilherme de Almeida, Gary D. Bader, Bo Wang:
Proceedings of The Cell Segmentation Challenge in Multi-modality High-Resolution Microscopy Images, Competitions in Neural Information Processing Systems, December 7, 2022, New Orleans, LA, USA. Proceedings of Machine Learning Research 212, PMLR 2022 [contents] - John M. Giorgi, Gary D. Bader, Bo Wang:
A sequence-to-sequence approach for document-level relation extraction. CoRR abs/2204.01098 (2022) - John M. Giorgi, Luca Soldaini, Bo Wang, Gary D. Bader, Kyle Lo, Lucy Lu Wang
, Arman Cohan:
Exploring the Challenges of Open Domain Multi-Document Summarization. CoRR abs/2212.10526 (2022) - 2021
- Adrien Rougny, Vasundra Touré, John Albanese
, Dagmar Waltemath, Denis Shirshov, Anatoly A. Sorokin
, Gary D. Bader, Michael L. Blinov, Alexander Mazein:
SBGN Bricks Ontology as a tool to describe recurring concepts in molecular networks. Briefings Bioinform. 22(5) (2021) - Max Franz
, Jeffrey V. Wong
, Metin Can Siper
, Christian Dallago
, John M. Giorgi, Emek Demir
, Chris Sander, Gary D. Bader
:
A flexible search system for high-accuracy identification of biological entities and molecules. J. Open Source Softw. 6(67): 3756 (2021) - John M. Giorgi
, Osvald Nitski, Bo Wang, Gary D. Bader:
DeCLUTR: Deep Contrastive Learning for Unsupervised Textual Representations. ACL/IJCNLP (1) 2021: 879-895 - 2020
- John M. Giorgi
, Gary D. Bader:
Towards reliable named entity recognition in the biomedical domain. Bioinform. 36(1): 280-286 (2020) - Igor V. Rodchenkov, Ozgun Babur
, Augustin Luna, Bülent Arman Aksoy, Jeffrey V. Wong
, Dylan Fong, Max Franz
, Metin Can Siper, Manfred Cheung, Michael Wrana
, Harsh Mistry, Logan Mosier
, Jonah Dlin, Qizhi Wen, Caitlin O'Callaghan, Wanxin Li, Geoffrey Elder, Peter T. Smith, Christian Dallago
, Ethan Cerami, Benjamin Gross, Ugur Dogrusoz
, Emek Demir, Gary D. Bader
, Chris Sander:
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. Nucleic Acids Res. 48(Database-Issue): D489-D497 (2020) - Katja Luck, Dae-Kyum Kim
, Luke Lambourne
, Kerstin Spirohn
, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie
, Benoît Charloteaux, Dong-Sic Choi
, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács
, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons
, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav
, Mariana Babor, Dawit Balcha, Omer Basha
, Christian Bowman-Colin, Suet-Feung Chin
, Soon-gang Choi
, Claudia Colabella
, Georges Coppin, Cassandra D'Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola
, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad
, Elodie Hatchi, Mohamed Helmy
, Yves Jacob
, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson
, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland
, Adriana San-Miguel
, Yun Shen, Dayag Sheykhkarimli
, Gloria M. Sheynkman, Eyal Simonovsky
, Murat Tasan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere
, Yang Wang, Robert J. Weatheritt
, Jochen Weile, Yu Xia
, Xinping Yang
, Esti Yeger Lotem
, Quan Zhong
, Patrick Aloy, Gary D. Bader
, Javier De Las Rivas
, Suzanne Gaudet, Tong Hao
, Janusz Rak
, Jan Tavernier, David E. Hill
, Marc Vidal, Frederick P. Roth
, Michael A. Calderwood
:
A reference map of the human binary protein interactome. Nat. 580(7803): 402-408 (2020) - Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M. Hess, Randi Istrup Juul, Ziao Lin, Lars Feuerbach, Radhakrishnan Sabarinathan, Tobias Madsen, Jaegil Kim, Loris Mularoni, Shimin Shuai, Andrés Lanzós, Carl Herrmann
, Yosef E. Maruvka, Ciyue Shen, Samirkumar B. Amin
, Pratiti Bandopadhayay, Johanna Bertl
, Keith A. Boroevich
, John Busanovich, Joana Carlevaro-Fita, Dimple Chakravarty, Calvin Wing Yiu Chan, David Craft, Priyanka Dhingra, Klev Diamanti
, Nuno A. Fonseca
, Abel Gonzalez-Perez
, Qianyun Guo, Mark P. Hamilton, Nicholas J. Haradhvala, Chen Hong, Keren Isaev, Todd A. Johnson, Malene Juul, André Kahles, Abdullah Kahraman, Youngwook Kim, Jan Komorowski, Kiran Kumar, Sushant Kumar, Donghoon Lee
, Kjong-Van Lehmann, Yilong Li, Eric Minwei Liu, Lucas Lochovsky, Keunchil Park, Oriol Pich, Nicola D. Roberts, Gordon Saksena, Steven E. Schumacher, Nikos Sidiropoulos, Lina Sieverling, Nasa Sinnott-Armstrong, Chip Stewart, David Tamborero, Jose M. C. Tubio, Husen M. Umer, Liis Uusküla-Reimand, Claes Wadelius, Lina Wadi, Xiaotong Yao, Cheng-Zhong Zhang, Jing Zhang, James E. Haber, Asger Hobolth, Marcin Imielinski, Manolis Kellis, Michael S. Lawrence, Christian von Mering, Hidewaki Nakagawa, Benjamin J. Raphael, Mark A. Rubin
