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- Haim J. Wolfson
Tel Aviv University, Blavatnik School of Computer Science, Israel
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Publication search results
found 73 matches
- 2023
- Jérôme Tubiana, Lucia Adriana-Lifshits, Michael Nissan, Matan Gabay, Inbal Sher, Marina Sova, Haim J. Wolfson, Maayan Gal:
Funneling modulatory peptide design with generative models: Discovery and characterization of disruptors of calcineurin protein-protein interactions. PLoS Comput. Biol. 19(2) (2023) - Mark Rozanov, Haim J. Wolfson:
SegmA: Residue Segmentation of cryo-EM density maps. BIBM 2023: 2191-2196 - 2018
- Mark Rozanov, Haim J. Wolfson:
AAnchor: CNN guided detection of anchor amino acids in high resolution cryo-EM density maps. BIBM 2018: 88-91 - 2017
- Michael Estrin, Haim J. Wolfson:
SnapDock - template-based docking by Geometric Hashing. Bioinform. 33(14): i30-i36 (2017) - 2016
- Naama Hurwitz, Dina Schneidman-Duhovny, Haim J. Wolfson:
Memdock: an α-helical membrane protein docking algorithm. Bioinform. 32(16): 2444-2450 (2016) - Daniel Zaidman, Haim J. Wolfson:
PinaColada: peptide-inhibitor ant colony ad-hoc design algorithm. Bioinform. 32(15): 2289-2296 (2016) - Michael Zabejansky, Haim J. Wolfson:
Accelerating protein-protein complex validation by GPU based funnel generation. BIBM 2016: 150-155 - 2015
- Naama Amir, Dan Cohen, Haim J. Wolfson:
DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes. Bioinform. 31(17): 2801-2807 (2015) - Naama Amir, Dan Cohen, Haim J. Wolfson:
DockStar: A Novel ILP Based Integrative Method for Structural Modelling of Multimolecular Protein Complexes (Extended Abstract). RECOMB 2015: 13-15 - 2011
- Elad Donsky, Haim J. Wolfson:
PepCrawler: a fast RRT-based algorithm for high-resolution refinement and binding affinity estimation of peptide inhibitors. Bioinform. 27(20): 2836-2842 (2011) - Ilona Kifer, Ruth Nussinov, Haim J. Wolfson:
GOSSIP: a method for fast and accurate global alignment of protein structures. Bioinform. 27(7): 925-932 (2011) - Elina Tjioe, Keren Lasker, Ben M. Webb, Haim J. Wolfson, Andrej Sali:
MultiFit: a web server for fitting multiple protein structures into their electron microscopy density map. Nucleic Acids Res. 39(Web-Server-Issue): 167-170 (2011) - Mira Abraham, Haim J. Wolfson:
Inexact Graph Matching by "Geodesic Hashing" for the Alignment of Pseudoknoted RNA Secondary Structures. Stringology 2011: 45-57 - Elad Donsky, Haim J. Wolfson:
PepCrawler: A Fast RRT-Like Algorithm for High-Resolution Refinement and Binding-Affinity Estimation of Peptide Inhibitors - (Abstract). WABI 2011: 73-75 - 2010
- Efrat Mashiach, Ruth Nussinov, Haim J. Wolfson:
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking. Nucleic Acids Res. 38(Web-Server-Issue): 457-461 (2010) - 2009
- Oranit Dror, Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
Novel Approach for Efficient Pharmacophore-Based Virtual Screening: Method and Applications. J. Chem. Inf. Model. 49(10): 2333-2343 (2009) - Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
RsiteDB: a database of protein binding pockets that interact with RNA nucleotide bases. Nucleic Acids Res. 37(Database-Issue): 369-373 (2009) - 2008
- Oranit Dror, Dina Schneidman-Duhovny, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson, Roded Sharan:
Structural similarity of genetically interacting proteins. BMC Syst. Biol. 2: 69 (2008) - Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection via Multiple Flexible Alignment of Drug-Like Molecules. J. Comput. Biol. 15(7): 737-754 (2008) - Efrat Mashiach, Dina Schneidman-Duhovny, Nelly Andrusier, Ruth Nussinov, Haim J. Wolfson:
FireDock: a web server for fast interaction refinement in molecular docking. Nucleic Acids Res. 36(Web-Server-Issue): 229-232 (2008) - Dina Schneidman-Duhovny, Oranit Dror, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
PharmaGist: a webserver for ligand-based pharmacophore detection. Nucleic Acids Res. 36(Web-Server-Issue): 223-228 (2008) - Alexandra Shulman-Peleg, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
MultiBind and MAPPIS: webservers for multiple alignment of protein 3D-binding sites and their interactions. Nucleic Acids Res. 36(Web-Server-Issue): 260-264 (2008) - Eitan Yaffe, Dan Fishelovitch, Haim J. Wolfson, Dan Halperin, Ruth Nussinov:
MolAxis: a server for identification of channels in macromolecules. Nucleic Acids Res. 36(Web-Server-Issue): 210-215 (2008) - 2007
- Keren Lasker, Oranit Dror, Maxim Shatsky, Ruth Nussinov, Haim J. Wolfson:
EMatch: Discovery of High Resolution Structural Homologues of Protein Domains in Intermediate Resolution Cryo-EM Maps. IEEE ACM Trans. Comput. Biol. Bioinform. 4(1): 28-39 (2007) - Yuval Inbar, Dina Schneidman-Duhovny, Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
Deterministic Pharmacophore Detection Via Multiple Flexible Alignment of Drug-Like Molecules. RECOMB 2007: 412-429 - 2006
- Gilad Wainreb, Nurit Haspel, Haim J. Wolfson, Ruth Nussinov:
A permissive secondary structure-guided superposition tool for clustering of protein fragments toward protein structure prediction via fragment assembly. Bioinform. 22(11): 1343-1352 (2006) - Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussinov, Haim J. Wolfson:
The Multiple Common Point Set Problem and Its Application to Molecule Binding Pattern Detection. J. Comput. Biol. 13(2): 407-428 (2006) - Oranit Dror, Ruth Nussinov, Haim J. Wolfson:
The ARTS web server for aligning RNA tertiary structures. Nucleic Acids Res. 34(Web-Server-Issue): 412-415 (2006) - 2005
- Yuval Inbar, Haim J. Wolfson, Ruth Nussinov:
Multiple Docking for Protein Structure Prediction. Int. J. Robotics Res. 24(2-3): 131-150 (2005) - Dina Schneidman-Duhovny, Yuval Inbar, Ruth Nussinov, Haim J. Wolfson:
PatchDock and SymmDock: servers for rigid and symmetric docking. Nucleic Acids Res. 33(Web-Server-Issue): 363-367 (2005)
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