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Augustin Luna
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2020 – today
- 2024
- [i3]Yoshitaka Inoue, Hunmin Lee, Tianfan Fu, Augustin Luna:
drGAT: Attention-Guided Gene Assessment of Drug Response Utilizing a Drug-Cell-Gene Heterogeneous Network. CoRR abs/2405.08979 (2024) - 2023
- [j22]Adrien Rougny
, Irina Balaur, Augustin Luna, Alexander Mazein:
StonPy: a tool to parse and query collections of SBGN maps in a graph database. Bioinform. 39(3) (2023) - 2021
- [j21]Hasan Baig
, Pedro Fontanarossa
, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan
, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno
, Thomas E. Gorochowski, Raik Grünberg
, Jihwan Lee
, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar
, Christopher A. Voigt, Anil Wipat, David Zong
, Zach Zundel, Jacob Beal
, Chris J. Myers:
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18(3) (2021) - [j20]Augustin Luna
, Fathi Elloumi, Sudhir Varma, Yanghsin Wang, Vinodh N. Rajapakse
, Mirit I. Aladjem, Jacques Robert, Chris Sander, Yves Pommier, William C. Reinhold:
CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics. Nucleic Acids Res. 49(Database-Issue): D1083-D1093 (2021) - [j19]Özgün Babur
, Augustin Luna
, Anil Korkut
, Funda Durupinar, Metin Can Siper, Ugur Dogrusoz
, Alvaro Sebastian Vaca Jacome
, Ryan Peckner, Karen E. Christianson
, Jacob D. Jaffe, Paul T. Spellman, Joseph E. Aslan
, Chris Sander, Emek Demir
:
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge. Patterns 2(6): 100257 (2021) - 2020
- [j18]Hasan Baig
, Pedro Fontanarrosa
, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan
, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno
, Thomas E. Gorochowski, Raik Grünberg
, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar
, Christopher A. Voigt, Anil Wipat, David Zong
, Zach Zundel, Jacob Beal
, Chris J. Myers:
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17(2-3) (2020) - [j17]Frank T. Bergmann
, Tobias Czauderna
, Ugur Dogrusoz
, Adrien Rougny
, Andreas Dräger
, Vasundra Touré
, Alexander Mazein
, Michael L. Blinov
, Augustin Luna
:
Systems biology graphical notation markup language (SBGNML) version 0.3. J. Integr. Bioinform. 17(2-3) (2020) - [j16]Igor V. Rodchenkov, Ozgun Babur
, Augustin Luna, Bülent Arman Aksoy, Jeffrey V. Wong
, Dylan Fong, Max Franz
, Metin Can Siper, Manfred Cheung, Michael Wrana
, Harsh Mistry, Logan Mosier
, Jonah Dlin, Qizhi Wen, Caitlin O'Callaghan, Wanxin Li, Geoffrey Elder, Peter T. Smith, Christian Dallago
, Ethan Cerami, Benjamin Gross, Ugur Dogrusoz
, Emek Demir, Gary D. Bader
, Chris Sander:
Pathway Commons 2019 Update: integration, analysis and exploration of pathway data. Nucleic Acids Res. 48(Database-Issue): D489-D497 (2020) - [i2]Roc Reguant
, Yevgeniy Antipin, Robert P. Sheridan, Christian Dallago
, Drew Diamantoukos, Augustin Luna
, Chris Sander
, Nicholas Paul Gauthier:
AlignmentViewer: Sequence Analysis of Large Protein Families. F1000Research 9: 213 (2020)
2010 – 2019
- 2019
- [j15]Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P
, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta
, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg
, Augustin Luna, James Alastair McLaughlin
, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown
, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal
, Anil Wipat
:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16(2) (2019) - [j14]Adrien Rougny
, Vasundra Touré
, Stuart L. Moodie, Irina Balaur
, Tobias Czauderna
, Hanna Borlinghaus
, Ugur Dogrusoz
, Alexander Mazein
, Andreas Dräger
, Michael L. Blinov
, Alice Villéger, Robin Haw
, Emek Demir, Huaiyu Mi
, Anatoly A. Sorokin
, Falk Schreiber, Augustin Luna
:
Systems Biology Graphical Notation: Process Description language Level 1 Version 2.0. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j13]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin
, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg
, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan
, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15(1) (2018) - 2016
- [j12]Anika Oellrich, Nigel Collier, Tudor Groza
, Dietrich Rebholz-Schuhmann, Nigam Shah, Olivier Bodenreider, Mary Regina Boland
, Ivo I. Georgiev, Hongfang Liu, Kevin M. Livingston, Augustin Luna, Ann-Marie Mallon
, Prashanti Manda
, Peter N. Robinson, Gabriella Rustici, Michelle Simon, Liqin Wang, Rainer Winnenburg
, Michel Dumontier
:
The digital revolution in phenotyping. Briefings Bioinform. 17(5): 819-830 (2016) - [j11]Augustin Luna, Özgün Babur, Bülent Arman Aksoy, Emek Demir, Chris Sander:
PaxtoolsR: pathway analysis in R using Pathway Commons. Bioinform. 32(8): 1262-1264 (2016) - [j10]Augustin Luna, Vinodh N. Rajapakse
, Fabricio G. Sousa
, Jianjiong Gao
, Nikolaus Schultz, Sudhir Varma
, William C. Reinhold
, Chris Sander, Yves Pommier:
rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R. Bioinform. 32(8): 1272-1274 (2016) - 2015
- [j9]Huaiyu Mi, Falk Schreiber, Stuart L. Moodie, Tobias Czauderna
, Emek Demir, Robin Haw
, Augustin Luna, Nicolas Le Novère, Anatoly A. Sorokin
, Alice Villéger:
Systems Biology Graphical Notation: Activity Flow language Level 1 Version 1.2 . J. Integr. Bioinform. 12(2) (2015) - [j8]Anatoly A. Sorokin
, Nicolas Le Novère, Augustin Luna, Tobias Czauderna
, Emek Demir, Robin Haw
, Huaiyu Mi, Stuart L. Moodie, Falk Schreiber, Alice Villéger:
Systems Biology Graphical Notation: Entity Relationship language Level 1 Version 2. J. Integr. Bioinform. 12(2) (2015) - [j7]Augustin Luna, Geoffrey B. McFadden
, Mirit I. Aladjem, Kurt W. Kohn:
Predicted Role of NAD Utilization in the Control of Circadian Rhythms during DNA Damage Response. PLoS Comput. Biol. 11(5) (2015) - 2014
- [i1]Mine Edes, Can C. Özturan, Türkan Haliloglu, Augustin Luna, Ruth Nussinov:
MIMTool: A Tool for Drawing Molecular Interaction Maps. CoRR abs/1407.2073 (2014) - 2013
- [b1]Augustin Luna:
Formalization of molecular interaction maps in systems biology; Application to simulations of the relationship between DNA damage response and circadian rhythms. Boston University, USA, 2013 - [j6]Jake Y. Fried, Martijn P. van Iersel
, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna:
PathVisio-Faceted Search: an exploration tool for multi-dimensional navigation of large pathways. Bioinform. 29(11): 1465-1466 (2013) - 2012
- [j5]Kumar Chandan, Martijn P. van Iersel
, Mirit I. Aladjem, Kurt W. Kohn, Augustin Luna:
PathVisio-Validator: a rule-based validation plugin for graphical pathway notations. Bioinform. 28(6): 889-890 (2012) - [j4]Martijn P. van Iersel
, Alice Villéger, Tobias Czauderna
, Sarah E. Boyd
, Frank T. Bergmann
, Augustin Luna, Emek Demir, Anatoly A. Sorokin
, Ugur Dogrusöz
, Yukiko Matsuoka, Akira Funahashi
, Mirit I. Aladjem, Huaiyu Mi, Stuart L. Moodie, Hiroaki Kitano, Nicolas Le Novère, Falk Schreiber:
Software support for SBGN maps: SBGN-ML and LibSBGN. Bioinform. 28(15): 2016-2021 (2012) - 2011
- [j3]Augustin Luna, Margot Sunshine, Martijn P. van Iersel
, Mirit I. Aladjem, Kurt W. Kohn:
PathVisio-MIM: PathVisio plugin for creating and editing Molecular Interaction Maps (MIMs). Bioinform. 27(15): 2165-2166 (2011) - [j2]Augustin Luna, Evrim I. Karac, Margot Sunshine, Lucas Chang, Ruth Nussinov
, Mirit I. Aladjem, Kurt W. Kohn:
A Formal MIM Specification and Tools for the Common Exchange of MIM Diagrams: an XML-Based Format, an API, and a Validation Method. BMC Bioinform. 12: 167 (2011)
2000 – 2009
- 2007
- [j1]Augustin Luna, Kristin K. Nicodemus:
snp.plotter: an R-based SNP/haplotype association and linkage disequilibrium plotting package. Bioinform. 23(6): 774-776 (2007)
Coauthor Index
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last updated on 2024-08-05 20:23 CEST by the dblp team
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