, Chris Sander, Lincoln D. Stein, Joshua M. Stuart, Tatsuhiko Tsunoda, David A. Wheeler, Rory Johnson, Jüri Reimand
, Mark Gerstein, Ekta Khurana, Peter J. Campbell, Núria López-Bigas, Gary D. Bader, Jonathan Barenboim, Rameen Beroukhim, Søren Brunak, Ken Chen, Jung Kyoon Choi, Jordi Deu-Pons, J. Lynn Fink
, Joan Frigola, Carlo Gambacorti Passerini, Dale W. Garsed, Gad Getz, Ivo Glynne Gut, David Haan, Arif Ozgun Harmanci, Mohamed Helmy, Ermin Hodzic, José M. G. Izarzugaza, Jong K. Kim, Jan O. Korbel, Erik Larsson, Shantao Li, Xiaotong Li, Shaoke Lou, Kathleen Marchal
, Iñigo Martincorena, Alexander Martínez-Fundichely, Patrick D. McGillivray, William Meyerson, Ferran Muiños, Marta Paczkowska, Kiejung Park, Jakob Skou Pedersen
, Tirso Pons
, Sergio Pulido-Tamayo, Iker Reyes-Salazar, Matthew A. Reyna, Carlota Rubio-Perez, Süleyman Cenk Sahinalp, Leonidas Salichos, Mark Shackleton, Raunak Shrestha, Alfonso Valencia, Miguel Vazquez, Lieven P. C. Verbeke, Jiayin Wang, Jonathan Warrell, Sebastian M. Waszak
, Joachim Weischenfeldt, Guanming Wu, Jun Yu, Xuanping Zhang, Yan Zhang, Zhongming Zhao, Lihua Zou, Kadir C. Akdemir, Eva G. Alvarez, Adrian Baez-Ortega, Paul C. Boutros, David D. L. Bowtell, Benedikt Brors, Kathleen H. Burns, Kin Chan, Isidro Cortés-Ciriano
, Ana Dueso-Barroso, Andrew J. Dunford, Paul A. Edwards, Xavier Estivill, Dariush Etemadmoghadam, Milana Frenkel-Morgenstern
, Dmitry A. Gordenin, Barbara Hutter, David T. W. Jones, Young Seok Ju, Marat D. Kazanov
, Leszek J. Klimczak, Youngil Koh, Eunjung Alice Lee, Jake June-Koo Lee, Andy G. Lynch
, Geoff MacIntyre, Florian Markowetz, Matthew Meyerson, Satoru Miyano, Fabio C. P. Navarro, Stephan Ossowski, Peter J. Park, John V. Pearson, Montserrat Puiggròs, Karsten Rippe, Steven A. Roberts, Bernardo Rodriguez-Martin, Ralph Scully, David Torrents, Izar Villasante, Nicola Waddell, Jeremiah A. Wala, Lixing Yang, Sung-Soo Yoon, Jorge Zamora:
Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. Nat. 578(7793): 102-111 (2020) - Thinh N. Tran
, Gary D. Bader
:
Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data. PLoS Comput. Biol. 16(9) (2020) - John M. Giorgi, Osvald Nitski, Gary D. Bader, Bo Wang:
DeCLUTR: Deep Contrastive Learning for Unsupervised Textual Representations. CoRR abs/2006.03659 (2020) - Shraddha Pai
, Philipp Weber
, Ruth Isserlin
, Hussam Kaka
, Shirley Hui, Muhammad Ahmad Shah, Luca Giudice, Rosalba Giugno, Anne Krogh Nøhr, Jan Baumbach, Gary D. Bader
:
netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks. F1000Research 9: 1239 (2020) - 2019
- Falk Schreiber, Björn Sommer, Gary D. Bader, Padraig Gleeson
, Martin Golebiewski, Michael Hucka
, Sarah M. Keating
, Matthias König
, Chris J. Myers
, David P. Nickerson
, Dagmar Waltemath
:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2019. J. Integr. Bioinform. 16(2) (2019) - John M. Giorgi, Xindi Wang
, Nicola Sahar, Won Young Shin, Gary D. Bader, Bo Wang:
End-to-end Named Entity Recognition and Relation Extraction using Pre-trained Language Models. CoRR abs/1912.13415 (2019) - 2018
- John M. Giorgi
, Gary D. Bader:
Transfer learning for biomedical named entity recognition with neural networks. Bioinform. 34(23): 4087-4094 (2018) - Falk Schreiber, Gary D. Bader, Padraig Gleeson, Martin Golebiewski, Michael Hucka
, Sarah M. Keating
, Nicolas Le Novère, Chris J. Myers, David P. Nickerson, Björn Sommer, Dagmar Waltemath:
Specifications of Standards in Systems and Synthetic Biology: Status and Developments in 2017. J. Integr. Bioinform. 15(1) (2018) - Max Franz
, Harold Rodriguez, Christian Tannus Lopes, Khalid Zuberi, Jason Montojo, Gary D. Bader, Quaid Morris
:
GeneMANIA update 2018. Nucleic Acids Res. 46(Webserver-Issue): W60-W64 (2018) - Barry Demchak
, David Otasek, Alexander R. Pico
, Gary D. Bader
, Keiichiro Ono, Brett Settle, Eric Sage, John H. Morris
, William J. R. Longabaugh, Christian Tannus Lopes, Michael Kucera, Adam Treister
, Benno Schwikowski, Piet Molenaar, Trey Ideker
:
The Cytoscape Automation app article collection. F1000Research 7: 800 (2018)
skipping 52 more matches
loading more results
failed to load more results, please try again later
![](https://dblp.org/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
retrieved on 2024-09-01 02:26 CEST from data curated by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint