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Publication search results
found 70 matches
- 2022
- Muhannad A. Abu-Hashem
, Adnan Gutub
:
Efficient computation of Hash Hirschberg protein alignment utilizing hyper threading multi-core sharing technology. CAAI Trans. Intell. Technol. 7(2): 278-291 (2022) - 2019
- Wei Zheng
, Chengxin Zhang
, Qiqige Wuyun, Robin Pearce, Yang Li, Yang Zhang
:
LOMETS2: improved meta-threading server for fold-recognition and structure-based function annotation for distant-homology proteins. Nucleic Acids Res. 47(Webserver-Issue): W429-W436 (2019) - Sutanu Bhattacharya
, Debswapna Bhattacharya:
Contact-assisted Protein Threading: An Evolving New Direction. BCB 2019: 536 - Sutanu Bhattacharya
, Debswapna Bhattacharya:
How Effective is Contact-assisted Protein Threading? BCB 2019: 553 - 2018
- Justin S. Diamond, Yang Zhang
:
THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes. Database J. Biol. Databases Curation 2018: bay090 (2018) - Jianwei Zhu, Sheng Wang
, Dongbo Bu, Jinbo Xu:
Protein threading using residue co-variation and deep learning. Bioinform. 34(13): i263-i273 (2018) - 2017
- Daniel W. A. Buchan, David T. Jones:
EigenTHREADER: analogous protein fold recognition by efficient contact map threading. Bioinform. 33(17): 2684-2690 (2017) - Yan Wang, Jian Wang, Ruiming Li, Qiang Shi, Zhidong Xue, Yang Zhang
:
ThreaDomEx: a unified platform for predicting continuous and discontinuous protein domains by multiple-threading and segment assembly. Nucleic Acids Res. 45(Webserver-Issue): W400-W407 (2017) - 2016
- Yinglei Song, Junfeng Qu, Ying Xu, Liming Cai:
A New Graph Theoretic Approach for Protein Threading. Fundam. Informaticae 145(2): 151-170 (2016) - 2014
- Pawel Gniewek
, Andrzej Kolinski
, Andrzej Kloczkowski, Dominik Gront
:
BioShell-Threading: versatile Monte Carlo package for protein 3D threading. BMC Bioinform. 15: 22 (2014) - Kevin J. Maurice:
SSThread: Template-free protein structure prediction by threading pairs of contacting secondary structures followed by assembly of overlapping pairs. J. Comput. Chem. 35(8): 644-656 (2014) - Yinglei Song, Junfeng Qu:
A New Graph Theoretic Approach for Protein Threading. ICIC (3) 2014: 501-507 - 2013
- Jianzhu Ma, Sheng Wang
, Feng Zhao, Jinbo Xu:
Protein threading using context-specific alignment potential. Bioinform. 29(13): 257-265 (2013) - Zhidong Xue, Dong Xu, Yan Wang, Yang Zhang
:
ThreaDom: extracting protein domain boundary information from multiple threading alignments. Bioinform. 29(13): 247-256 (2013) - Michal Brylinski, Wei Pan Feinstein:
eFindSite: Improved prediction of ligand binding sites in protein models using meta-threading, machine learning and auxiliary ligands. J. Comput. Aided Mol. Des. 27(6): 551-567 (2013) - Aysam Guerler, Brandon Govindarajoo, Yang Zhang
:
Mapping Monomeric Threading to Protein-Protein Structure Prediction. J. Chem. Inf. Model. 53(3): 717-725 (2013) - Wajeb Gharibi, Marwah Mohammed Bakri:
Protein Threading Based on Nonlinear Integer Programming. CoRR abs/1310.0395 (2013) - 2012
- Jianzhu Ma, Jian Peng, Sheng Wang
, Jinbo Xu:
A conditional neural fields model for protein threading. Bioinform. 28(12): 59-66 (2012) - 2011
- Mingfu Shao, Sheng Wang
, Chao Wang, Xiongying Yuan, Shuai Li, Wei-Mou Zheng, Dongbo Bu:
Incorporating Ab Initio energy into threading approaches for protein structure prediction. BMC Bioinform. 12(S-1): S54 (2011) - Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat:
Local protein threading by Mixed Integer Programming. Discret. Appl. Math. 159(16): 1707-1716 (2011) - 2010
- Jian Peng, Jinbo Xu:
Low-homology protein threading. Bioinform. 26(12): 294-300 (2010) - 2009
- Mu Gao, Jeffrey Skolnick:
A Threading-Based Method for the Prediction of DNA-Binding Proteins with Application to the Human Genome. PLoS Comput. Biol. 5(11) (2009) - Fei Luo, Lin Chen:
Parallelizing the Protein Threading Problem in a Hybrid Peer-to-Peer Based High Performance Computing Platform. ACIS-ICIS 2009: 136-141 - Guillaume Collet, Rumen Andonov, Nicola Yanev, Jean-François Gibrat:
Protein Threading. CTW 2009: 341-344 - Jian Peng, Jinbo Xu:
Boosting Protein Threading Accuracy. RECOMB 2009: 31-45 - 2008
- Vinay Pulim:
Protein-protein interaction prediction using local threading. Massachusetts Institute of Technology, Cambridge, MA, USA, 2008 - Kyle Ellrott
, Jun-tao Guo, Victor Olman, Ying Xu:
Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays. J. Bioinform. Comput. Biol. 6(3): 585-602 (2008) - 2007
- Wei Zhong, Gulsah Altun, Xinmin Tian, Robert W. Harrison
, Phang C. Tai, Yi Pan:
Parallel protein secondary structure prediction schemes using Pthread and OpenMP over hyper-threading technology. J. Supercomput. 41(1): 1-16 (2007) - Siddharth Singh, Krishnan Hajela, Ashwini Kumar Ramani:
RßHpred: Prediction of Right-Handed ß-Helix Fold from Protein Sequence Using SVM and Protein Threading. CIT 2007: 1116-1121 - Rumen Andonov, Guillaume Collet, Jean-François Gibrat, Antoine Marin, Vincent Poirriez
, Nicola Yanev:
Recent Advances in Solving the Protein Threading Problem. Grid Computing for Bioinformatics and Computational Biology 2007: 325-356
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